CoChat
Sign Up
Cited by 9

The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.

Chapter 9 Monitoring Organelle Turnover in Yeast Using Fluorescent Protein Tags

Devenish, Rodney J., Prescott, Mark, Turcic, Kristina, Mijaljica, Dalibor·2008·Methods in Enzymology
DOI 10.1016/s0076-6879(08)03209-6
Open this paper in CoChat — free account

Overview

Integrity signals

Registry

Crossref · 10.1016/s0076-6879(08)03209-6

Cites

3 of 3 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

We couldn’t retrieve this paper’s full text, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Show all 3 references

Research works printed but not linked: 47

  1. Aitchison, 1996, Kap104p: A karyopherin involved in the nuclear transport of messenger RNA binding proteins, Science, 274, 624, 10.1126/science.274.5287.624 · DOI
  2. Anderson, 1993, NAB2: A yeast nuclear polyadenylated RNA‐binding protein essential for cell viability, Mol. Cell Biol., 13, 2730, 10.1128/MCB.13.5.2730 · DOI
  3. Arnold, 2002, Membrane protein degradation by AAA proteases in mitochondria, Biochim. Biophys. Acta., 1592, 89, 10.1016/S0167-4889(02)00267-7 · DOI
  4. Beau, 2008, Lost to translation: When autophagy targets mature ribosomes, Trends Cell Biol., 18, 311, 10.1016/j.tcb.2008.05.001 · DOI
  5. Bernales, 2007, ER‐phagy: Selective autophagy of the endoplasmic reticulum, Autophagy, 3, 285, 10.4161/auto.3930 · DOI
  6. Bevis, 2002, Rapidly maturing variants of the Discosoma red fluorescent protein (DsRed), Nature Biotech., 20, 83, 10.1038/nbt0102-83 · DOI
  7. Cao, 2007, Atg26 is not involved in autophagy‐related pathways in Saccharomyces cerevisiae, Autophagy, 3, 17, 10.4161/auto.3371 · DOI
  8. Dunn, 2005, Pexophagy: The selective autophagy of peroxisomes, Autophagy, 1, 75, 10.4161/auto.1.2.1737 · DOI · Paper page
  9. Gavin, 2002, An approach for reducing unwanted oligomerisation of DsRed fusion proteins, Biochem. Biophys. Res. Commun., 298, 707, 10.1016/S0006-291X(02)02552-4 · DOI
  10. Gietz, 2007, Frozen competent yeast cells that can be transformed with high efficiency using the LiAc/SS carrier DNA/PEG method, Nat. Protoc., 2, 1, 10.1038/nprot.2007.17 · DOI
  11. Gietz, 2002, Transformation of yeast by lithium acetate/single‐stranded carrier DNA/polyethylene glycol method, Methods Enzymol., 350, 87, 10.1016/S0076-6879(02)50957-5 · DOI
  12. Hamasaki, 2005, Starvation triggers the delivery of the endoplasmic reticulum to the vacuole via autophagy in yeast, Traffic, 6, 56, 10.1111/j.1600-0854.2004.00245.x · DOI
  13. Jakobs, 2000, EGFP and DsRed expressing cultures of Escherichia coli imaged by confocal, two‐photon and fluorescence lifetime microscop, FEBS Lett., 479, 131, 10.1016/S0014-5793(00)01896-2 · DOI
  14. Katayama, 2008, GFP‐like proteins stably accumulate in lysosomes, Cell Struct. Funct., 33, 1, 10.1247/csf.07011 · DOI
  15. Kirkegaard, 2004, Cellular autophagy: Surrender, avoidance and subversion by microorganisms, Nat. Rev. Microbiol., 2, 301, 10.1038/nrmicro865 · DOI
  16. Kiššová, 2004, Uth1p is involved in the autophagic degradation of mitochondria, J. Biol. Chem., 279, 39068, 10.1074/jbc.M406960200 · DOI
  17. Kiššová, 2007, Selective and non‐selective degradation of mitochondria in yeast, Autophagy, 3, 329, 10.4161/auto.4034 · DOI
  18. Klionsky, 2005, The correct way to monitor autophagy in higher eukaryotes, Autophagy, 1, 65, 10.4161/auto.1.2.1899 · DOI
  19. Klionsky, 2007, Methods for monitoring autophagy from yeast to human, Autophagy, 3, 181, 10.4161/auto.3678 · DOI · Paper page
  20. Klionsky, 2008, Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes, Autophagy, 4, 151, 10.4161/auto.5338 · DOI · Paper page
  21. Kvam, 2007, Nucleus‐vacuole junctions and piecemeal microautophagy of the nucleus in S. cerevisiae, Autophagy, 3, 85, 10.4161/auto.3586 · DOI
  22. Linnane, 1975, Isolation of mitochondria and techniques for studying mitochondrial biogenesis in yeasts, Methods Cell Biol., 12, 285, 10.1016/S0091-679X(08)60961-9 · DOI
  23. Meijer, 2007, ATG genes involved in non‐selective autophagy are conserved from yeast to man, but the selective Cvt and pexophagy pathways also require organism‐specific genes, Autophagy, 3, 106, 10.4161/auto.3595 · DOI
  24. Mijaljica, 2006, Endoplasmic reticulum and Golgi complex: contributions to, and turnover by, autophagy, Traffic, 7, 1590, 10.1111/j.1600-0854.2006.00495.x · DOI
  25. Mijaljica, 2007, Autophagy and vacuole homeostasis: A case for self‐degradation?, Autophagy, 3, 417, 10.4161/auto.4441 · DOI
  26. Mijaljica, 2007, Nibbling within the nucleus: Turnover of nuclear contents, Cell. Mol. Life Sci., 64, 581, 10.1007/s00018-007-6395-5 · DOI
  27. Mizushima, 2004, Methods for monitoring autophagy, Int. J. Biochem. Cell Biol., 36, 2491, 10.1016/j.biocel.2004.02.005 · DOI
  28. Neutzner, 2007, Outer mitochondrial membrane protein degradation by the proteasome, Novartis Found. Symp., 287, 4, 10.1002/9780470725207.ch2 · DOI
  29. Nowikovsky, 2007, Mdm38 protein depletion causes loss of mitochondrial K+/H+ exchange activity, osmotic swelling and mitophagy, Cell Death Differ., 14, 1647, 10.1038/sj.cdd.4402167 · DOI · Paper page
  30. Pan, 2000, Nucleus‐vacuole junctions in Saccharomyces cerevisiae are formed through the direct interaction of Vac8p with Nvj1p, Mol. Biol. Cell, 11, 2445, 10.1091/mbc.11.7.2445 · DOI
  31. Pelham, 1988, Sorting of soluble ER proteins in yeast, EMBO J., 7, 1757, 10.1002/j.1460-2075.1988.tb03005.x · DOI
  32. Petrova, 2004, Dual targeting of yeast catalase A to peroxisomes and mitochondria, Biochem. J., 380, 393, 10.1042/bj20040042 · DOI
  33. Prescott, 2006, Recent advances in all‐protein chromophore technology, 31, 10.1016/S1387-2656(06)12002-5 · DOI
  34. Prinz, 2000, Mutants affecting the structure of the cortical endoplasmic reticulum in Saccharomyces cerevisiae, J. Cell Biol., 150, 461, 10.1083/jcb.150.3.461 · DOI
  35. Proudlock, 1971, Biogenesis of mitochondria. 19. The effects of unsaturated fatty acid depletion on the lipid composition and energy metabolism of a fatty acid desaturase mutant of Saccharomyces cerevisiae, J. Bioenerg. Biomembr., 2, 327, 10.1007/BF01963829 · DOI
  36. Rachubinski, 1995, How proteins penetrate peroxisomes, Cell, 83, 525, 10.1016/0092-8674(95)90091-8 · DOI
  37. Reggiori, 2005, The actin cytoskeleton is required for selective types of autophagy, but not nonspecific autophagy, in the yeast Saccharomyces cerevisiae, Mol. Biol. Cell, 16, 5843, 10.1091/mbc.E05-07-0629 · DOI · Paper page
  38. Roberts, 2003, Piecemeal microautophagy of nucleus in Saccharomyces cerevisiae, Mol. Biol. Cell, 14, 129, 10.1091/mbc.E02-08-0483 · DOI · Paper page
  39. Rossanese, 2001, A role for actin, Cdc1p, and Myo2p in the inheritance of late Golgi elements in Saccharomyces cerevisiae, J. Cell Biol., 153, 47, 10.1083/jcb.153.1.47 · DOI
  40. Sato, 1997, Rer1p as common machinery for the endoplasmic reticulum localization of membrane proteins, Proc. Natl. Acad. Sci. USA, 94, 9693, 10.1073/pnas.94.18.9693 · DOI
  41. Sato, 2003, Rer1p, a retrieval receptor for ER membrane proteins, recognizes transmembrane domains in multiple modes, Mol. Biol. Cell, 14, 3605, 10.1091/mbc.E02-12-0777 · DOI
  42. Siomi, 1998, Functional conservation of the transportin nuclear import pathway in divergent organisms, Mol. Cell Biol., 18, 4141, 10.1128/MCB.18.7.4141 · DOI
  43. Tsien, 1998, The green fluorescent protein, Annu. Rev. Biochem., 67, 509, 10.1146/annurev.biochem.67.1.509 · DOI
  44. van der Vaart, 2008, A picky eater: Exploring the mechanisms of selective autophagy in human pathologies, Traffic, 9, 281, 10.1111/j.1600-0854.2007.00674.x · DOI
  45. Vida, 1995, A new vital stain for visualising vacuolar membrane dynamics and endocytosis in yeast, J. Cell Biol., 128, 779, 10.1083/jcb.128.5.779 · DOI
  46. Wang, 2003, The molecular mechanism of autophagy, Mol. Med., 9, 65, 10.1007/BF03402040 · DOI
  47. Yorimitsu, 2005, Autophagy: Molecular machinery for self‐eating, Cell Death Differ., 12, 1542, 10.1038/sj.cdd.4401765 · DOI

Cited by

Sorted by citations

Metadata

Authors
Devenish, R. J., Prescott, M., Turcic, K., & Mijaljica, D.
Venue
Methods in Enzymology
Publisher
Elsevier
Published
2008
Pages
109-131
ISSN
0076-6879
DOI
10.1016/s0076-6879(08)03209-6
Cited by
9
References
3
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review