Characterization of a Novel dUTP-Dependent Activity of CTP Synthetase from Saccharomyces cerevisiae
Abstract
CTP synthetase [EC 6.3.4.2, UTP:ammonia ligase (ADP-forming)] from the yeast Saccharomyces cerevisiae catalyzes the ATP-dependent transfer of the amide nitrogen from glutamine to the C-4 position of UTP to form CTP. In this work, we demonstrated that CTP synthetase utilized dUTP as a substrate to synthesize dCTP. The dUTP-dependent activity was linear with time and with enzyme concentration. Maximum dUTP-dependent activity was dependent on MgCl(2) (4 mM) and GTP (K(a) = 14 microM) at a pH optimum of 8.0. The apparent K(m) values for dUTP, ATP, and glutamine were 0.18, 0.25, and 0.41 mM, respectively. dUTP promoted the tetramerization of CTP synthetase, and the extent of enzyme tetramerization correlated with dUTP-dependent activity. dCTP was a poor inhibitor of dUTP-dependent activity, whereas CTP was a potent inhibitor of this activity. The enzyme catalyzed the synthesis of dCTP and CTP when dUTP and UTP were used as substrates together. CTP was the major product synthesized when dUTP and UTP were present at saturating concentrations. When dUTP and UTP were present at concentrations near their K(m) values, the synthesis of dCTP increased relative to that of CTP. The synthesis of dCTP was favored over the synthesis of CTP when UTP was present at a concentration near its K(m) value and dUTP was varied from subsaturating to saturating concentrations. These data suggested that the dUTP-dependent synthesis of dCTP by CTP synthetase activity may be physiologically relevant.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In S. cerevisiae and Lactococcus lactis, their respective CTP synthases have activity toward dUTP.
“In other organisms such as S. cerevisiae and Lactococcus lactis, their respective CTP synthases have activity toward dUTP Pappas et al. (1999); Willemoës and Sigurskjold (2002).”
From Fundamental behaviors emerge from simulations of a living minimal cell (2022) · cites this paper as Pappas et al. (1999)
Cites
dUTP pyrophosphatase is an essential enzyme in Saccharomyces cerevisiae.
Gadsden, M. H., McIntosh, E. M., Game, J. C., et al. (1993) · The EMBO Journal · doi:10.1002/j.1460-2075.1993.tb06127.x · Cited by 219 · see citing works
Shlomai, J., & Kornberg, A. (1978) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)40837-4 · Cited by 177 · see citing works
Effect of CTP Synthetase Regulation by CTP on Phospholipid Synthesis in Saccharomyces cerevisiae
Ostrander, D. B., O'Brien, D. J., Gorman, J. A., & Carman, G. M. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.30.18992 · Cited by 131 · see citing works
Self-citationBae-Lee, M. S., & Carman, G. M. (1984) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)90592-2 · Cited by 127 · see citing works
Self-citationThe effect of methotrexate on levels of dUTP in animal cells.
Goulian, M., Bleile, B., & Tseng, B. (1980) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)70353-6 · Cited by 125 · see citing works
Nucleotide sequence of Escherichia coli pyrG encoding CTP synthetase.
Weng, M., Makaroff, C. A., & Zalkin, H. (1986) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)57252-0 · Cited by 117 · see citing works
Purification and characterization of CDP-diacylglycerol synthase from Saccharomyces cerevisiae.
Kelley, M. J., & Carman, G. M. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)47833-7 · Cited by 86 · see citing works
Self-citationRegulation of Phospholipid Biosynthesis in Saccharomyces cerevisiae by CTP
McDonough, V. M., Buxeda, R. J., Bruno, M. E. C., et al. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.32.18774 · Cited by 73 · see citing works
Trach, K. A., Chapman, J. W., Piggot, P. J., et al. (1988) · Journal of Bacteriology · doi:10.1128/jb.170.9.4194-4208.1988 · Cited by 73 · see citing works
Ozier-Kalogéropoulos, O., Fasiolo, F., Adeline, M., Collin, J., & Lacroute, F. (1991) · Molecular and General Genetics MGG · doi:10.1007/bf00293815 · Cited by 68 · see citing works
Kennedy, E. P., Borkenhagen, L. F., & Smith, S. W. (1959) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)69855-2 · Cited by 64 · see citing works
Nucleotide-dependent Tetramerization of CTP Synthetase from Saccharomyces cerevisiae
Pappas, A., Yang, W., Park, T., et al. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.26.15954 · Cited by 59 · see citing works
Self-citationBiochemical characterization of the hamster thy mutator gene and its revertants.
Trudel, M., Genechten, T. V., & Meuth, M. (1984) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)43359-x · Cited by 55 · see citing works
dUTP pyrophosphatase as a potential target for chemotherapeutic drug development.
McIntosh, E. M., & Haynes, R. H. (1997) · Acta Biochimica Polonica · doi:10.18388/abp.1997_4410 · Cited by 53 · see citing works
Yamauchi, M., Yamauchi, N., & Meuth, M. (1990) · The EMBO Journal · doi:10.1002/j.1460-2075.1990.tb07377.x · Cited by 50 · see citing works
Lipids and membranes: past, present and future.
den Kamp, J. A. F. O., Roelofsen, B., & WIRTZ, K. W. A. (1986) · Cited by 45 · see citing works
Vincent, B. R. D. S., & Buttin, G. (1980) · Biochimica et Biophysica Acta (BBA) - Nucleic Acids and Protein Synthesis · doi:10.1016/0005-2787(80)90016-7 · Cited by 43 · see citing works
Aronow, B. J., Watts, T., Lassetter, J., et al. (1984) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(17)47261-9 · Cited by 41 · see citing works
Compartmentation of dCTP pools. Evidence from deoxyliponucleotide synthesis.
Spyrou, G., & Reichard, P. A. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)49273-3 · Cited by 38 · see citing works
In situ regulation of mammalian CTP synthetase by allosteric inhibition.
Aronow, B. J., & Ullman, B. (1987) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(18)61160-3 · Cited by 38 · see citing works
Cloning and Expression of the Chlamydia trachomatis Gene for CTP Synthetase
Tipples, G. A., & McClarty, G. A. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.14.7908 · Cited by 35 · see citing works
Yeast Mutant with Thermolabile CDP‐choline Synthesis
Nikawa, J., Yonemura, K., & Yamashita, S. (1983) · European Journal of Biochemistry · doi:10.1111/j.1432-1033.1983.tb07253.x · Cited by 34 · see citing works
Traut, T. W., & Evans, D. R. (1988) · Critical Reviews in Biochemistry and Molecular Biology · doi:10.3109/10409238809088318 · Cited by 30 · see citing works
Intracellular Compartmentation of Deoxycytidine Nucleotide Pools in S Phase Mouse 3T3 Fibroblasts
Spyrou, G., & Reichard, P. A. (1989) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)85037-8 · Cited by 26 · see citing works
Thomas, P. E., Lamb, B., & Chu, E. H. Y. (1988) · Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology · doi:10.1016/0167-4838(88)90042-8 · Cited by 26 · see citing works
Altered CTP synthetase activity confers resistance to 5-bromodeoxyuridine toxicity and mutagenesis
Kaufman, E. R. (1986) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/0027-5107(86)90096-5 · Cited by 26 · see citing works
HIV and human endogenous retroviruses: an hypothesis with therapeutic implications.
McIntosh, E. M., & Haynes, R. H. (1996) · Acta Biochimica Polonica · doi:10.18388/abp.1996_4454 · Cited by 26 · see citing works
Mutationtal specificity of thymine nucleotide depletion in yeast
Kohalmi, S. E., & Kunz, B. A. (1993) · Mutation research. Fundamental and molecular mechanisms of mutagenesis · doi:10.1016/0027-5107(93)90132-y · Cited by 6 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Classification and evolution of P-loop GTPases and related ATPases
Leipe, D. D., Wolf, Y. I., Koonin, E. V., & Aravind, L. (2002) · Journal of Molecular Biology · doi:10.1006/jmbi.2001.5378 · Cited by 1,148 · see citing works
Essential metabolism for a minimal cell
Breuer, M., Earnest, E. E., Merryman, C., Wise, K. S., Sun, L., Lynott, M. R., Hutchison, C. A., Smith, H. O., Lapek, J. D., Gonzalez, D. J., et al. (2019) · eLife · doi:10.7554/elife.36842 · Cited by 190 · see citing works
Fundamental behaviors emerge from simulations of a living minimal cell
Thornburg, Z. R., Bianchi, D. M., Brier, T. A., Gilbert, B. R., Earnest, E. E., Melo, M. C. R., Safronova, N., Sáenz, J. P., Cook, A. T., Wise, K. S., et al. (2022) · Cell · doi:10.1016/j.cell.2021.12.025 · Cited by 165 · see citing works
- Authors
- Pappas, A., Park, T.-S., & Carman, G. M.
- Affiliations
- Rutgers, The State University of New Jersey (US)
- Corresponding author
- Carman, George M.
- Venue
- Biochemistry
- Publisher
- American Chemical Society (ACS)
- Published
- 1999-11-24
- Volume
- 38
- Issue
- 50
- Pages
- 16671-16677
- ISSN
- 0006-2960 (ISSN-L)
- 1520-4995
- OpenAlex
- W2125945123
- Cited by
- 18
- References
- 28
- Citations by year
- 2024: 3 · 2022: 1 · 2020: 1 · 2019: 1 · 2013: 1
- FWCI
- 0.46
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Biochemistry (publishedVersion)
- PubMed (publishedVersion)
- Rutgers University Community Repository (Rutgers University) (submittedVersion)
- Funders
- National Institutes of Health
- U.S. Public Health Service
- National Institute of General Medical Sciences (GM-50679, R01GM050679)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Molecular Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Amino Acid Enzymes and Metabolism
- Physical Sciences › Chemistry › Organic Chemistry › Chemical Reaction Mechanisms
- Keywords
- CTP synthase, UTP, glutamine, enzyme inhibition, substrate specificity, Saccharomyces cerevisiae, nucleotide metabolism
- MeSH terms
- Chromatography, High Pressure Liquid, Cytidine Triphosphate, Deoxycytosine Nucleotides, Deoxyuracil Nucleotides, Enzyme Activation, Kinetics, Saccharomyces cerevisiae, Substrate Specificity, Dimerization, Carbon-Nitrogen Ligases
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review