Cited by 42Protease and Inhibitor MechanismsAlzheimer's disease research and treatmentsAmyotrophic Lateral Sclerosis Research

Multi-Granulin Domain Peptides Bind to Pro-Cathepsin D and Stimulate Its Enzymatic Activity More Effectively Than Progranulin in Vitro

Open access
Butler, Victoria J., Cortopassi, Wilian A., Gururaj, Sushmitha, Wang, Austin L., Pierce, Olivia M., Jacobson, Matthew P., Kao, Aimee W.·2019·Biochemistry

Abstract

Progranulin (PGRN) is an evolutionarily conserved glycoprotein associated with several disease states, including neurodegeneration, cancer, and autoimmune disorders. This protein has recently been implicated in the regulation of lysosome function, whereby PGRN may bind to and promote the maturation and activity of the aspartyl protease cathepsin D (proCTSD, inactive precursor; matCTSD, mature, enzymatically active form). As the full-length PGRN protein can be cleaved into smaller peptides, called granulins, we assessed the function of these granulin peptides in binding to proCTSD and stimulating matCTSD enzyme activity in vitro. Here, we report that full-length PGRN and multi-granulin domain peptides bound to proCTSD with low to submicromolar binding affinities. This binding promoted proCTSD destabilization, the magnitude of which was greater for multi-granulin domain peptides than for full-length PGRN. Such destabilization correlated with enhanced matCTSD activity at acidic pH. The presence and function of multi-granulin domain peptides have typically been overlooked in previous studies. This work provides the first in vitro quantification of their binding and activity on proCTSD. Our study highlights the significance of multi-granulin domain peptides in the regulation of proCTSD maturation and enzymatic activity and suggests that attention to PGRN processing will be essential for the future understanding of the molecular mechanisms leading to neurodegenerative disease states with loss-of-function mutations in PGRN.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1021/acs.biochem.9b00275

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • The balance between cell proliferation and programmed cell death is altered in LSDs as well as neurodegenerative disorders.

    “The balance between cell proliferation and programmed cell death is altered in LSDs as well as neurodegenerative disorders.26,27”

    From The lysosome and proteostatic stress at the intersection of pediatric neurological disorders and adult neurodegenerative diseases (2025) · cites this paper as [26]

    The paper’s Abstract discusses progranulin, lysosomal function, and neurodegenerative disease, and mentions that granulins may affect cell growth. It does not address whether the balance between cell proliferation and programmed cell death is altered in lysosomal storage diseases or neurodegenerative disorders. Searches for that balance and for apoptosis in those diseases found no supporting passage in our copy. (LLM, conf=0.74)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 33

  1. [1]Bateman A and Bennett HP, The granulin gene family: from cancer to dementia. Bioessays, 2009 31(11): p. 1245– 54. 19795409
  2. [2]Kao AW,, Progranulin, lysosomal regulation and neurodegenerative disease. Nat Rev Neurosci, 2017. PMC6040832 28435163
  3. [3]Tanaka Y,, Progranulin regulates lysosomal function and biogenesis through acidification of lysosomes. Hum Mol Genet, 2017. 28073925
  4. [4]Smith KR,, Strikingly different clinicopathological phenotypes determined by progranulin-mutation dosage. Am J Hum Genet, 2012 90(6): p. 1102– 7. 22608501 PMC3370276
  5. [5]Evers BM,, Lipidomic and Transcriptomic Basis of Lysosomal Dysfunction in Progranulin Deficiency. Cell Rep, 2017 20(11): p. 2565– 2574. 28903038 PMC5757843
  6. [7]Arrant AE,, Progranulin Gene Therapy Improves Lysosomal Dysfunction and Microglial Pathology Associated with Frontotemporal Dementia and Neuronal Ceroid Lipofuscinosis. J Neurosci, 2018 38(9): p. 2341– 2358. 29378861 PMC5830520
  7. [8]Beel S,, Progranulin functions as a cathepsin D chaperone to stimulate axonal outgrowth in vivo. Hum Mol Genet, 2017 26(15): p. 2850– 2863. 28453791 PMC5886064
  8. [9]Butler VJ,, Progranulin Stimulates the In Vitro Maturation of Pro-Cathepsin D at Acidic pH. J Mol Biol, 2019 431(5): p. 1038– 1047. 30690031 PMC6613950
  9. [10]Valdez C,, Progranulin-mediated deficiency of cathepsin D results in FTD and NCL-like phenotypes in neurons derived from FTD patients. Hum Mol Genet, 2017. PMC5886207 29036611
  10. [11]Zhou X,, Regulation of cathepsin D activity by the FTLD protein progranulin. Acta Neuropathol, 2017 134(1): p. 151– 153. 28493053 PMC5568051
  11. [13]Cruts M,, Null mutations in progranulin cause ubiquitin-positive frontotemporal dementia linked to chromosome 17q21. Nature, 2006 442(7501): p. 920– 4. 16862115
  12. [14]Plowman GD,, The epithelin precursor encodes two proteins with opposing activities on epithelial cell growth. J Biol Chem, 1992 267(18): p. 13073– 8. 1618805
  13. [15]Cenik B,, Progranulin: a proteolytically processed protein at the crossroads of inflammation and neurodegeneration. J Biol Chem, 2012 287(39): p. 32298– 306. 22859297 PMC3463300
  14. [16]Bateman A and Bennett HP, Granulins: the structure and function of an emerging family of growth factors. J Endocrinol, 1998 158(2): p. 145– 51. 9771457
  15. [17]Tolkatchev D,, Structure dissection of human progranulin identifies well-folded granulin/epithelin modules with unique functional activities. Protein Sci, 2008 17(4): p. 711– 24. 18359860 PMC2271164
  16. [18]Tolkatchev D,, Design and solution structure of a well-folded stack of two beta-hairpins based on the amino-terminal fragment of human granulin A. Biochemistry, 2000 39(11): p. 2878– 86. 10715107
  17. [19]Palfree RG, Bennett HP, and Bateman A, The Evolution of the Secreted Regulatory Protein Progranulin. PLoS One, 2015 10(8): p. e0133749. 26248158 PMC4527844
  18. [20]Lavergne V, Taft RJ, and Alewood PF, Cysteine-rich mini-proteins in human biology. Curr Top Med Chem, 2012 12(14): p. 1514– 33. 22827521
  19. [21]Holler CJ,, Intracellular Proteolysis of Progranulin Generates Stable, Lysosomal Granulins that Are Haploinsufficient in Patients with Frontotemporal Dementia Caused by GRN Mutations. eNeuro, 2017 4(4). PMC5562298 28828399
  20. [22]Lee CW,, The lysosomal protein cathepsin L is a progranulin protease. Mol Neurodegener, 2017 12(1): p. 55. 28743268 PMC5526245
  21. [23]Zhou X,, Lysosomal processing of progranulin. Mol Neurodegener, 2017 12(1): p. 62. 28835281 PMC5569495
  22. [24]Zhu J,, Conversion of proepithelin to epithelins: roles of SLPI and elastase in host defense and wound repair. Cell, 2002 111(6): p. 867– 78. 12526812
  23. [25]Salazar N,, The progranulin cleavage products, granulins, exacerbate TDP-43 toxicity and increase TDP-43 levels. J. Neurosci, 2015 35(25): p. 9315– 9328. 26109656 PMC4478251
  24. [26]Wienken CJ,, Protein-binding assays in biological liquids using microscale thermophoresis. Nat Commun, 2010 1: p. 100. 20981028
  25. [27]Hasilik A,, Lysosomal enzyme precursors in human fibroblasts. Activation of cathepsin D precursor in vitro and activity of beta-hexosaminidase A precursor towards ganglioside GM2. Eur J Biochem, 1982 125(2): p. 317– 21. 6214395
  26. [28]James MN and Sielecki AR, Molecular structure of an aspartic proteinase zymogen, porcine pepsinogen, at 1.8 A resolution. Nature, 1986 319(6048): p. 33– 8. 3941737
  27. [29]Wittlin S,, Mechanisms and kinetics of procathepsin D activation. Eur J Biochem, 1999 265(1): p. 384– 93. 10491196
  28. [30]Nguyen AD,, Secreted progranulin is a homodimer and is not a component of high density lipoproteins (HDL). J Biol Chem, 2013 288(12): p. 8627– 35. 23364791 PMC3605681
  29. [31]Reinke AW,, Networks of bZIP protein-protein interactions diversified over a billion years of evolution. Science, 2013 340(6133): p. 730– 4. 23661758 PMC4115154
  30. [32]Song Y,, Protein interaction affinity determination by quantitative FRET technology. Biotechnol Bioeng, 2012 109(11): p. 2875– 83. 22711490
  31. [33]Mosesson MW, Fibrinogen and fibrin structure and functions. J Thromb Haemost, 2005 3(8): p. 1894– 904. 16102057
  32. [34]Boatright KM and Salvesen GS, Mechanisms of caspase activation. Curr Opin Cell Biol, 2003 15(6): p. 725– 31. 14644197
  33. [35]Jian J,, Progranulin directly binds to the CRD2 and CRD3 of TNFR extracellular domains. FEBS Lett, 2013 587(21): p. 3428– 36. 24070898 PMC3826980

Cited by

Sorted by citations

Authors
Butler, V. J., Cortopassi, W. A., Gururaj, S., Wang, A. L., Pierce, O. M., Jacobson, M. P., & Kao, A. W.
Affiliations
University of California, San Francisco (US)
Corresponding author
  • Jacobson, Matthew P.
  • Kao, Aimee W.
Venue
Biochemistry
Published
2019-05-17
Volume
58
Issue
23
Pages
2670-2674
ISSN
  • 0006-2960 (ISSN-L)
  • 1520-4995
OpenAlex
W2946706960
Cited by
42
References
2
Citations by year
2026: 4 · 2025: 6 · 2024: 4 · 2023: 6 · 2022: 4 · 2021: 10 · 2020: 5 · 2019: 3
FWCI
1.74
Type
journal article
Language
en
Open access
Locations
  • Biochemistry (publishedVersion)
  • PubMed (publishedVersion)
  • PubMed Central (acceptedVersion)
  • eScholarship (California Digital Library) (submittedVersion)
Funders
  • U.S. Department of Health and Human Services (R01NS095257, R21NS082709, R01AG059052)
  • Emory University
  • Paul G. Allen Family Foundation
  • James and Barbara Knuppe Family Foundation
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Protease and Inhibitor Mechanisms
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Health Sciences › Medicine › Neurology › Amyotrophic Lateral Sclerosis Research
Keywords
progranulin, cathepsin D, procathepsin D, enzyme activation, protein-protein binding, protein destabilization, lysosomal function, neurodegeneration, loss-of-function mutations
MeSH terms
Granulins, Cathepsin D, Enzyme Precursors, Humans, Protein Binding, Protein Conformation, Transition Temperature, Protein Stability

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review