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Bacterial contributions to mammalian gut development
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“the gut microbiome can be viewed as an anaerobic bioreactor programmed to synthesize molecules which direct the mammalian immune system,5 modify the mammalian epigenome,6 and regulate host metabolism.7”
From The Gut Microbiome and the Brain (2014) · cites this paper as [5]
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Myths and Dogmas in Neonatal Gastroenterology and Nutrition
Neu, J. (2007) · NeoReviews · doi:10.1542/neo.8-11-e485 · Cited by 5
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Effects of hyperbaric conditions on fecal microbiota
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“Furthermore, microbes are increasingly thought to play an instructive role in the development of the individual organism, and in differentiation and other countervailing processes (e.g. Blaser et al. 2013; Cho et al. 2012; Hooper 2004; Ito and Ohta 2015).”
BackgroundThe Gut Microbiota: Ecology and Function
Willing, B. P., & Jansson, J. K. (2014) · ASM Press eBooks · doi:10.1128/9781555816865.ch3 · Cited by 4
“The term “ecological development” was recently coined to support the idea that development of the GI tract is a product of the genetics of the host and the host’s interactions with resident microbes (Hooper, 2004).”
BackgroundMetzger, D. W. (2007) · Springer eBooks · doi:10.1007/978-0-387-72232-0_11 · Cited by 5
“Similarly, it is known that commensal gut bacteria influence expression of intestinal IgA-producing cells and that such cells are nearly absent in germ-free animals ( Hooper, 2004; Mazmanian et al., 2005; Rhee et al., 2004; Stepankova et al., 1980).”
BackgroundLactobacilli in the porcine intestine: from composition to functionality
Konstantinov, S. R. (2005) · doi:10.18174/45400 · Cited by 5
Sun, Y., Yu, Y., Guo, J., Zhong, L., & Zhang, M. (2021) · Research Square · doi:10.21203/rs.3.rs-312376/v1 · Cited by 5
“The main function of Bacteroides is to help the host degrade carbohydrates, proteins, and other substances to increase the nutrient - utilization rate of the host[19].”
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“Gut microbiota can synthesize essential amino acids, regulate fat metabolism, and activate the immune system [42,43].”
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Nutraceuticals as Chemopreventive and Therapeutic agents in Gut Associated Pathogenesis
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“Restoration of these deficiencies is achieved by colonization of a single Bacteroides species [29-31].”
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Haque, M., Koski, K. G., & Scott, M. E. (2021) · International Journal for Parasitology · doi:10.1016/j.ijpara.2021.03.008 · Cited by 5
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“Human beings rely on their native microbiota for nutrition and resistance to colonisation by pathogens (Servin, 2004; Brook, 2005; Guarner, 2006; Reid and Bruce, 2006); furthermore, recent discoveries have shown that symbiotic microbes make essential contributions to the development, metabolism and immune response of…”
BackgroundEffects of Oats and β‐Glucan on Gut Health
Korczak, R., & Slavin, J. L. (2013) · doi:10.1002/9781118354100.ch14 · Cited by 4
Exploring the functionality of intestinal Bifidobacteria: a post-genomics approach
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“D’importants travaux chez les animaux axéniques maintenus en conditions stériles puis colonisés par différentes souches bactériennes ont permis de mettre en évidence ces différents effets [10].”
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“In the first months of life, the microbial composition undergoes frequent and severe changes, as the infant is exposed to a rapidly changing environment with a broad variety of bacteria (Hooper 2004, Bjursell et al. 2006, Palmer et al. 2007).”
BackgroundInterkingdom Community Interactions in Disease Ecology
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“!(1-6) glucose(9,25) Transgalactosylation of maltose(9) 2Y8 YesVbifidus effect(24,27)”
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Romagnoli, E. M., Kmit, M. C. P., Chiaramonte, J. B., Rossmann, M., & Mendes, R. (2017) · Springer eBooks · doi:10.1007/978-3-319-55804-2_16 · Cited by 6
Innate Immunity and Epithelial Biology: Special Considerations in the Neonatal Gut
Lin, P. W., & Neish, A. S. (2008) · Elsevier eBooks · doi:10.1016/b978-1-4160-3160-4.10004-5 · Cited by 3
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Gut microbiota and brain development: A review
Varier, K. M., Karandikar, A., Liu, W., Chen, J., Ben‐David, Y., Shen, X., Chinnasamy, A., & Gajendran, B. (2020) · Elsevier eBooks · doi:10.1016/b978-0-12-821265-3.00018-9 · Cited by 3
Cochetiere, M. F. D. L., Rougé, C., Szponar, B., Larsson, L., & Potel, G. (2007) · Microbial Ecology in Health and Disease · doi:10.1080/08910600601132615 · Cited by 3
“The mechanism remains unclear but has been linked by some researchers to the ‘hygiene hypothesis’ (25).”
BackgroundSobko, T. (2006) · Figshare · Cited by 3
MICROBIAL CONTRIBUTIONS TO GUT DEVELOPMENT IN THE NEONATAL PIG
Willing, B. P. (2007) · University Library - University of Saskatchewan (University of Saskatchewan) · Cited by 3
Zhao, C., Yang, Y., Zhao, P., & Bai, L. (2025) · Frontiers in Microbiology · doi:10.3389/fmicb.2025.1547348 · Cited by 2
“The main function of Bacteroides is the metabolism of polysaccharides and bile acids, aiding in protein synthesis and enhancing host immune function (Hooper, 2004; Bäckhed et al., 2005).”
The role of epigenetic regulation of membrane glycoconjugates in the attenuation of viral pandemics
Lauc, G., & Zoldoš, V. (2010) · Medical Hypotheses · doi:10.1016/j.mehy.2010.09.033 · Cited by 2
“Crosstalk between commensal microorganisms and intestinal cells which produce specific glycoconjugates to support commensal and hinder pathogenic bacteria [24,25] provides a successful paradigm how interaction with microorganisms can induce changes in protein glycosylation.”
BackgroundSun, Z., Zhen, Y., Li, T., Aschalew, N. D., Wang, T., Chen, X., Zhao, W., Zhang, X., & Qin, G. (2022) · South African Journal of Animal Science · doi:10.4314/sajas.v51i6.1 · Cited by 2
“Megamonas is a commensal organism present in the intestinal tract of mammals and birds (Hooper, 2004).”
BackgroundEffects of betaine supplementation on reproductive performance of breeding geese
Yang, Z., Xu, C., Ma, S., Zhao, R., Yang, H., & Wang, Z. (2022) · British Poultry Science · doi:10.1080/00071668.2022.2128988 · Cited by 2
“Kettunen et al. (2001) reported that supplementation with betaine increased the epithelial villus-crypt ration in broiler chicks, which was attributed to both the methyl group donor and osmotic nature of betaine (Hooper 2004).”
BackgroundGreslehner, G. P., Boem, F., Chiu, L., & Konsman, J. P. (2023) · Masterclass in neuroendocrinology · doi:10.1007/978-3-031-21358-8_2 · Cited by 2
Taïbi, A., Tokár, T., Tremblay, J., Gargari, G., Streutker, C., Li, B., Pierro, A., Guglielmetti, S., Tompkins, T. A., Jurišica, I., et al. (2023) · mSystems · doi:10.1128/msystems.00431-23 · Cited by 2
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“Bacteria such as Bacteroides can boost the immune system, hence raising immunity levels (Hooper, 2004).”
BackgroundEffect of the diet level of whole-plant corn silage on the colonic microflora of Hezuo pigs
Yang, Q., Wang, L., Wang, P., Yan, Z., Chen, Q., Zhang, P., Li, J., Jia, R., Li, Y., Yin, X., et al. (2024) · PeerJ · doi:10.7717/peerj.18630 · Cited by 2
“The balance between Firmicutes and Bacteroidota is crucial for maintaining the stability and health of the host ’ s intestinal microecology ( Ley et al., 2008 ; Hooper, 2004 ; Hooper et al., 2001 ).”
Microbiote, ce qu’il faut savoir
Sokol, H. (2014) · Côlon & Rectum · doi:10.1007/s11725-014-0536-4 · Cited by 2
The Influence of Diet on the Mammalian Gut Microbiome
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“Since this alteration of the microbiota functionality at 286 the suckling-to-solid food transition might play a key role in intestinal and immune maturation 287 (Hooper, 2004; Al Nabhani and Eberl, 2020), a perspective of our work would be to determine what 288 are the effects on the gut barrier function of the metabo…”
BackgroundDevelopmental staging and future research directions of the model marine tubeworm Hydroides elegansPreprint
Nesbit, K. T., & Shikuma, N. J. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.10.24.513551 · Cited by 2
“The transition to 163 multicellularity[1] as well as switches between asexual to sexual reproductive strategies[2] in 164 choanoflagellates, maturation of the gut in zebrafish[3] and mammals[4], organogenesis in the 165 Hawaiian bobtail squid[5], and initiation of metamorphosis in marine invertebrates[6, 7] 166”
BackgroundFunctional metagenomic analysis of carbohydrate degrading enzymes from the human gut microbiota
Szczepańska, A. (2011) · UEA Digital Repository (University of East Anglia) · Cited by 2
Qin, Q., Ma, B., Li, Z., Wu, H., Zhu, J., Li, X., Wang, K., & Yi, X. (2023) · Brazilian Journal of Poultry Science · doi:10.1590/1806-9061-2023-1825 · Cited by 1
Exploring the human microbiome: Its role and impact on overall health and disease prevention
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“Furthermore, mucosal epithelia adjust their expression of mucus and nutrient receptors and undergo differentiation in response to the microbiota (27-29).”
BackgroundIntestinal mucosal turnover in germ-free piglets infected with E. coli
Tóth, Š., Fagová, Z., Holodová, M., Čurgali, K., Mechírová, E., Kunová, A., Maretta, M., Nemcová, R., Gancarčíková, S., & Danková, M. (2024) · Journal of Molecular Histology · doi:10.1007/s10735-024-10278-2 · Cited by 1
“Bacterial colonisation is a dynamic process, with the neonatal gut specifically tuned to promote tolerance to initially colonising bacteria (Hooper 2004).”
La (méta)génomique des microorganismes du rumen et ses applications à la production des ruminants
Morgavi, D., Kelly, W. J., Janssen, P. H., & Attwood, G. T. (2013) · INRAE Productions Animales · doi:10.20870/productions-animales.2013.26.4.3163 · Cited by 2
The Sea Cucumber Holobiont and Probiotics: Recent Progress on Apostichopus japonicus
Yu, J., Jiang, C., Sakai, Y., Mino, S., & Sawabe, T. (2026) · Current Microbiology · doi:10.1007/s00284-026-04888-0 · Cited by 1
Antimicrobial residues in the food chain
Silley, P. (2013) · Food Security · doi:10.1007/s12571-013-0250-3 · Cited by 1
“This flora provides important functions to the host, playing a crucial role in maintaining health by preventing colonisation by pathogens, degrading dietary and in situ produced compounds, producing nutrients and shaping and maintaining the normal mucosal immunity (Flint 2006; Hooper 2004).”
BackgroundProbiotics and Inflammatory Immune Responses
Grangette, C. (2010) · Humana Press eBooks · doi:10.1007/978-1-60761-061-8_32 · Cited by 1
“As such, this complex ecosystem plays an important role in normal gut functioning and in the maintenance of intestinal homeostasis ( 4 , 5). This bacteria–host mutualism serves numerous important functions for the host, including the maintenance of a physical barrier against colonization or invasion by pathogens, the…”
BackgroundThe Developing Intestinal Microbiome
Neu, J., Young, C., & Mai, V. (2011) · Avery's Diseases of the Newborn · doi:10.1016/b978-1-4377-0134-0.10072-1 · Cited by 1
Neurodevelopment, Intestinal Function, and Autism
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“Microbe colonization after birth and gut microbiota assembly in the first 3 years of life, can shape development of the gut [42,43], endocrine system [36], and brain [38,44,45].”
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“Such B-cells produce IgA which is transported to the mucosal surface and passes immunological information between different organs (Bingula et al ., 2017).”
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“Bacterial colonization of GF animals plays a crucial role in gene expression of several components of immune 30–32 and intestinal epithelial differentiation 33 systems.”
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“With age of humans the species composition of bacteria in the gut is changing [1-4].”
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Microbial regulation of PPARgamma : Nuclear receptor networks important for colonic homeostasis
Aronsson, L. (2008) · Figshare
Pesonen, M. (2008) · Työväentutkimus Vuosikirja
Korecka, A. (2014) · Figshare
The Gut Microbiota and its Contribution to Homeostasis
Schnupf, P., & Sansonetti, P. J. (2010) · Wiley eBooks · doi:10.1002/9783527629664.ch9
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Neu, J. (2009) · Humana Press eBooks · doi:10.1007/978-1-60327-289-6_7
“[ 4 , 5] This chapter is intended to present various aspects of neonatal intestinal microbial colonization, the effects of microbes on the development of the gastrointestinal (GI) tract, the role of early microflora and its manipulation on short-term and later disease development, and the role and mechanisms of probio…”
BackgroundLumen illuminated : Intestinal defense mechanisms in the neonate
Puiman, P. J. (2010) · RePub (Erasmus University Rotterdam)
Neonate Antigen Presenting Cells within Murine Intestinal Muscular Layer
Cruz-Morales, E., Meza‐Perez, S., Calderón‐Amador, J., Flores‐Langarica, A., & Flores‐Romo, L. (2011) · Immunological Investigations · doi:10.3109/08820139.2011.586394
“The commensal microbiota is important for the intestine development since they contribute to vascular growth (Hooper, 2004), promote T cell gut homing (Williams, 2006) and help to substance degradation of several molecules crucial for nurture (Hill, 1997; Savage, 1986).”
BackgroundInnate immunity: past, present and future
Wren, B. W. (2005) · Molecular Immunology · doi:10.1016/j.molimm.2004.12.007
Towards accessing the proteolytic potential of the gut microbiota
Morris, L. S. (2014) · ORCA Online Research @Cardiff (Cardiff University)
Mini review A dynamic partnership: Celebratingour g ut flora
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Effects of fiber and food form on satiety and energy intake in healthy human subjects
Korczak, R. (2013) · University of Minnesota Digital Conservancy (University of Minnesota)
Towards in vivo editing of the human microbiome
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Hevosen ruokinta, terveys ja suolistomikrobisto
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Haileselassie, Y. (2016) · DiVA (Stockholm University)
The Importance of Microbiota and Host Interactions Throughout Life
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Microbial Dynamics within Shed Mucosal Secretions of Hirudo verbana, the European Medicinal Leech
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Fecal Microbial Composition in Relation to Diet and Body Mass Index
Su, W. J. (2012) · TSpace (University of Toronto)
Coupling of Proton Transfer and Multidrug Expulsion in the Inner Membrane Translocase AcrB
Fischer, N. (2013) · bonndoc (University of Bonn)
Celiac Disease and Imbalance of Intestinal Flora
Taufner, G. H. (2017) · Advances in Biotechnology & Microbiology · doi:10.19080/aibm.2017.02.555588
“In immunogenic processes, we highlight its role in protecting intestinal lumen epithelium by competing with microorganisms that may cause opportunistic infections, production and secretion of bacteriocins, stimulation of antimicrobial peptide production by epithelial cells, IgA synthesis and the promotion of good func…”
Background
Metadata
- Authors
- Hooper, L.
- Affiliations
- The University of Texas Southwestern Medical Center (US)
- Corresponding author
- Hooper, L
- ORCID
- Hooper, L
- Venue
- Trends in Microbiology
- Publisher
- Elsevier BV
- Published
- 2004-03
- Volume
- 12
- Issue
- 3
- Pages
- 129-134
- ISSN
- 0966-842X (ISSN-L)
- OpenAlex
- W1965895403
- Cited by
- 541
- References
- 43
- Citations by year
- 2026: 6 · 2025: 8 · 2024: 27 · 2023: 23 · 2022: 22 · 2021: 24 · 2020: 34 · 2019: 20 · 2018: 31 · 2017: 17 · 2016: 25 · 2015: 26 · 2014: 32 · 2013: 34 · 2012: 31
- FWCI
- 6.74
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Trends in Microbiology (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Health Sciences › Nursing › Nutrition and Dietetics › Infant Nutrition and Health
- Life Sciences › Agricultural and Biological Sciences › Animal Science and Zoology › Animal Nutrition and Physiology
- Keywords
- gut microbiota, intestinal development, host-microbe interactions, postnatal development, microbial colonization
- MeSH terms
- Animals, Bacteria, Digestive System, Digestive System Physiological Phenomena, Biological Evolution, Mammals, Bacterial Physiological Phenomena
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