Principles of Protein−Protein Interactions: What are the Preferred Ways For Proteins To Interact?

Cited by (696)

Items 601–696 of 696

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7. DESIGN, SYNTHESIS AND BIOLOGICAL EVALUATION OF POTENTIAL STAT3 INHIBITORS AS ANTICANCER AGENTS
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10. Evolution-aware protein structure comparison and applications in protein-protein interaction prediction
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12. Protein-Protein Interactions Regulate Iron Homeostasis in Pseudomonas aeruginosa
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13. A Trigger Sequence in a Leucine Zipper Aids its Dimerization; Simulation Results
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14. STUDY OF SELF-ASSEMBLY AND STIMULI RESPONSIVE BEHAVIOR IN POLYMERIC AND DENDRITIC AMPHIPHILES
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18. Computational Methods Applicable to the Discovery of Small-Molecule Inhibitors of Protein-Protein Interactions
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19. Structure-Function Relationships in Hexacoordinate Heme Proteins: Mechanism of Cytoglobin Interactions with Exogenous Ligands
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20. Structural Investigation of Binding Events in Proteins
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21. Bisthioether Stapled Peptides Targeting Polycomb Repressive Complex 2 Gene Repression
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22. Elucidating the role of Mitoferrin (Mfrn), Iron Regulatory Proteins (IRP1 and IRP2) and Hephaestin (Heph) in iron metabolism by tagSNP and Protein-Protein Interaction (PPI) analysis
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23. Design et synthèse de macrocycles pseudopeptidiques pour le développement d'inhibiteurs d'interactions protéine-protéine
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24. Discovering meaning from biological sequences: focus on predicting misannotated proteins, binding patterns, and g4-quadruplex secondary structures
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25. An extension of Shannon’s entropy to explain taxa diversity and human diseases
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26. Discovery of amino acid compositions and motifs responsible for topological transitions in protein complexes
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27. Introduction
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29. Introduction
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31. 蛋白质复合物结构预测的集成分子对接方法
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32. Motion Restricted by Hydration Shell: A Self-Reporting System for Visualizing Electrolyte Interactions
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33. Protein–Protein‐Binding Interfaces
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34. Análise de interações proteicas via SAXS e simulações de Monte Carlo
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38. Gibbs Energy and Gene Expression Combined as a New Technique for Selecting Drug Targets for Inhibiting Specific Protein–Protein Interactions
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39. Water position sampling on protein structures based on a 3D distribution function using a weighted Monte Carlo method
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40. Sampling and Scoring in Protein–Protein Docking
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41. Differential pathogenetic mechanisms of mutations in helix 2 and helix 6 of rhodopsin
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42. Overview of Pharmacoproteomics and Its Clinical Applications
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43. Graph-based analysis of H-bond networks and unsupervised learning reveal conformational coupling in prion peptide segments
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44. In silico screening by AlphaFold2 program revealed the potential binding partners of nuage-localizing proteins and piRNA-related proteins
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46. In silico screening by AlphaFold2 program revealed the potential binding partners of nuage-localizing proteins and piRNA-related proteins
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47. How Digitalization and Algorithms Are Changing the Knowledge in Biomedicine
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48. GeoGAT-site: A Face-Centered Geometric Graph Attention Network for Protein-Protein Interface Prediction
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49. Hydrogen Bonding‐Assisted Deborylative Hydroxylation of Aryl Boronic Acids via Supramolecular Catalysis
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50. Area-Based Selection of Binding Interfaces for Structural Prediction of Protein–Protein Complexes
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51. MicroEnvPPI: Microenvironment-Aware Optimization Enables Generalizable Protein–Protein Interaction Prediction
    Kun Yang, Yi‐Fan Chen, Yanshi Wei, Mingrong Xiang, Linlin Zhuo, Xiangzheng Fu, Dongsheng Cao, Wenqian Zhang · 2025 · Journal of Chemical Information and Modeling
52. Protein–protein interactions: Interaction mechanism, binding forces, measuring, and overall features
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53. Amyloid β hypothesis in the development of therapeutic agents for Alzheimer's disease
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54. Computational investigation of the Plasmodium falciparum fatty acid biosynthetic pathway toward the discovery of novel antimalarials
    Francesco Colizzi · 2009 · AMS Dottorato Institutional Doctoral Theses Repository (University of Bologna)
55. Quantitative characterization of molecular motions using Rigid Body Transformation in molecular dynamics simulations
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57. A Lightweight Curriculum and Contrastive Learning Framework for Protein—Protein Interaction Prediction
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58. Reconnaissance de surfaces de protéines par des foldamères aromatiques
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61. Développement de méthodologies innovantes pour la caractérisation d’interfaces protéine-protéine et la conception d’inhibiteurs spécifiques : exploration de l’interface protéique de RhoA /ArhGEF1
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63. Pairwise and Multi-Component Protein-Protein Docking Using Exhaustive Branch-and-Bound Tri-Dimensional Rotational Searches
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87. BindingDB Entry 50047652: Structure-Based Identification of Novel Ligands Targeting Multiple Sites within a Chemokine-G-Protein-Coupled-Receptor Interface.
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88. BindingDB Entry 50044356: Hot spot-based design of small-molecule inhibitors for protein-protein interactions.
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89. BindingDB Entry 50014865: Dynamics-Based Discovery of Novel, Potent Benzoic Acid Derivatives as Orally Bioavailable Selective Estrogen Receptor Degraders for ERα+ Breast Cancer.
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90. BindingDB Entry 50018627: Evolution in non-peptide α-helix mimetics on the road to effective protein-protein interaction modulators.
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91. BindingDB Entry 50004757: Lipophilic Isosteres of a π-π Stacking Interaction: New Inhibitors of the Bcl-2-Bak Protein-Protein Interaction.
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92. BindingDB Entry 50023595: Identification of Novel Cyclobutane-Based Derivatives as Potent Acetyl-CoA Carboxylase Allosteric Inhibitors for Nonalcoholic Steatohepatitis Drug Discovery.
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93. FAIRsharing record for: PROtein-protein compleX MutAtion ThErmodynamics Database
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94. BindingDB Entry 7862: Small Molecules Engage Hot Spots through Cooperative Binding To Inhibit a Tight Protein-Protein Interaction.
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95. BindingDB Entry 50006154: Structure-Based Design and Synthesis of Potent Cyclic Peptides Inhibiting the YAP-TEAD Protein-Protein Interaction.
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96. BindingDB Entry 50047995: Discovery and Development of Kelch-like ECH-Associated Protein 1. Nuclear Factor Erythroid 2-Related Factor 2 (KEAP1:NRF2) Protein-Protein Interaction Inhibitors: Achievements, Challenges, and Future Directions.
    BindingDB · 2018 · UC San Diego