The DOI matches its Crossref record; 96 of the 96 references it cites were found in a registry or an index.
The rhizosphere microbiome and plant health
Open accessAbstract
The diversity of microbes associated with plant roots is enormous, in the order of tens of thousands of species. This complex plant-associated microbial community, also referred to as the second genome of the plant, is crucial for plant health. Recent advances in plant-microbe interactions research revealed that plants are able to shape their rhizosphere microbiome, as evidenced by the fact that different plant species host specific microbial communities when grown on the same soil. In this review, we discuss evidence that upon pathogen or insect attack, plants are able to recruit protective microorganisms, and enhance microbial activity to suppress pathogens in the rhizosphere. A comprehensive understanding of the mechanisms that govern selection and activity of microbial communities by plant roots will provide new opportunities to increase crop production.
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“Microbiomes of plants, rhizosphere, or soil have been elucidated by large-scale, DNA sequencing-based metagenomics approaches [7, 15, 16], but the contributions and functions of the large majority of the species are still mostly unknown.”
From Competition assays and physiological experiments of soil and phyllosphere yeasts identify Candida subhashii as a novel antagonist of filamentous fungi (2017) · cites this paper as [16]
Citations
Cites
Enterotypes of the human gut microbiome
MetaHIT Consortium (additional members), Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., et al. (2011) · Nature · doi:10.1038/nature09944 · Cited by 7,548
Van Der Heijden, M. G. A., Bardgett, R. D., & Van Straalen, N. M. (2008) · Ecology Letters · doi:10.1111/j.1461-0248.2007.01139.x · Cited by 5,053
THE ROLE OF ROOT EXUDATES IN RHIZOSPHERE INTERACTIONS WITH PLANTS AND OTHER ORGANISMS
Bais, H. P., Weir, T. L., Perry, L. G., Gilroy, S., & Vivanco, J. M. (2006) · Annual Review of Plant Biology · doi:10.1146/annurev.arplant.57.032905.105159 · Cited by 4,682
Plant-Growth-Promoting Rhizobacteria
Lugtenberg, B. J. J., & Kamilova, F. D. (2009) · Annual Review of Microbiology · doi:10.1146/annurev.micro.62.081307.162918 · Cited by 4,182
Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine
Ley, R. E., Peterson, D. A., & Gordon, J. I. (2006) · Cell · doi:10.1016/j.cell.2006.02.017 · Cited by 3,358
Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
Mendes, R., Kruijt, M., de Bruijn, I., Dekkers, E., van der Voort, M., Schneider, J. H. M., Piceno, Y. M., DeSantis, T. Z., Andersen, G. L., Bakker, P. A. H. M., et al. (2011) · Science · doi:10.1126/science.1203980 · Cited by 2,856
Self-citationNetworking by small-molecule hormones in plant immunity
Pieterse, C. M. J., León-Reyes, A., der Ent, S. V., & Wees, S. C. M. V. (2009) · Nature Chemical Biology · doi:10.1038/nchembio.164 · Cited by 2,382
Self-citationBerg, G., & Smalla, K. (2009) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2009.00654.x · Cited by 2,276
Pyrosequencing enumerates and contrasts soil microbial diversity
Roesch, L. F. W., Fulthorpe, R. R., Riva, A., Casella, G., Hadwin, A. K. M., Kent, A. D., Daroub, S. H., Camargo, F. A. D. O., Farmerie, W. G., & Triplett, E. W. (2007) · The ISME Journal · doi:10.1038/ismej.2007.53 · Cited by 1,891
M ICROBIAL P OPULATIONS R ESPONSIBLE FOR S PECIFIC S OIL S UPPRESSIVENESS TO P LANT P ATHOGENS
Weller, D. M., Raaijmakers, J. M., Gardener, B. B. M., & Thomashow, L. S. (2002) · Annual Review of Phytopathology · doi:10.1146/annurev.phyto.40.030402.110010 · Cited by 1,732
Cited by
Sorted by citations
Going back to the roots: the microbial ecology of the rhizosphere
Philippot, L., Raaijmakers, J. M., Lemanceau, P., & van der Putten, W. H. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro3109 · Cited by 4,085
Structure and functions of the bacterial microbiota of plants
Bulgarelli, D., Schlaeppi, K., Spaepen, S., van Themaat, E. V. L., & Schulze-Lefert, P. (2013) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050312-120106 · Cited by 3,308
Induced systemic resistance by beneficial microbes
Pieterse, C. M. J., Zamioudis, C., Berendsen, R. L., Weller, D. M., Van Wees, S. C. M., & Bakker, P. A. H. M. (2014) · Annual Review of Phytopathology · doi:10.1146/annurev-phyto-082712-102340 · Cited by 3,272
Self-citationHormonal Modulation of Plant Immunity
Pieterse, C. M. J., van der Does, D., Zamioudis, C., León-Reyes, A., & Wees, S. C. M. V. (2011) · Annual Review of Cell and Developmental Biology · doi:10.1146/annurev-cellbio-092910-154055 · Cited by 3,128
Self-citationStructure, variation, and assembly of the root-associated microbiomes of rice
Edwards, J. A., Johnson, C. S., Santos‐Medellín, C., Lurie, E., Podishetty, N. K., Bhatnagar, S., Eisen, J. A., & Sundaresan, V. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1414592112 · Cited by 2,920
Metadata
- Authors
- Berendsen, R. L., Pieterse, C. M. J., & Bakker, P. A. H. M.
- Affiliations
- Utrecht University (NL)
- Venue
- Trends in Plant Science
- Publisher
- Elsevier BV
- Published
- 2012-08
- Volume
- 17
- Issue
- 8
- Pages
- 478-486
- ISSN
- 1360-1385 (ISSN-L)
- OpenAlex
- W2017387862
- Cited by
- 5,347
- References
- 96
- Citations by year
- 2026: 587 · 2025: 545 · 2024: 570 · 2023: 546 · 2022: 565 · 2021: 573 · 2020: 509 · 2019: 395 · 2018: 289 · 2017: 240 · 2016: 173 · 2015: 147 · 2014: 114 · 2013: 79 · 2012: 7
- FWCI
- 11.84
- Type
- journal article
- Language
- en
- Open access
- green
- dspace.library.uu.nl
- Licence
- Locations
- Trends in Plant Science (publishedVersion)
- PubMed (publishedVersion)
- Utrecht University Repository (Utrecht University) (submittedVersion)
- Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
- Funders
- FP7 Ideas: European Research Council (269072)
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant-Microbe Interactions and Immunity
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Mycorrhizal Fungi and Plant Interactions
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Legume Nitrogen Fixing Symbiosis
- Keywords
- rhizosphere microbiome, plant health, plant-microbe interactions, root-associated microorganisms, plant defense against pathogens, plant defense against insects, plant-associated microbial communities, crop production
- MeSH terms
- Anti-Infective Agents, Fungi, Plant Diseases, Plants, Pseudomonas, Rhizobiaceae, Soil Microbiology, Species Specificity, Plant Roots, Host-Pathogen Interactions, Metagenome, Microbial Interactions, Rhizosphere, Biota
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