The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
COMPASS: A Tool for Comparison of Multiple Protein Alignments with Assessment of Statistical Significance
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Citations
Cites
Protein Structure Comparison by Alignment of Distance Matrices
Holm, L., & Sander, C. (1993) · Journal of Molecular Biology · doi:10.1006/jmbi.1993.1489 · Cited by 3,984 · cited 1×
“In both cases, we based our evaluation on the comparison of the produced alignments to the structural alignments from the FSSP database(43,44) generated by the DALI method.(45) The results of the evaluation were compared to the results for the corresponding sequence–profile comparisons by PSI-BLAST, and to the results…”
Result
Cited by
MUSCLE: multiple sequence alignment with high accuracy and high throughput
Edgar, R. C. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh340 · Cited by 44,662
HH-suite3 for fast remote homology detection and deep protein annotation
Steinegger, M., Meier, M., Mirdita, M., Vöhringer, H., Haunsberger, S. J., & Söding, J. (2019) · BMC Bioinformatics · doi:10.1186/s12859-019-3019-7 · Cited by 1,145
Advances in protein structure prediction and design
Kuhlman, B., & Bradley, P. (2019) · Nature Reviews Molecular Cell Biology · doi:10.1038/s41580-019-0163-x · Cited by 806
Comparative protein structure modeling using MODELLER
Webb, B., & Sali, A. (2016) · Current Protocols in Protein Science · doi:10.1002/cpps.20 · Cited by 730
“…number of variants of profile-profile alignment methods that differ in the scoring functions they use (Pietrokovski, 1996; Rychlewski et al., 1998; Yona and Levitt, 2002; Panchenko, 2003; Sadreyev and Grishin, 2003; von Ohsen et al., 2003; Edgar, 2004; Marti-Renom et al., 2004; Zhou and Zhou, 2005).”
BackgroundContrastive learning on protein embeddings enlightens midnight zone
(2022) · doi:10.1093/nargab/lqac043 · Cited by 105
Metadata
- Authors
- Sadreyev, R., & Grishin, N.
- Venue
- Journal of Molecular Biology
- Publisher
- Elsevier BV
- Published
- 2003-02
- Volume
- 326
- Issue
- 1
- Pages
- 317-336
- ISSN
- 0022-2836 (ISSN-L)
- OpenAlex
- W2062693912
- Cited by
- 278
- References
- 1
- FWCI
- 8.26
- Type
- journal article
- Language
- en
- Open access
- closed
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Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
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- CoChat. (2026). Citation check: COMPASS: A Tool for Comparison of Multiple Protein Alignments with Assessment of Statistical Significance. https://app.cochat.ai/papers/10.1016/s0022-2836(02)01371-2
- The paper
- Sadreyev, R., & Grishin, N. (2003). COMPASS: A Tool for Comparison of Multiple Protein Alignments with Assessment of Statistical Significance. Journal of Molecular Biology. https://doi.org/10.1016/s0022-2836(02)01371-2
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
