Nucleosome structure and function
Open accessAbstract
ADVERTISEMENT RETURN TO ISSUEPREVReviewNEXTNucleosome Structure and FunctionRobert K. McGinty and Song Tan*View Author Information Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, United States*E-mail: [email protected]Cite this: Chem. Rev. 2015, 115, 6, 2255–2273Publication Date (Web):December 12, 2014Publication History Received11 July 2014Published online12 December 2014Published inissue 25 March 2015https://doi.org/10.1021/cr500373hCopyright © 2014 American Chemical SocietyRIGHTS & PERMISSIONSACS AuthorChoiceArticle Views43138Altmetric-Citations276LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (20 MB) Get e-AlertsSUBJECTS:Crystal structure,Fibers,Genetics,Nuclear structure,Peptides and proteins Get e-Alerts
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Nucleosomes are unstable, and their structure changes rapidly in response to external stimuli, leading to permanent changes in chromosome organization, exhibiting heterochromatin and euchromatin domains.
“Nucleosomes are unstable, and their structure changes rapidly in response to external stimuli, leading to permanent changes in the organization of chromosomes, thus exhibiting different domains, such as heterochromatin and euchromatin, that are defined by their degree of compaction and are associated with gene functionality [57].”
From Revisiting Epigenetics Fundamentals and Its Biomedical Implications (2024) · cites this paper as [57]
The Introduction describes nucleosomes as units of chromatin compaction and says histone modifications can tune nucleosome stability and higher-order compaction. It also links coordinated accessibility to transcriptional activity and repression. It does not say nucleosomes are generally unstable or that external stimuli rapidly change their structure and cause permanent chromosome reorganization; the cited passages do not define heterochromatin and euchromatin domains. (LLM, conf=0.88)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Carriere, V., Roussel, L., Ortega, N., Lacorre, D.-A., Americh, L., Aguilar, L., Bouche, G., & Girard, J.-P. (2007) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0606854104 · Cited by 966 · see citing works
The RanGTP gradient—a GPS for the mitotic spindle
Kalab, P., & Heald, R. (2008) · Journal of Cell Science · doi:10.1242/jcs.005959 · Cited by 293 · see citing works
Flagged first, then by citations
Research works printed but not linked: 163
- McGhee J. D.; Felsenfeld G. Annu. Rev. Biochem. 1980, 49, 1115. 6996562
- Simpson R. T. Biochemistry 1978, 17, 5524. 728412
- Taverna S. D.; Li H.; Ruthenburg A. J.; Allis C. D.; Patel D. J. Nat. Struct. Mol. Biol. 2007, 14, 1025. 17984965 PMC4691843
- Luger K.; Dechassa M. L.; Tremethick D. J. Nat. Rev. Mol. Cell Biol. 2012, 13, 436. 22722606 PMC3408961
- Shogren-Knaak M.; Ishii H.; Sun J.-M.; Pazin M. J.; Davie J. R.; Peterson C. L. Science 2006, 311, 844. 16469925
- Lu X.; Simon M. D.; Chodaparambil J. V.; Hansen J. C.; Shokat K. M.; Luger K. Nat. Struct. Mol. Biol. 2008, 15, 1122. 18794842 PMC2648974
- Fierz B.; Chatterjee C.; McGinty R. K.; Bar-Dagan M.; Raleigh D. P.; Muir T. W. Nat. Chem. Biol. 2011, 7, 113. 21196936 PMC3078768
- Robinson P. J.; Rhodes D. Curr. Opin. Struct. Biol. 2006, 16, 336. 16714106
- Luger K.; Mäder A. W.; Richmond R. K.; Sargent D. F.; Richmond T. J. Nature 1997, 389, 251. 9305837
- Lowary P. T.; Widom J. J. Mol. Biol. 1998, 276, 19. 9514715
- Song F.; Chen P.; Sun D.; Wang M.; Dong L.; Liang D.; Xu R.-M.; Zhu P.; Li G. Science 2014, 344, 376. 24763583
- Robinson P. J. J.; Fairall L.; Huynh V. A. T.; Rhodes D. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 6506. 16617109 PMC1436021
- Schalch T.; Duda S.; Sargent D. F.; Richmond T. J. Nature 2005, 436, 138. 16001076
- Flaus A.; Luger K.; Tan S.; Richmond T. J. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 1370. 8643638 PMC39944
- Arents G.; Burlingame R. W.; Wang B. C.; Love W. E.; Moudrianakis E. N. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 10148. 1946434 PMC52885
- Arents G.; Moudrianakis E. N. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 11170. 7479959 PMC40593
- Davey C. A.; Sargent D. F.; Luger K.; Maeder A. W.; Richmond T. J. J. Mol. Biol. 2002, 319, 1097. 12079350
- McGinty R. K.; Tan S. In Fundamentals of Chromatin; Springer: New York: New York, NY, 2013; pp 1– 28.
- Preez du L. L.; Patterton H.-G. Subcell. Biochem. 2013, 61, 37. 23150245
- Zheng C.; Hayes J. J. J. Biol. Chem. 2003, 278, 24217. 12697747
- Kan P. Y.; Lu X.; Hansen J. C.; Hayes J. J. Mol. Cell. Biol. 2007, 27, 2084. 17242202 PMC1820515
- Kan P. Y.; Caterino T. L.; Hayes J. J. Mol. Cell. Biol. 2009, 29, 538. 19001093 PMC2612503
- White C. L.; Suto R. K.; Luger K. EMBO J. 2001, 20, 5207. 11566884 PMC125637
- Clapier C. R.; Chakravarthy S.; Petosa C.; Fernández-Tornero C.; Luger K.; Müller C. W. Proteins 2008, 71, 1. 17957772 PMC2443955
- Tsunaka Y.; Kajimura N.; Tate S.-I.; Morikawa K. Nucleic Acids Res. 2005, 33, 3424. 15951514 PMC1150222
- Sugiyama M.; Arimura Y.; Shirayama K.; Fujita R.; Oba Y.; Sato N.; Inoue R.; Oda T.; Sato M.; Heenan R. K.; Kurumizaka H. Biophys. J. 2014, 106, 2206. 24853749 PMC4052288
- Urahama T.; Horikoshi N.; Osakabe A.; Tachiwana H.; Kurumizaka H. Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun. 2014, 70, 444. PMC3976059 24699735
- Tachiwana H.; Kagawa W.; Shiga T.; Osakabe A.; Miya Y.; Saito K.; Hayashi-Takanaka Y.; Oda T.; Sato M.; Park S.-Y.; Kimura H.; Kurumizaka H. Nature 2011, 476, 232. 21743476
- Tachiwana H.; Osakabe A.; Shiga T.; Miya Y.; Kimura H.; Kagawa W.; Kurumizaka H. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2011, 67, 578. 21636898
- Tachiwana H.; Kagawa W.; Osakabe A.; Kawaguchi K.; Shiga T.; Hayashi-Takanaka Y.; Kimura H.; Kurumizaka H. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 10454. 20498094 PMC2890842
- Arimura Y.; Kimura H.; Oda T.; Sato K.; Osakabe A.; Tachiwana H.; Sato Y.; Kinugasa Y.; Ikura T.; Sugiyama M.; Sato M.; Kurumizaka H. Sci. Rep. 2013, 3, 3510. 24336483 PMC3863819
- Chakravarthy S.; Bao Y.; Roberts V. A.; Tremethick D.; Luger K. Cold Spring Harbor Symp. Quant. Biol. 2004, 69, 227. 16117653
- Chakravarthy S.; Gundimella S. K. Y.; Caron C.; Perche P.-Y.; Pehrson J. R.; Khochbin S.; Luger K. Mol. Cell. Biol. 2005, 25, 7616. 16107708 PMC1190287
- Chakravarthy S.; Luger K. J. Biol. Chem. 2006, 281, 25522. 16803903
- Abbott D. W.; Laszczak M.; Lewis J. D.; Su H.; Moore S. C.; Hills M.; Dimitrov S.; Ausio J. Biochemistry 2004, 43, 1352. 14756572
- Eirín-López J. M.; Ishibashi T.; Ausio J. FASEB J. 2008, 22, 316. 17726088
- Horikoshi N.; Sato K.; Shimada K.; Arimura Y.; Osakabe A.; Tachiwana H.; Hayashi-Takanaka Y.; Iwasaki W.; Kagawa W.; Harata M.; Kimura H.; Kurumizaka H. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2013, 69, 2431. 24311584 PMC3852653
- Suto R. K.; Clarkson M. J.; Tremethick D. J.; Luger K. Nat. Struct. Biol. 2000, 7, 1121. 11101893
- Dechassa M. L.; Wyns K.; Li M.; Hall M. A.; Wang M. D.; Luger K. Nat. Commun. 2011, 2, 313. 21587230 PMC3112535
- Conde e Silva N.; Black B. E.; Sivolob A.; Filipski J.; Cleveland D. W.; Prunell A. J. Mol. Biol. 2007, 370, 555. 17524417
- Sekulic N.; Bassett E. A.; Rogers D. J.; Black B. E. Nature 2010, 467, 347. 20739937 PMC2946842
- Kingston I. J.; Yung J. S. Y.; Singleton M. R. J. Biol. Chem. 2011, 286, 4021. 21115484 PMC3030402
- Panchenko T.; Sorensen T. C.; Woodcock C. L.; Kan Z.-Y.; Wood S.; Resch M. G.; Luger K.; Englander S. W.; Hansen J. C.; Black B. E. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 16588. 21949362 PMC3189058
- Doyen C.-M.; Montel F.; Gautier T.; Menoni H.; Claudet C.; Delacour-Larose M.; Angelov D.; Hamiche A.; Bednar J.; Faivre-Moskalenko C.; Bouvet P.; Dimitrov S. EMBO J. 2006, 25, 4234. 16957777 PMC1570437
- Cosgrove M. S.; Wolberger C. Biochem. Cell Biol. 2005, 83, 468. 16094450
- Cosgrove M. S.; Boeke J. D.; Wolberger C. Nat. Struct. Mol. Biol. 2004, 11, 1037. 15523479
- Mersfelder E. L.; Parthun M. R. Nucleic Acids Res. 2006, 34, 2653. 16714444 PMC1464108
- North J. A.; Šimon M.; Ferdinand M. B.; Shoffner M. A.; Picking J. W.; Howard C. J.; Mooney A. M.; van Noort J.; Poirier M. G.; Ottesen J. J. Nucleic Acids Res. 2014, 42, 4922. 24561803 PMC4005658
- North J. A.; Javaid S.; Ferdinand M. B.; Chatterjee N.; Picking J. W.; Shoffner M.; Nakkula R. J.; Bartholomew B.; Ottesen J. J.; Fishel R.; Poirier M. G. Nucleic Acids Res. 2011, 39, 6465. 21576235 PMC3159469
- Manohar M.; Mooney A. M.; North J. A.; Nakkula R. J.; Picking J. W.; Edon A.; Fishel R.; Poirier M. G.; Ottesen J. J. J. Biol. Chem. 2009, 284, 23312. 19520870 PMC2749105
- Šimon M.; North J. A.; Shimko J. C.; Forties R. A.; Ferdinand M. B.; Manohar M.; Zhang M.; Fishel R.; Ottesen J. J.; Poirier M. G. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12711. 21768347 PMC3150920
- Makde R. D.; England J. R.; Yennawar H. P.; Tan S. Nature 2010, 467, 562. 20739938 PMC3168546
- Vasudevan D.; Chua E. Y. D.; Davey C. A. J. Mol. Biol. 2010, 403, 1. 20800598
- Finch J. T.; Brown R. S.; Richmond T.; Rushton B.; Lutter L. C.; Klug A. J. Mol. Biol. 1981, 145, 757. 7265219
- Richmond T. J.; Finch J. T.; Rushton B.; Rhodes D.; Klug A. Nature 1984, 311, 532. 6482966
- Richmond T. J.; Finch J. T.; Klug A. Cold Spring Harbor Symp. Quant. Biol. 1983, 47, 493. 6574855
- Richmond T. J.; Searles M. A.; Simpson R. T. J. Mol. Biol. 1988, 199, 161. 3351917
- Simpson R. T.; Stafford D. W. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 51. 6572008 PMC393307
- Harp J. M.; Palmer E. L.; York M. H.; Gewiess A.; Davis M.; Bunick G. J. Electrophoresis 1995, 16, 1861. 8586054
- Satchwell S. C.; Drew H. R.; Travers A. A. J. Mol. Biol. 1986, 191, 659. 3806678
- Chua E. Y. D.; Vasudevan D.; Davey G. E.; Wu B.; Davey C. A. Nucleic Acids Res. 2012, 40, 6338. 22453276 PMC3401446
- Kulaeva O. I.; Gaykalova D. A.; Pestov N. A.; Golovastov V. V.; Vassylyev D. G.; Artsimovitch I.; Studitsky V. M. Nat. Struct. Mol. Biol. 2009, 16, 1272. 19935686 PMC2919570
- Cui F.; Zhurkin V. B. J. Biomol. Struct. Dyn. 2010, 27, 821. 20232936 PMC2993692
- Tolstorukov M. Y.; Colasanti A. V.; McCandlish D. M.; Olson W. K.; Zhurkin V. B. J. Mol. Biol. 2007, 371, 725. 17585938 PMC2000845
- Travers A. A. Philos. Trans. R. Soc., A 2004, 362, 1423. 15306459
- Travers A. A.; Muskhelishvili G.; Thompson J. M. T. Philos. Trans. R. Soc., A 2012, 370, 2960. 22615471
- Olson W. K.; Zhurkin V. B. Curr. Opin. Struct. Biol. 2011, 21, 348. 21482100 PMC3112303
- Richmond T. J.; Davey C. A. Nature 2003, 423, 145. 12736678
- Juo Z. S.; Chiu T. K.; Leiberman P. M.; Baikalov I.; Berk A. J.; Dickerson R. E. J. Mol. Biol. 1996, 261, 239. 8757291
- Kim Y.; Geiger J. H.; Hahn S.; Sigler P. B. Nature 1993, 365, 512. 8413604
- Kim J. L.; Nikolov D. B.; Burley S. K. Nature 1993, 365, 520. 8413605
- Olson W. K.; Gorin A. A.; Lu X.-J.; Hock L. M.; Zhurkin V. B. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 11163. 9736707 PMC21613
- Bondarenko V. A.; Steele L. M.; Ujvári A.; Gaykalova D. A.; Kulaeva O. I.; Polikanov Y. S.; Luse D. S.; Studitsky V. M. Mol. Cell 2006, 24, 469. 17081995
- Makde R. D.; Tan S. Anal. Biochem. 2013, 442, 138. 23928047 PMC3799870
- Hock R.; Furusawa T.; Ueda T.; Bustin M. Trends Cell Biol. 2007, 17, 72. 17169561 PMC2442274
- Canzio D.; Liao M.; Naber N.; Pate E.; Larson A.; Wu S.; Marina D. B.; Garcia J. F.; Madhani H. D.; Cooke R.; Schuck P.; Cheng Y.; Narlikar G. J. Nature 2013, 496, 377. 23485968 PMC3907283
- Armache K. J.; Garlick J. D.; Canzio D.; Narlikar G. J.; Kingston R. E. Science 2011, 334, 977. 22096199 PMC4098850
- Barbera A. J.; Chodaparambil J. V.; Kelley-Clarke B.; Joukov V.; Walter J. C.; Luger K.; Kaye K. M. Science 2006, 311, 856. 16469929
- Marmorstein R.; Trievel R. C. Biochim. Biophys. Acta, Gene Regul. Mech. 2009, 1789, 58. PMC4059211 18722564
- Musselman C. A.; Lalonde M.-E.; Côté J.; Kutateladze T. G. Nat. Struct. Mol. Biol. 2012, 19, 1218. 23211769 PMC3645987
- Ruthenburg A. J.; Li H.; Patel D. J.; Allis C. D. Nat. Rev. Mol. Cell Biol. 2007, 8, 983. 18037899 PMC4690530
- Zhou B.-R.; Feng H.; Ghirlando R.; Kato H.; Gruschus J.; Bai Y. J. Mol. Biol. 2012, 421, 30. 22575889 PMC3392517
- Dorigo B.; Schalch T.; Bystricky K.; Richmond T. J. J. Mol. Biol. 2003, 327, 85. 12614610
- Robinson P. J. J.; An W.; Routh A.; Martino F.; Chapman L.; Roeder R. G.; Rhodes D. J. Mol. Biol. 2008, 381, 816. 18653199 PMC3870898
- Allahverdi A.; Yang R.; Korolev N.; Fan Y.; Davey C. A.; Liu C. F.; Nordenskiold L. Nucleic Acids Res. 2011, 39, 1680. 21047799 PMC3061077
- Dorigo B.; Schalch T.; Kulangara A.; Duda S.; Schroeder R. R.; Richmond T. J. Science 2004, 306, 1571. 15567867
- Sinha D.; Shogren-Knaak M. A. J. Biol. Chem. 2010, 285, 16572. 20351095 PMC2878085
- Yang D.; Arya G. Phys. Chem. Chem. Phys. 2011, 13, 2911. 21157623
- Barbera A. J.; Ballestas M. E.; Kaye K. M. J. Virol. 2004, 78, 294. 14671111 PMC303411
- Clarke P. R.; Zhang C. Nat. Rev. Mol. Cell Biol. 2008, 9, 464. 18478030
- Carazo-Salas R. E.; Guarguaglini G.; Gruss O. J.; Segref A.; Karsenti E.; Mattaj I. W. Nature 1999, 400, 178. 10408446
- Kalab P.; Heald R. J. Cell Sci. 2008, 121, 1577. 18469014 PMC7185306
- Nemergut M. E.; Mizzen C. A.; Stukenberg T.; Allis C. D.; Macara I. G. Science 2001, 292, 1540. 11375490
- England J. R.; Huang J.; Jennings M. J.; Makde R. D.; Tan S. J. Mol. Biol. 2010, 398, 518. 20347844 PMC2895563
- Rusche L. N.; Kirchmaier A. L.; Rine J. Annu. Rev. Biochem. 2003, 72, 481. 12676793
- McBryant S. J.; Krause C.; Woodcock C. L.; Hansen J. C. Mol. Cell. Biol. 2008, 28, 3563. 18362167 PMC2423291
- Johnson A.; Li G.; Sikorski T. W.; Buratowski S.; Woodcock C. L.; Moazed D. Mol. Cell 2009, 35, 769. 19782027 PMC2842978
- Martino F.; Kueng S.; Robinson P.; Tsai-Pflugfelder M.; van Leeuwen F.; Ziegler M.; Cubizolles F.; Cockell M. M.; Rhodes D.; Gasser S. M. Mol. Cell 2009, 33, 323. 19217406
- Norris A.; Bianchet M. A.; Boeke J. D. PLoS Genet. 2008, 4, e1000301. 19079580 PMC2587916
- Singer M. S.; Kahana A.; Wolf A. J.; Meisinger L. L.; Peterson S. E.; Goggin C.; Mahowald M.; Gottschling D. E. Genetics 1998, 150, 613. 9755194 PMC1460361
- Ng H. H.; Ciccone D. N.; Morshead K. B.; Oettinger M. A.; Struhl K. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 1820. 12574507 PMC149917
- van Leeuwen F.; Gafken P. R.; Gottschling D. E. Cell 2002, 109, 745. 12086673
- Arnaudo N.; Fernández I. S.; McLaughlin S. H.; Peak-Chew S. Y.; Rhodes D.; Martino F. Nat. Struct. Mol. Biol. 2013, 20, 1119. 23934150 PMC3818696
- Yang D.; Fang Q.; Wang M.; Ren R.; Wang H.; He M.; Sun Y.; Yang N.; Xu R.-M. Nat. Struct. Mol. Biol. 2013, 20, 1116. 23934152
- Connelly J. J.; Yuan P.; Hsu H.-C.; Li Z.; Xu R.-M.; Sternglanz R. Mol. Cell. Biol. 2006, 26, 3256. 16581798 PMC1446965
- Kato H.; Jiang J.; Zhou B.-R.; Rozendaal M.; Feng H.; Ghirlando R.; Xiao T. S.; Straight A. F.; Bai Y. Science 2013, 340, 1110. 23723239 PMC3763809
- Henikoff S.; Ahmad K.; Malik H. S. Science 2001, 293, 1098. 11498581
- Verdaasdonk J. S.; Bloom K. Nat. Rev. Mol. Cell Biol. 2011, 12, 320. 21508988 PMC3288958
- Hori T.; Amano M.; Suzuki A.; Backer C. B.; Welburn J. P.; Dong Y.; McEwen B. F.; Shang W.-H.; Suzuki E.; Okawa K.; Cheeseman I. M.; Fukagawa T. Cell 2008, 135, 1039. 19070575
- McGinty R. K.; Henrici R. C.; Tan S. Nature 2014, 514, 591. 25355358 PMC4215650
- Cao R.; Tsukada Y.-I.; Zhang Y. Mol. Cell 2005, 20, 845. 16359901
- Grau D. J.; Chapman B. A.; Garlick J. D.; Borowsky M.; Francis N. J.; Kingston R. E. Genes Dev. 2011, 25, 2210. 22012622 PMC3205590
- Simon J. A.; Kingston R. E. Nat. Rev. Mol. Cell Biol. 2009, 10, 697. 19738629
- Buchwald G.; van der Stoop P.; Weichenrieder O.; Perrakis A.; van Lohuizen M.; Sixma T. K. EMBO J. 2006, 25, 2465. 16710298 PMC1478191
- Bentley M. L.; Corn J. E.; Dong K. C.; Phung Q.; Cheung T. K.; Cochran A. G. EMBO J. 2011, 30, 3285. 21772249 PMC3160663
- Leung J. W.; Agarwal P.; Canny M. D.; Gong F.; Robison A. D.; Finkelstein I. J.; Durocher D.; Miller K. M. PLoS Genet. 2014, 10, e1004178. 24603765 PMC3945288
- Kato H.; van Ingen H.; Zhou B.-R.; Feng H.; Bustin M.; Kay L. E.; Bai Y. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12283. 21730181 PMC3145696
- Zhou B.-R.; Feng H.; Kato H.; Dai L.; Yang Y.; Zhou Y.; Bai Y. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 19390. 24218562 PMC3845106
- Rattner B. P.; Yusufzai T.; Kadonaga J. T. Mol. Cell 2009, 34, 620. 19524541 PMC2709789
- Lim J.-H.; West K. L.; Rubinstein Y.; Bergel M.; Postnikov Y. V.; Bustin M. EMBO J. 2005, 24, 3038. 16096646 PMC1201349
- Lim J.-H.; Catez F.; Birger Y.; West K. L.; Prymakowska-Bosak M.; Postnikov Y. V.; Bustin M. Mol. Cell 2004, 15, 573. 15327773
- Postnikov Y.; Bustin M. Biochim. Biophys. Acta, Gene Regul. Mech. 2010, 1799, 62. PMC2818575 19948260
- Prymakowska-Bosak M.; Misteli T.; Herrera J. E.; Shirakawa H.; Birger Y.; Garfield S.; Bustin M. Mol. Cell. Biol. 2001, 21, 5169. 11438671 PMC87241
- Mattiroli F.; Uckelmann M.; Sahtoe D. D.; van Dijk W. J.; Sixma T. K. Nat. Commun. 2014, 5, 3291. 24518117 PMC3929782
- Carriere V.; Roussel L.; Ortega N.; Lacorre D.-A.; Americh L.; Aguilar L.; Bouche G.; Girard J.-P. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 282. 17185418 PMC1765450
- Kalashnikova A. A.; Porter-Goff M. E.; Muthurajan U. M.; Luger K.; Hansen J. C. J. R. Soc., Interface 2013, 10, 20121022. 23446052 PMC3627075
- Clapier C. R.; Cairns B. R. Annu. Rev. Biochem. 2009, 78, 273. 19355820
- Chaban Y.; Ezeokonkwo C.; Chung W.-H.; Zhang F.; Kornberg R. D.; Maier-Davis B.; Lorch Y.; Asturias F. J. Nat. Struct. Mol. Biol. 2008, 15, 1272. 19029894 PMC2659406
- Asturias F. J.; Chung W.-H.; Kornberg R. D.; Lorch Y. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 13477. 12368485 PMC129698
- Saha A.; Wittmeyer J.; Cairns B. R. Nat. Struct. Mol. Biol. 2005, 12, 747. 16086025
- Leschziner A. E.; Saha A.; Wittmeyer J.; Zhang Y.; Bustamante C.; Cairns B. R.; Nogales E. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 4913. 17360331 PMC1820885
- Racki L. R.; Yang J. G.; Naber N.; Partensky P. D.; Acevedo A.; Purcell T. J.; Cooke R.; Cheng Y.; Narlikar G. J. Nature 2009, 462, 1016. 20033039 PMC2869534
- Yamada K.; Frouws T. D.; Angst B.; Fitzgerald D. J.; DeLuca C.; Schimmele K.; Sargent D. F.; Richmond T. J. Nature 2011, 472, 448. 21525927
- Saravanan M.; Wuerges J.; Bose D.; McCormack E. A.; Cook N. J.; Zhang X.; Wigley D. B. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 20883. 23213201 PMC3529010
- Tosi A.; Haas C.; Herzog F.; Gilmozzi A.; Berninghausen O.; Ungewickell C.; Gerhold C. B.; Lakomek K.; Aebersold R.; Beckmann R.; Hopfner K.-P. Cell 2013, 154, 1207. 24034245
- Chittuluru J. R.; Chaban Y.; Monnet-Saksouk J.; Carrozza M. J.; Sapountzi V.; Selleck W.; Huang J.; Utley R. T.; Cramet M.; Allard S.; Cai G.; Workman J. L.; Fried M. G.; Tan S.; Côté J.; Asturias F. J. Nat. Struct. Mol. Biol. 2011, 18, 1196. 21984211 PMC3210417
- Boudreault A. A.; Cronier D.; Selleck W.; Lacoste N.; Utley R. T.; Allard S.; Savard J.; Lane W. S.; Tan S.; Côté J. Genes Dev. 2003, 17, 1415. 12782659 PMC196073
- Huang J.; Tan S. Mol. Cell. Biol. 2013, 33, 159. 23109429 PMC3536312
- Harshman S. W.; Young N. L.; Parthun M. R.; Freitas M. A. Nucleic Acids Res. 2013, 41, 9593. 23945933 PMC3834806
- Allan J.; Hartman P. G.; Crane-Robinson C.; Aviles F. X. Nature 1980, 288, 675. 7453800
- Syed S. H.; Goutte-Gattat D.; Becker N.; Meyer S.; Shukla M. S.; Hayes J. J.; Everaers R.; Angelov D.; Bednar J.; Dimitrov S. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 9620. 20457934 PMC2906896
- Fan L.; Roberts V. A. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 8384. 16717183 PMC1482502
- Meyer S.; Becker N. B.; Syed S. H.; Goutte-Gattat D.; Shukla M. S.; Hayes J. J.; Angelov D.; Bednar J.; Dimitrov S.; Everaers R. Nucleic Acids Res. 2011, 39, 9139. 21835779 PMC3241633
- Zhou Y. B.; Gerchman S. E.; Ramakrishnan V.; Travers A.; Muyldermans S. Nature 1998, 395, 402. 9759733
- Bharath M. M. S.; Chandra N. R.; Rao M. R. S. Nucleic Acids Res. 2003, 31, 4264. 12853645 PMC167642
- Wong J.; Li Q.; Levi B. Z.; Shi Y. B.; Wolffe A. P. EMBO J. 1997, 16, 7130. 9384590 PMC1170314
- Pachov G. V.; Gabdoulline R. R.; Wade R. C. Nucleic Acids Res. 2011, 39, 5255. 21355036 PMC3130272
- An W.; Leuba S. H.; van Holde K.; Zlatanova J. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 3396. 9520377 PMC19847
- Vogler C.; Huber C.; Waldmann T.; Ettig R.; Braun L.; Izzo A.; Daujat S.; Chassignet I.; Lopez-Contreras A. J.; Fernandez-Capetillo O.; Dundr M.; Rippe K.; Längst G.; Schneider R. PLoS Genet. 2010, 6, e1001234. 21170357 PMC3000355
- Thakar A.; Gupta P.; Ishibashi T.; Finn R.; Silva-Moreno B.; Uchiyama S.; Fukui K.; Tomschik M.; Ausio J.; Zlatanova J. Biochemistry 2009, 48, 10852. 19856965
- McGhee J. D.; Nickol J. M.; Felsenfeld G.; Rau D. C. Cell 1983, 33, 831. 6871995
- Widom J.; Klug A. Cell 1985, 43, 207. 4075395
- Thoma F.; Koller T.; Klug A. J. Cell Biol. 2003, 83, 403. 387806 PMC2111545
- Worcel A.; Strogatz S.; Riley D. Proc. Natl. Acad. Sci. U.S.A. 1981, 78, 1461. 6940168 PMC319150
- Woodcock C. L.; Frado L. L.; Rattner J. B. J. Cell Biol. 2002, 99, 42. 6736132 PMC2275637
- Williams S. P.; Athey B. D.; Muglia L. J.; Schappe R. S.; Gough A. H.; Langmore J. P. Biophys. J. 1986, 49, 233. 3955173 PMC1329627
- Wong H.; Victor J.-M.; Mozziconacci J. PLoS One 2007, 2, e877. 17849006 PMC1963316
- Eltsov M.; MacLellan K. M.; Maeshima K.; Frangakis A. S.; Dubochet J. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 19732. 19064912 PMC2604964
- Maeshima K.; Hihara S.; Eltsov M. Curr. Opin. Cell Biol. 2010, 22, 291. 20346642
- Joti Y.; Hikima T.; Nishino Y.; Kamada F.; Hihara S.; Takata H.; Ishikawa T.; Maeshima K. Nucleus 2012, 3, 404. 22825571 PMC3474659
- Nishino Y.; Eltsov M.; Joti Y.; Ito K.; Takata H.; Takahashi Y.; Hihara S.; Frangakis A. S.; Imamoto N.; Ishikawa T.; Maeshima K. EMBO J. 2012, 31, 1644. 22343941 PMC3321210
- Hansen J. C. EMBO J. 2012, 31, 1621. 22415369 PMC3321215
- Baker N. A.; Sept D.; Joseph S.; Holst M. J.; McCammon J. A. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 10037. 11517324 PMC56910
Cited by
Sorted by citations
Biological embedding of experience: a primer on epigenetics
Aristizabal, M. J., Anreiter, I., Halldorsdottir, T., Odgers, C. L., McDade, T. W., Goldenberg, A., Mostafavi, S., Kobor, M. S., Binder, E. B., Sokolowski, M. B., et al. (2020) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1820838116 · Cited by 268 · see citing works
Extracellular Matrix Cues Regulate Mechanosensing and Mechanotransduction of Cancer Cells
Mierke, C. T. (2024) · Cells · doi:10.3390/cells13010096 · Cited by 146 · see citing works
Pich, O., Muiños, F., Sabarinathan, R., Reyes-Salazar, I., Gonzalez-Perez, A., & Lopez-Bigas, N. (2018) · Cell · doi:10.1016/j.cell.2018.10.004 · Cited by 123 · see citing works
Binding without folding – the biomolecular function of disordered polyelectrolyte complexes
Schuler, B., Borgia, A., Borgia, M. B., Heidarsson, P. O., Holmstrom, E. D., Nettels, D., & Sottini, A. (2020) · Current Opinion in Structural Biology · doi:10.1016/j.sbi.2019.12.006 · Cited by 91 · see citing works
Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer
Wilson, M. D., Renault, L., Maskell, D. P., Ghoneim, M., Pye, V. E., Nans, A., Rueda, D. S., Cherepanov, P., & Costa, A. (2019) · Nature Communications · doi:10.1038/s41467-019-12007-w · Cited by 42 · see citing works
Zhou, M., Malhan, N., Ahkami, A. H., Engbrecht, K., Myers, G., Dahlberg, J., Hollingsworth, J., Sievert, J. A., Hutmacher, R., Madera, M., et al. (2020) · Methods · doi:10.1016/j.ymeth.2019.10.007 · Cited by 23 · see citing works
Revisiting Epigenetics Fundamentals and Its Biomedical Implications
Meza-Menchaca, T., Albores-Medina, A., Heredia-Mendez, A. J., Ruíz-May, E., Ricaño-Rodríguez, J., Gallegos-García, V., Esquivel, A., Vettoretti-Maldonado, G., & Campos-Parra, A. D. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25147927 · Cited by 15 · see citing works
- Authors
- McGinty, R. K., & Tan, S.
- Affiliations
- Pennsylvania State University (US)
- Corresponding author
- Tan, Song
- Venue
- Chemical Reviews
- Publisher
- American Chemical Society (ACS)
- Published
- 2014-12-12
- Volume
- 115
- Issue
- 6
- Pages
- 2255-2273
- ISSN
- 0009-2665 (ISSN-L)
- 1520-6890
- PMC
- PMC4378457
- OpenAlex
- W2077319657
- Cited by
- 530
- References
- 2
- Citations by year
- 2026: 46 · 2025: 50 · 2024: 60 · 2023: 39 · 2022: 60 · 2021: 55 · 2020: 63 · 2019: 59 · 2018: 40 · 2017: 23 · 2016: 30 · 2015: 4
- FWCI
- 1.79
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Locations
- Chemical Reviews (publishedVersion, other-oa)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Institute of General Medical Sciences (GM060489-09S1, GM088236, GM111651)
- Damon Runyon Cancer Research Foundation (DRG-2107-12)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
- Keywords
- nucleosome, nucleosome structure, DNA packaging, histone-DNA interactions, chromatin, eukaryotic gene regulation
- MeSH terms
- Humans, Models, Molecular, Nucleosomes
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review