The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Sequencing our way towards understanding global eukaryotic biodiversity
Open accessAbstract
Microscopic eukaryotes are abundant, diverse, and fill critical ecological roles across every ecosystem on earth, yet there is a well-recognized gap in our understanding of their global biodiversity. Fundamental advances in DNA sequencing and bioinformatics now allow accurate en masse biodiversity assessments of microscopic eukaryotes from environmental samples. Despite a promising outlook, the field of eukaryotic marker gene surveys faces significant challenges: how to generate data that is most useful to the community, especially in the face of evolving sequencing technology and bioinformatics pipelines, and how to incorporate an expanding number of target genes.
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Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
Self-citationGreengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., Huber, T., Dalevi, D., Hu, P., & Andersen, G. L. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.03006-05 · Cited by 10,891
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Huse, S. M., Welch, D. M., Morrison, H. G., & Sogin, M. L. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02193.x · Cited by 1,346
Hajibabaei, M., Shokralla, S., Zhou, X., Singer, G. A. C., & Baird, D. J. (2011) · PLoS ONE · doi:10.1371/journal.pone.0017497 · Cited by 584
Cited by
A general species delimitation method with applications to phylogenetic placements
Zhang, J., Kapli, P., Pavlidis, P., & Stamatakis, A. (2013) · Bioinformatics · doi:10.1093/bioinformatics/btt499 · Cited by 3,062
Environmental DNA metabarcoding: Transforming how we survey animal and plant communities
Deiner, K., Bik, H. M., Mächler, E., Seymour, M., Lacoursière‐Roussel, A., Altermatt, F., Creer, S., Bista, I., Lodge, D. M., de Vere, N., et al. (2017) · Molecular Ecology · doi:10.1111/mec.14350 · Cited by 1,918
Self-citationFungal community analysis by high‐throughput sequencing of amplified markers – a user's guide
Lindahl, B. D., Nilsson, R. H., Tedersoo, L., Abarenkov, K., Carlsen, T., Kjøller, R., Kõljalg, U., Pennanen, T., Rosendahl, S., Stenlid, J., et al. (2013) · New Phytologist · doi:10.1111/nph.12243 · Cited by 892
Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring
Yu, D. W., Ji, Y., Emerson, B. C., Wang, X., Ye, C., Yang, C., & Ding, Z. (2012) · Methods in Ecology and Evolution · doi:10.1111/j.2041-210x.2012.00198.x · Cited by 744
Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding
Ji, Y., Ashton, L., Pedley, S. M., Edwards, D. P., Tang, Y., Nakamura, A., Kitching, R., Dolman, P. M., Woodcock, P., Edwards, F. A., et al. (2013) · Ecology Letters · doi:10.1111/ele.12162 · Cited by 662
Metadata
- Authors
- Bik, H. M., Porazinska, D. L., Creer, S., Caporaso, J. G., Knight, R., & Thomas, W. K.
- Venue
- Trends in Ecology & Evolution
- Publisher
- Elsevier BV
- Published
- 2012-04
- Volume
- 27
- Issue
- 4
- Pages
- 233-243
- ISSN
- 0169-5347 (ISSN-L)
- OpenAlex
- W2049392778
- Cited by
- 491
- References
- 4
- FWCI
- 4.18
- Type
- journal article
- Language
- en
- Open access
- green
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