The DOI matches its Crossref record; 19 of the 19 references it cites were found in a registry or an index.
Comparison of Fingerprint-Based Methods for Virtual Screening Using Multiple Bioactive Reference Structures
Abstract
Fingerprint-based similarity searching is widely used for virtual screening when only a single bioactive reference structure is available. This paper reviews three distinct ways of carrying out such searches when multiple bioactive reference structures are available: merging the individual fingerprints into a single combined fingerprint; applying data fusion to the similarity rankings resulting from individual similarity searches; and approximations to substructural analysis. Extended searches on the MDL Drug Data Report database suggest that fusing similarity scores is the most effective general approach, with the best individual results coming from the binary kernel discrimination technique.
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Cites
Willett, P., Barnard, J. M., & Downs, G. M. (1998) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci9800211 · Cited by 1,765
Self-citationAtom pairs as molecular features in structure-activity studies: definition and applications
Carhart, R. E., Smith, D. H., & Venkataraghavan, R. (1985) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci00046a002 · Cited by 1,066
Neighborhood Behavior: A Useful Concept for Validation of “Molecular Diversity” Descriptors
Patterson, D. E., Cramer, R. D., Ferguson, A. M., Clark, R. D., & Weinberger, L. E. (1996) · Journal of Medicinal Chemistry · doi:10.1021/jm960290n · Cited by 509
Sensor and Data Fusion Concepts and Applications
Klein, L. A. (1993) · Medical Entomology and Zoology · Cited by 451
Why do we need so many chemical similarity search methods?
Sheridan, R. (2002) · Drug Discovery Today · doi:10.1016/s1359-6446(02)02411-x · Cited by 412
Mason, J. S., Morize, I., Menard, P. R., Cheney, D. L., Hulme, C., & Labaudiniere, R. F. (1999) · Journal of Medicinal Chemistry · doi:10.1021/jm9806998 · Cited by 374
On the Properties of Bit String-Based Measures of Chemical Similarity
Flower, D. R. (1998) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci970437z · Cited by 345
How Does Consensus Scoring Work for Virtual Library Screening? An Idealized Computer Experiment
Wang, R., & Wang, S. (2001) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci010025x · Cited by 311
Similarity Metrics for Ligands Reflecting the Similarity of the Target Proteins
Schuffenhauer, A., Floersheim, P., Acklin, P., & Jacoby, E. (2003) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci025569t · Cited by 252
Self-citationStigmata: An Algorithm To Determine Structural Commonalities in Diverse Datasets
Shemetulskis, N. E., Weininger, D., Blankley, C. J., Yang, J. J., & Humblet, C. (1996) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci950169+ · Cited by 159
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Relating protein pharmacology by ligand chemistry
Keiser, M. J., Roth, B. L., Armbruster, B. N., Ernsberger, P., Irwin, J. J., & Shoichet, B. K. (2007) · Nature Biotechnology · doi:10.1038/nbt1284 · Cited by 2,402
Similarity-based virtual screening using 2D fingerprints
Willett, P. (2006) · Drug Discovery Today · doi:10.1016/j.drudis.2006.10.005 · Cited by 849
Self-citationRecognizing Pitfalls in Virtual Screening: A Critical Review
Scior, T., Bender, A., Tresadern, G., Medina-Franco, J. L., Martínez-Mayorga, K., Langer, T., Cuanalo-Contreras, K., & Agrafiotis, D. K. (2012) · Journal of Chemical Information and Modeling · doi:10.1021/ci200528d · Cited by 438
Bender, A., Mussa, H. Y., Glen, R. C., & Reiling, S. (2004) · Journal of Chemical Information and Computer Sciences · doi:10.1021/ci0498719 · Cited by 322
Consensus scoring criteria for improving enrichment in virtual screening.
Yang, J.-M., Chen, Y.-F., Shen, T.-W., Kristal, B. S., & Hsu, D. F. (2005) · Journal of Chemical Information and Modeling · doi:10.1021/ci050034w · Cited by 241
Machine learning dihydrogen activation in the chemical space surrounding Vaska's complex
Friederich, P., dos Passos Gomes, G., De Bin, R., Aspuru-Guzik, A., & Balcells, D. (2020) · Chemical Science · doi:10.1039/d0sc00445f · Cited by 179
Bender, A., Jenkins, J. L., Glick, M., Deng, Z., Nettles, J. H., & Davies, J. W. (2006) · Journal of Chemical Information and Modeling · doi:10.1021/ci600197y · Cited by 110
Geppert, H., Horváth, T., Gärtner, T., Wrobel, S., & Bajorath, J. (2008) · Journal of Chemical Information and Modeling · doi:10.1021/ci700461s · Cited by 63
Computational methods for prediction of in vitro effects of new chemical structures
Banerjee, P., Siramshetty, V. B., Drwal, M. N., & Preissner, R. (2016) · Journal of Cheminformatics · doi:10.1186/s13321-016-0162-2 · Cited by 60
Metadata
- Authors
- Hert, J., Willett, P., Wilton, D. J., Acklin, P., Azzaoui, K., Jacoby, E., & Schuffenhauer, A.
- Venue
- Journal of Chemical Information and Computer Sciences
- Publisher
- American Chemical Society (ACS)
- Published
- 2004-02-20
- Volume
- 44
- Issue
- 3
- Pages
- 1177-1185
- ISSN
- 0095-2338 (ISSN-L)
- OpenAlex
- W2000541041
- Cited by
- 310
- References
- 19
- FWCI
- 28.23
- Type
- journal article
- Language
- en
- Open access
- closed
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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