The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
Random forests for genomic data analysis
Open accessAbstract
Random forests (RF) is a popular tree-based ensemble machine learning tool that is highly data adaptive, applies to “large p , small n ” problems, and is able to account for correlation as well as interactions among features. This makes RF particularly appealing for high-dimensional genomic data analysis. In this article, we systematically review the applications and recent progresses of RF for genomic data, including prediction and classification, variable selection, pathway analysis, genetic association and epistasis detection, and unsupervised learning. ► Applications and recent progresses of random forests for genomic data analysis. ► Methods for variable selection by random forests and random survival forests. ► Classification and prediction of random forests using high-dimensional genomic data. ► Genetic association and epistasis detection using random forests on GWA data.
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Breiman, L. (2001) · Machine Learning · doi:10.1023/a:1010933404324 · Cited by 133,538
Breiman, L. (1996) · Machine Learning · doi:10.1007/bf00058655 · Cited by 16,325
MissForest—Non-parametric missing value imputation for mixed-type data
Stekhoven, D. J., & Bühlmann, P. (2012) · Bioinformatics · doi:10.1093/bioinformatics/btr597 · Cited by 6,156
Assessing the Performance of Prediction Models: A Framework for Traditional and Novel Measures
Steyerberg, E. W., Vickers, A. J., Cook, N. R., Gerds, T., Gonen, M., Obuchowski, N., Pencina, M. J., & Kattan, M. W. (2010) · Epidemiology · doi:10.1097/ede.0b013e3181c30fb2 · Cited by 5,170
Ishwaran, H., Kogalur, U. B., Blackstone, E. H., & Lauer, M. S. (2008) · The Annals of Applied Statistics · doi:10.1214/08-aoas169 · Cited by 2,714
Self-citationVariable selection using random forests
Genuer, R., Poggi, J.-M., & Tuleau-Malot, C. (2010) · Pattern Recognition Letters · doi:10.1016/j.patrec.2010.03.014 · Cited by 2,619
Detecting gene–gene interactions that underlie human diseases
Cordell, H. J. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2579 · Cited by 1,350
Random Forests and Adaptive Nearest Neighbors
Lin, Y., & Jeon, Y. (2006) · Journal of the American Statistical Association · doi:10.1198/016214505000001230 · Cited by 507
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Metadata
- Authors
- Chen, X., & Ishwaran, H.
- Venue
- Genomics
- Publisher
- Elsevier BV
- Published
- 2012-06
- Volume
- 99
- Issue
- 6
- Pages
- 323-329
- ISSN
- 0888-7543 (ISSN-L)
- OpenAlex
- W2091374137
- Cited by
- 953
- References
- 8
- FWCI
- 16.18
- Type
- journal article
- Language
- en
- Open access
- hybrid
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