Cause-and-effect analysis as a tool to improve the reproducibility of nanobioassays: four case studies
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One of the challenges in using in vitro data to understand the potential risks of engineered nanomaterials (ENMs) is that results often differ or are even contradictory among studies. While it is recognized that numerous factors can influence results produced by nanobioassays, there has not yet been a consistently used conceptual framework to identify key sources of variability in these assays. In this paper, we use cause-and-effect analysis to systematically describe sources of variability in four key in vitro nanobioassays: the 2′,7′-dichlorofluorescein assay, an enzyme-linked immunosorbent assay for measuring interleukin-8, a flow cytometry assay (Annexin V/propidium iodide), and the Comet assay. These assays measure end points that can occur in cells impacted by ENMs through oxidative stress, a principle mechanism for ENM toxicity. The results from this analysis identify control measurements to test for potential artifacts or biases that could occur during conduct of these assays with ENMs. Cause-and-effect analysis also reveals additional measurements that could be performed either in preliminary experiments or each time the assay is run to increase confidence in the assay results and their reproducibility within and among laboratories. The approach applied here with these four assays can be used to support the development of a broad range of nanobioassays.
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Petersen and colleagues discussed sources of variability in four distinct nano-bioassays.
“Recently, Petersen and colleagues very specifically discussed sources of variability in four distinct nano-bioassays (Petersen et al., 2019).”
From In Vitro research Reproducibility: Keeping up High Standards (2019) · cites this paper as Petersen et al., 2019
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Krug, H. F., & Wick, P. (2011) · Angewandte Chemie International Edition · doi:10.1002/anie.201001037 · Cited by 556 · see citing works
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In Vitro research Reproducibility: Keeping up High Standards
Hirsch, C., & Schildknecht, S. (2019) · Frontiers in Pharmacology · doi:10.3389/fphar.2019.01484 · Cited by 161 · see citing works
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- Authors
- Petersen, E. J., Hirsch, C., Elliott, J. T., Krug, H. F., Aengenheister, L., Arif, A. T., Bogni, A., Kinsner-Ovaskainen, A., May, S., Walser, T., Wick, P., & Roesslein, M.
- Affiliations
- National Institute of Standards and Technology (US)
- Empa (CH)
- NanoCASE GmbH, St. Gallerstr. 58, 9032 Engelburg, Switzerland
- University of Freiburg (DE)
- Joint Research Centre (IT)
- European Commission, Joint Research Centre (JRC), 21027 Ispra, Italy
- Vereala GmbH, Eyhof 34, 8047 Zürich, Switzerland
- Corresponding author
- Petersen, Elijah J.
- ORCID
- Venue
- Chemical Research in Toxicology
- Publisher
- American Chemical Society (ACS)
- Published
- 2019-09-11
- Volume
- 33
- Issue
- 5
- Pages
- 1039-1054
- ISSN
- 0893-228X (ISSN-L)
- 1520-5010
- OpenAlex
- W2973209080
- Cited by
- 35
- References
- 1
- Citations by year
- 2026: 1 · 2025: 3 · 2024: 4 · 2022: 12 · 2021: 7 · 2020: 6 · 2019: 2
- FWCI
- 0.34
- Type
- journal article
- Language
- en
- Open access
- green
- www.dora.lib4ri.ch
- Licence
- Locations
- Chemical Research in Toxicology (publishedVersion)
- PubMed (publishedVersion)
- DORA Empa (Swiss Federal Laboratories for Materials Science and Technology (Empa)) (submittedVersion, other-oa)
- Joint Research Centre (European Commission) (submittedVersion)
- Topics
- Physical Sciences › Materials Science › Materials Chemistry › Nanoparticles: synthesis and applications
- Health Sciences › Veterinary › Small Animals › Animal testing and alternatives
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Keywords
- cause-and-effect analysis, engineered nanomaterials, assay reproducibility, sources of variation, oxidative stress, interleukin-8, comet assay, in vitro toxicity testing, inter-laboratory variability
- MeSH terms
- Enzyme-Linked Immunosorbent Assay, Flow Cytometry, Fluoresceins, Fluorescent Dyes, Fluorometry, Humans, Reproducibility of Results, Interleukin-8, Comet Assay, Nanotechnology
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