Cited by 530Genomics and Chromatin DynamicsNuclear Structure and FunctionChromatin Remodeling and Cancer

Nucleosome structure and function

Open access
McGinty, Robert K., Tan, Song·2015·Chemical Reviews

Abstract

ADVERTISEMENT RETURN TO ISSUEPREVReviewNEXTNucleosome Structure and FunctionRobert K. McGinty and Song Tan*View Author Information Center for Eukaryotic Gene Regulation, Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, United States*E-mail: [email protected]Cite this: Chem. Rev. 2015, 115, 6, 2255–2273Publication Date (Web):December 12, 2014Publication History Received11 July 2014Published online12 December 2014Published inissue 25 March 2015https://doi.org/10.1021/cr500373hCopyright © 2014 American Chemical SocietyRIGHTS & PERMISSIONSACS AuthorChoiceArticle Views43138Altmetric-Citations276LEARN ABOUT THESE METRICSArticle Views are the COUNTER-compliant sum of full text article downloads since November 2008 (both PDF and HTML) across all institutions and individuals. These metrics are regularly updated to reflect usage leading up to the last few days.Citations are the number of other articles citing this article, calculated by Crossref and updated daily. Find more information about Crossref citation counts.The Altmetric Attention Score is a quantitative measure of the attention that a research article has received online. Clicking on the donut icon will load a page at altmetric.com with additional details about the score and the social media presence for the given article. Find more information on the Altmetric Attention Score and how the score is calculated. Share Add toView InAdd Full Text with ReferenceAdd Description ExportRISCitationCitation and abstractCitation and referencesMore Options Share onFacebookTwitterWechatLinked InReddit PDF (20 MB) Get e-AlertsSUBJECTS:Crystal structure,Fibers,Genetics,Nuclear structure,Peptides and proteins Get e-Alerts

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1021/cr500373h

Cites

2 of 2 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Nucleosomes are unstable, and their structure changes rapidly in response to external stimuli, leading to permanent changes in chromosome organization, exhibiting heterochromatin and euchromatin domains.

    “Nucleosomes are unstable, and their structure changes rapidly in response to external stimuli, leading to permanent changes in the organization of chromosomes, thus exhibiting different domains, such as heterochromatin and euchromatin, that are defined by their degree of compaction and are associated with gene functionality [57].”

    From Revisiting Epigenetics Fundamentals and Its Biomedical Implications (2024) · cites this paper as [57]

    The Introduction describes nucleosomes as units of chromatin compaction and says histone modifications can tune nucleosome stability and higher-order compaction. It also links coordinated accessibility to transcriptional activity and repression. It does not say nucleosomes are generally unstable or that external stimuli rapidly change their structure and cause permanent chromosome reorganization; the cited passages do not define heterochromatin and euchromatin domains. (LLM, conf=0.88)

    Experimental — accuracy not yet measured

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 163

  1. McGhee J. D.; Felsenfeld G. Annu. Rev. Biochem. 1980, 49, 1115. 6996562
  2. Simpson R. T. Biochemistry 1978, 17, 5524. 728412
  3. Taverna S. D.; Li H.; Ruthenburg A. J.; Allis C. D.; Patel D. J. Nat. Struct. Mol. Biol. 2007, 14, 1025. 17984965 PMC4691843
  4. Luger K.; Dechassa M. L.; Tremethick D. J. Nat. Rev. Mol. Cell Biol. 2012, 13, 436. 22722606 PMC3408961
  5. Shogren-Knaak M.; Ishii H.; Sun J.-M.; Pazin M. J.; Davie J. R.; Peterson C. L. Science 2006, 311, 844. 16469925
  6. Lu X.; Simon M. D.; Chodaparambil J. V.; Hansen J. C.; Shokat K. M.; Luger K. Nat. Struct. Mol. Biol. 2008, 15, 1122. 18794842 PMC2648974
  7. Fierz B.; Chatterjee C.; McGinty R. K.; Bar-Dagan M.; Raleigh D. P.; Muir T. W. Nat. Chem. Biol. 2011, 7, 113. 21196936 PMC3078768
  8. Robinson P. J.; Rhodes D. Curr. Opin. Struct. Biol. 2006, 16, 336. 16714106
  9. Luger K.; Mäder A. W.; Richmond R. K.; Sargent D. F.; Richmond T. J. Nature 1997, 389, 251. 9305837
  10. Lowary P. T.; Widom J. J. Mol. Biol. 1998, 276, 19. 9514715
  11. Song F.; Chen P.; Sun D.; Wang M.; Dong L.; Liang D.; Xu R.-M.; Zhu P.; Li G. Science 2014, 344, 376. 24763583
  12. Robinson P. J. J.; Fairall L.; Huynh V. A. T.; Rhodes D. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 6506. 16617109 PMC1436021
  13. Schalch T.; Duda S.; Sargent D. F.; Richmond T. J. Nature 2005, 436, 138. 16001076
  14. Flaus A.; Luger K.; Tan S.; Richmond T. J. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 1370. 8643638 PMC39944
  15. Arents G.; Burlingame R. W.; Wang B. C.; Love W. E.; Moudrianakis E. N. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 10148. 1946434 PMC52885
  16. Arents G.; Moudrianakis E. N. Proc. Natl. Acad. Sci. U.S.A. 1995, 92, 11170. 7479959 PMC40593
  17. Davey C. A.; Sargent D. F.; Luger K.; Maeder A. W.; Richmond T. J. J. Mol. Biol. 2002, 319, 1097. 12079350
  18. McGinty R. K.; Tan S. In Fundamentals of Chromatin; Springer: New York: New York, NY, 2013; pp 1– 28.
  19. Preez du L. L.; Patterton H.-G. Subcell. Biochem. 2013, 61, 37. 23150245
  20. Zheng C.; Hayes J. J. J. Biol. Chem. 2003, 278, 24217. 12697747
  21. Kan P. Y.; Lu X.; Hansen J. C.; Hayes J. J. Mol. Cell. Biol. 2007, 27, 2084. 17242202 PMC1820515
  22. Kan P. Y.; Caterino T. L.; Hayes J. J. Mol. Cell. Biol. 2009, 29, 538. 19001093 PMC2612503
  23. White C. L.; Suto R. K.; Luger K. EMBO J. 2001, 20, 5207. 11566884 PMC125637
  24. Clapier C. R.; Chakravarthy S.; Petosa C.; Fernández-Tornero C.; Luger K.; Müller C. W. Proteins 2008, 71, 1. 17957772 PMC2443955
  25. Tsunaka Y.; Kajimura N.; Tate S.-I.; Morikawa K. Nucleic Acids Res. 2005, 33, 3424. 15951514 PMC1150222
  26. Sugiyama M.; Arimura Y.; Shirayama K.; Fujita R.; Oba Y.; Sato N.; Inoue R.; Oda T.; Sato M.; Heenan R. K.; Kurumizaka H. Biophys. J. 2014, 106, 2206. 24853749 PMC4052288
  27. Urahama T.; Horikoshi N.; Osakabe A.; Tachiwana H.; Kurumizaka H. Acta Crystallogr., Sect. F: Struct. Biol. Cryst. Commun. 2014, 70, 444. PMC3976059 24699735
  28. Tachiwana H.; Kagawa W.; Shiga T.; Osakabe A.; Miya Y.; Saito K.; Hayashi-Takanaka Y.; Oda T.; Sato M.; Park S.-Y.; Kimura H.; Kurumizaka H. Nature 2011, 476, 232. 21743476
  29. Tachiwana H.; Osakabe A.; Shiga T.; Miya Y.; Kimura H.; Kagawa W.; Kurumizaka H. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2011, 67, 578. 21636898
  30. Tachiwana H.; Kagawa W.; Osakabe A.; Kawaguchi K.; Shiga T.; Hayashi-Takanaka Y.; Kimura H.; Kurumizaka H. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 10454. 20498094 PMC2890842
  31. Arimura Y.; Kimura H.; Oda T.; Sato K.; Osakabe A.; Tachiwana H.; Sato Y.; Kinugasa Y.; Ikura T.; Sugiyama M.; Sato M.; Kurumizaka H. Sci. Rep. 2013, 3, 3510. 24336483 PMC3863819
  32. Chakravarthy S.; Bao Y.; Roberts V. A.; Tremethick D.; Luger K. Cold Spring Harbor Symp. Quant. Biol. 2004, 69, 227. 16117653
  33. Chakravarthy S.; Gundimella S. K. Y.; Caron C.; Perche P.-Y.; Pehrson J. R.; Khochbin S.; Luger K. Mol. Cell. Biol. 2005, 25, 7616. 16107708 PMC1190287
  34. Chakravarthy S.; Luger K. J. Biol. Chem. 2006, 281, 25522. 16803903
  35. Abbott D. W.; Laszczak M.; Lewis J. D.; Su H.; Moore S. C.; Hills M.; Dimitrov S.; Ausio J. Biochemistry 2004, 43, 1352. 14756572
  36. Eirín-López J. M.; Ishibashi T.; Ausio J. FASEB J. 2008, 22, 316. 17726088
  37. Horikoshi N.; Sato K.; Shimada K.; Arimura Y.; Osakabe A.; Tachiwana H.; Hayashi-Takanaka Y.; Iwasaki W.; Kagawa W.; Harata M.; Kimura H.; Kurumizaka H. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2013, 69, 2431. 24311584 PMC3852653
  38. Suto R. K.; Clarkson M. J.; Tremethick D. J.; Luger K. Nat. Struct. Biol. 2000, 7, 1121. 11101893
  39. Dechassa M. L.; Wyns K.; Li M.; Hall M. A.; Wang M. D.; Luger K. Nat. Commun. 2011, 2, 313. 21587230 PMC3112535
  40. Conde e Silva N.; Black B. E.; Sivolob A.; Filipski J.; Cleveland D. W.; Prunell A. J. Mol. Biol. 2007, 370, 555. 17524417
  41. Sekulic N.; Bassett E. A.; Rogers D. J.; Black B. E. Nature 2010, 467, 347. 20739937 PMC2946842
  42. Kingston I. J.; Yung J. S. Y.; Singleton M. R. J. Biol. Chem. 2011, 286, 4021. 21115484 PMC3030402
  43. Panchenko T.; Sorensen T. C.; Woodcock C. L.; Kan Z.-Y.; Wood S.; Resch M. G.; Luger K.; Englander S. W.; Hansen J. C.; Black B. E. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 16588. 21949362 PMC3189058
  44. Doyen C.-M.; Montel F.; Gautier T.; Menoni H.; Claudet C.; Delacour-Larose M.; Angelov D.; Hamiche A.; Bednar J.; Faivre-Moskalenko C.; Bouvet P.; Dimitrov S. EMBO J. 2006, 25, 4234. 16957777 PMC1570437
  45. Cosgrove M. S.; Wolberger C. Biochem. Cell Biol. 2005, 83, 468. 16094450
  46. Cosgrove M. S.; Boeke J. D.; Wolberger C. Nat. Struct. Mol. Biol. 2004, 11, 1037. 15523479
  47. Mersfelder E. L.; Parthun M. R. Nucleic Acids Res. 2006, 34, 2653. 16714444 PMC1464108
  48. North J. A.; Šimon M.; Ferdinand M. B.; Shoffner M. A.; Picking J. W.; Howard C. J.; Mooney A. M.; van Noort J.; Poirier M. G.; Ottesen J. J. Nucleic Acids Res. 2014, 42, 4922. 24561803 PMC4005658
  49. North J. A.; Javaid S.; Ferdinand M. B.; Chatterjee N.; Picking J. W.; Shoffner M.; Nakkula R. J.; Bartholomew B.; Ottesen J. J.; Fishel R.; Poirier M. G. Nucleic Acids Res. 2011, 39, 6465. 21576235 PMC3159469
  50. Manohar M.; Mooney A. M.; North J. A.; Nakkula R. J.; Picking J. W.; Edon A.; Fishel R.; Poirier M. G.; Ottesen J. J. J. Biol. Chem. 2009, 284, 23312. 19520870 PMC2749105
  51. Šimon M.; North J. A.; Shimko J. C.; Forties R. A.; Ferdinand M. B.; Manohar M.; Zhang M.; Fishel R.; Ottesen J. J.; Poirier M. G. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12711. 21768347 PMC3150920
  52. Makde R. D.; England J. R.; Yennawar H. P.; Tan S. Nature 2010, 467, 562. 20739938 PMC3168546
  53. Vasudevan D.; Chua E. Y. D.; Davey C. A. J. Mol. Biol. 2010, 403, 1. 20800598
  54. Finch J. T.; Brown R. S.; Richmond T.; Rushton B.; Lutter L. C.; Klug A. J. Mol. Biol. 1981, 145, 757. 7265219
  55. Richmond T. J.; Finch J. T.; Rushton B.; Rhodes D.; Klug A. Nature 1984, 311, 532. 6482966
  56. Richmond T. J.; Finch J. T.; Klug A. Cold Spring Harbor Symp. Quant. Biol. 1983, 47, 493. 6574855
  57. Richmond T. J.; Searles M. A.; Simpson R. T. J. Mol. Biol. 1988, 199, 161. 3351917
  58. Simpson R. T.; Stafford D. W. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 51. 6572008 PMC393307
  59. Harp J. M.; Palmer E. L.; York M. H.; Gewiess A.; Davis M.; Bunick G. J. Electrophoresis 1995, 16, 1861. 8586054
  60. Satchwell S. C.; Drew H. R.; Travers A. A. J. Mol. Biol. 1986, 191, 659. 3806678
  61. Chua E. Y. D.; Vasudevan D.; Davey G. E.; Wu B.; Davey C. A. Nucleic Acids Res. 2012, 40, 6338. 22453276 PMC3401446
  62. Kulaeva O. I.; Gaykalova D. A.; Pestov N. A.; Golovastov V. V.; Vassylyev D. G.; Artsimovitch I.; Studitsky V. M. Nat. Struct. Mol. Biol. 2009, 16, 1272. 19935686 PMC2919570
  63. Cui F.; Zhurkin V. B. J. Biomol. Struct. Dyn. 2010, 27, 821. 20232936 PMC2993692
  64. Tolstorukov M. Y.; Colasanti A. V.; McCandlish D. M.; Olson W. K.; Zhurkin V. B. J. Mol. Biol. 2007, 371, 725. 17585938 PMC2000845
  65. Travers A. A. Philos. Trans. R. Soc., A 2004, 362, 1423. 15306459
  66. Travers A. A.; Muskhelishvili G.; Thompson J. M. T. Philos. Trans. R. Soc., A 2012, 370, 2960. 22615471
  67. Olson W. K.; Zhurkin V. B. Curr. Opin. Struct. Biol. 2011, 21, 348. 21482100 PMC3112303
  68. Richmond T. J.; Davey C. A. Nature 2003, 423, 145. 12736678
  69. Juo Z. S.; Chiu T. K.; Leiberman P. M.; Baikalov I.; Berk A. J.; Dickerson R. E. J. Mol. Biol. 1996, 261, 239. 8757291
  70. Kim Y.; Geiger J. H.; Hahn S.; Sigler P. B. Nature 1993, 365, 512. 8413604
  71. Kim J. L.; Nikolov D. B.; Burley S. K. Nature 1993, 365, 520. 8413605
  72. Olson W. K.; Gorin A. A.; Lu X.-J.; Hock L. M.; Zhurkin V. B. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 11163. 9736707 PMC21613
  73. Bondarenko V. A.; Steele L. M.; Ujvári A.; Gaykalova D. A.; Kulaeva O. I.; Polikanov Y. S.; Luse D. S.; Studitsky V. M. Mol. Cell 2006, 24, 469. 17081995
  74. Makde R. D.; Tan S. Anal. Biochem. 2013, 442, 138. 23928047 PMC3799870
  75. Hock R.; Furusawa T.; Ueda T.; Bustin M. Trends Cell Biol. 2007, 17, 72. 17169561 PMC2442274
  76. Canzio D.; Liao M.; Naber N.; Pate E.; Larson A.; Wu S.; Marina D. B.; Garcia J. F.; Madhani H. D.; Cooke R.; Schuck P.; Cheng Y.; Narlikar G. J. Nature 2013, 496, 377. 23485968 PMC3907283
  77. Armache K. J.; Garlick J. D.; Canzio D.; Narlikar G. J.; Kingston R. E. Science 2011, 334, 977. 22096199 PMC4098850
  78. Barbera A. J.; Chodaparambil J. V.; Kelley-Clarke B.; Joukov V.; Walter J. C.; Luger K.; Kaye K. M. Science 2006, 311, 856. 16469929
  79. Marmorstein R.; Trievel R. C. Biochim. Biophys. Acta, Gene Regul. Mech. 2009, 1789, 58. PMC4059211 18722564
  80. Musselman C. A.; Lalonde M.-E.; Côté J.; Kutateladze T. G. Nat. Struct. Mol. Biol. 2012, 19, 1218. 23211769 PMC3645987
  81. Ruthenburg A. J.; Li H.; Patel D. J.; Allis C. D. Nat. Rev. Mol. Cell Biol. 2007, 8, 983. 18037899 PMC4690530
  82. Zhou B.-R.; Feng H.; Ghirlando R.; Kato H.; Gruschus J.; Bai Y. J. Mol. Biol. 2012, 421, 30. 22575889 PMC3392517
  83. Dorigo B.; Schalch T.; Bystricky K.; Richmond T. J. J. Mol. Biol. 2003, 327, 85. 12614610
  84. Robinson P. J. J.; An W.; Routh A.; Martino F.; Chapman L.; Roeder R. G.; Rhodes D. J. Mol. Biol. 2008, 381, 816. 18653199 PMC3870898
  85. Allahverdi A.; Yang R.; Korolev N.; Fan Y.; Davey C. A.; Liu C. F.; Nordenskiold L. Nucleic Acids Res. 2011, 39, 1680. 21047799 PMC3061077
  86. Dorigo B.; Schalch T.; Kulangara A.; Duda S.; Schroeder R. R.; Richmond T. J. Science 2004, 306, 1571. 15567867
  87. Sinha D.; Shogren-Knaak M. A. J. Biol. Chem. 2010, 285, 16572. 20351095 PMC2878085
  88. Yang D.; Arya G. Phys. Chem. Chem. Phys. 2011, 13, 2911. 21157623
  89. Barbera A. J.; Ballestas M. E.; Kaye K. M. J. Virol. 2004, 78, 294. 14671111 PMC303411
  90. Clarke P. R.; Zhang C. Nat. Rev. Mol. Cell Biol. 2008, 9, 464. 18478030
  91. Carazo-Salas R. E.; Guarguaglini G.; Gruss O. J.; Segref A.; Karsenti E.; Mattaj I. W. Nature 1999, 400, 178. 10408446
  92. Kalab P.; Heald R. J. Cell Sci. 2008, 121, 1577. 18469014 PMC7185306
  93. Nemergut M. E.; Mizzen C. A.; Stukenberg T.; Allis C. D.; Macara I. G. Science 2001, 292, 1540. 11375490
  94. England J. R.; Huang J.; Jennings M. J.; Makde R. D.; Tan S. J. Mol. Biol. 2010, 398, 518. 20347844 PMC2895563
  95. Rusche L. N.; Kirchmaier A. L.; Rine J. Annu. Rev. Biochem. 2003, 72, 481. 12676793
  96. McBryant S. J.; Krause C.; Woodcock C. L.; Hansen J. C. Mol. Cell. Biol. 2008, 28, 3563. 18362167 PMC2423291
  97. Johnson A.; Li G.; Sikorski T. W.; Buratowski S.; Woodcock C. L.; Moazed D. Mol. Cell 2009, 35, 769. 19782027 PMC2842978
  98. Martino F.; Kueng S.; Robinson P.; Tsai-Pflugfelder M.; van Leeuwen F.; Ziegler M.; Cubizolles F.; Cockell M. M.; Rhodes D.; Gasser S. M. Mol. Cell 2009, 33, 323. 19217406
  99. Norris A.; Bianchet M. A.; Boeke J. D. PLoS Genet. 2008, 4, e1000301. 19079580 PMC2587916
  100. Singer M. S.; Kahana A.; Wolf A. J.; Meisinger L. L.; Peterson S. E.; Goggin C.; Mahowald M.; Gottschling D. E. Genetics 1998, 150, 613. 9755194 PMC1460361
  101. Ng H. H.; Ciccone D. N.; Morshead K. B.; Oettinger M. A.; Struhl K. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 1820. 12574507 PMC149917
  102. van Leeuwen F.; Gafken P. R.; Gottschling D. E. Cell 2002, 109, 745. 12086673
  103. Arnaudo N.; Fernández I. S.; McLaughlin S. H.; Peak-Chew S. Y.; Rhodes D.; Martino F. Nat. Struct. Mol. Biol. 2013, 20, 1119. 23934150 PMC3818696
  104. Yang D.; Fang Q.; Wang M.; Ren R.; Wang H.; He M.; Sun Y.; Yang N.; Xu R.-M. Nat. Struct. Mol. Biol. 2013, 20, 1116. 23934152
  105. Connelly J. J.; Yuan P.; Hsu H.-C.; Li Z.; Xu R.-M.; Sternglanz R. Mol. Cell. Biol. 2006, 26, 3256. 16581798 PMC1446965
  106. Kato H.; Jiang J.; Zhou B.-R.; Rozendaal M.; Feng H.; Ghirlando R.; Xiao T. S.; Straight A. F.; Bai Y. Science 2013, 340, 1110. 23723239 PMC3763809
  107. Henikoff S.; Ahmad K.; Malik H. S. Science 2001, 293, 1098. 11498581
  108. Verdaasdonk J. S.; Bloom K. Nat. Rev. Mol. Cell Biol. 2011, 12, 320. 21508988 PMC3288958
  109. Hori T.; Amano M.; Suzuki A.; Backer C. B.; Welburn J. P.; Dong Y.; McEwen B. F.; Shang W.-H.; Suzuki E.; Okawa K.; Cheeseman I. M.; Fukagawa T. Cell 2008, 135, 1039. 19070575
  110. McGinty R. K.; Henrici R. C.; Tan S. Nature 2014, 514, 591. 25355358 PMC4215650
  111. Cao R.; Tsukada Y.-I.; Zhang Y. Mol. Cell 2005, 20, 845. 16359901
  112. Grau D. J.; Chapman B. A.; Garlick J. D.; Borowsky M.; Francis N. J.; Kingston R. E. Genes Dev. 2011, 25, 2210. 22012622 PMC3205590
  113. Simon J. A.; Kingston R. E. Nat. Rev. Mol. Cell Biol. 2009, 10, 697. 19738629
  114. Buchwald G.; van der Stoop P.; Weichenrieder O.; Perrakis A.; van Lohuizen M.; Sixma T. K. EMBO J. 2006, 25, 2465. 16710298 PMC1478191
  115. Bentley M. L.; Corn J. E.; Dong K. C.; Phung Q.; Cheung T. K.; Cochran A. G. EMBO J. 2011, 30, 3285. 21772249 PMC3160663
  116. Leung J. W.; Agarwal P.; Canny M. D.; Gong F.; Robison A. D.; Finkelstein I. J.; Durocher D.; Miller K. M. PLoS Genet. 2014, 10, e1004178. 24603765 PMC3945288
  117. Kato H.; van Ingen H.; Zhou B.-R.; Feng H.; Bustin M.; Kay L. E.; Bai Y. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12283. 21730181 PMC3145696
  118. Zhou B.-R.; Feng H.; Kato H.; Dai L.; Yang Y.; Zhou Y.; Bai Y. Proc. Natl. Acad. Sci. U.S.A. 2013, 110, 19390. 24218562 PMC3845106
  119. Rattner B. P.; Yusufzai T.; Kadonaga J. T. Mol. Cell 2009, 34, 620. 19524541 PMC2709789
  120. Lim J.-H.; West K. L.; Rubinstein Y.; Bergel M.; Postnikov Y. V.; Bustin M. EMBO J. 2005, 24, 3038. 16096646 PMC1201349
  121. Lim J.-H.; Catez F.; Birger Y.; West K. L.; Prymakowska-Bosak M.; Postnikov Y. V.; Bustin M. Mol. Cell 2004, 15, 573. 15327773
  122. Postnikov Y.; Bustin M. Biochim. Biophys. Acta, Gene Regul. Mech. 2010, 1799, 62. PMC2818575 19948260
  123. Prymakowska-Bosak M.; Misteli T.; Herrera J. E.; Shirakawa H.; Birger Y.; Garfield S.; Bustin M. Mol. Cell. Biol. 2001, 21, 5169. 11438671 PMC87241
  124. Mattiroli F.; Uckelmann M.; Sahtoe D. D.; van Dijk W. J.; Sixma T. K. Nat. Commun. 2014, 5, 3291. 24518117 PMC3929782
  125. Carriere V.; Roussel L.; Ortega N.; Lacorre D.-A.; Americh L.; Aguilar L.; Bouche G.; Girard J.-P. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 282. 17185418 PMC1765450
  126. Kalashnikova A. A.; Porter-Goff M. E.; Muthurajan U. M.; Luger K.; Hansen J. C. J. R. Soc., Interface 2013, 10, 20121022. 23446052 PMC3627075
  127. Clapier C. R.; Cairns B. R. Annu. Rev. Biochem. 2009, 78, 273. 19355820
  128. Chaban Y.; Ezeokonkwo C.; Chung W.-H.; Zhang F.; Kornberg R. D.; Maier-Davis B.; Lorch Y.; Asturias F. J. Nat. Struct. Mol. Biol. 2008, 15, 1272. 19029894 PMC2659406
  129. Asturias F. J.; Chung W.-H.; Kornberg R. D.; Lorch Y. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 13477. 12368485 PMC129698
  130. Saha A.; Wittmeyer J.; Cairns B. R. Nat. Struct. Mol. Biol. 2005, 12, 747. 16086025
  131. Leschziner A. E.; Saha A.; Wittmeyer J.; Zhang Y.; Bustamante C.; Cairns B. R.; Nogales E. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 4913. 17360331 PMC1820885
  132. Racki L. R.; Yang J. G.; Naber N.; Partensky P. D.; Acevedo A.; Purcell T. J.; Cooke R.; Cheng Y.; Narlikar G. J. Nature 2009, 462, 1016. 20033039 PMC2869534
  133. Yamada K.; Frouws T. D.; Angst B.; Fitzgerald D. J.; DeLuca C.; Schimmele K.; Sargent D. F.; Richmond T. J. Nature 2011, 472, 448. 21525927
  134. Saravanan M.; Wuerges J.; Bose D.; McCormack E. A.; Cook N. J.; Zhang X.; Wigley D. B. Proc. Natl. Acad. Sci. U.S.A. 2012, 109, 20883. 23213201 PMC3529010
  135. Tosi A.; Haas C.; Herzog F.; Gilmozzi A.; Berninghausen O.; Ungewickell C.; Gerhold C. B.; Lakomek K.; Aebersold R.; Beckmann R.; Hopfner K.-P. Cell 2013, 154, 1207. 24034245
  136. Chittuluru J. R.; Chaban Y.; Monnet-Saksouk J.; Carrozza M. J.; Sapountzi V.; Selleck W.; Huang J.; Utley R. T.; Cramet M.; Allard S.; Cai G.; Workman J. L.; Fried M. G.; Tan S.; Côté J.; Asturias F. J. Nat. Struct. Mol. Biol. 2011, 18, 1196. 21984211 PMC3210417
  137. Boudreault A. A.; Cronier D.; Selleck W.; Lacoste N.; Utley R. T.; Allard S.; Savard J.; Lane W. S.; Tan S.; Côté J. Genes Dev. 2003, 17, 1415. 12782659 PMC196073
  138. Huang J.; Tan S. Mol. Cell. Biol. 2013, 33, 159. 23109429 PMC3536312
  139. Harshman S. W.; Young N. L.; Parthun M. R.; Freitas M. A. Nucleic Acids Res. 2013, 41, 9593. 23945933 PMC3834806
  140. Allan J.; Hartman P. G.; Crane-Robinson C.; Aviles F. X. Nature 1980, 288, 675. 7453800
  141. Syed S. H.; Goutte-Gattat D.; Becker N.; Meyer S.; Shukla M. S.; Hayes J. J.; Everaers R.; Angelov D.; Bednar J.; Dimitrov S. Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 9620. 20457934 PMC2906896
  142. Fan L.; Roberts V. A. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 8384. 16717183 PMC1482502
  143. Meyer S.; Becker N. B.; Syed S. H.; Goutte-Gattat D.; Shukla M. S.; Hayes J. J.; Angelov D.; Bednar J.; Dimitrov S.; Everaers R. Nucleic Acids Res. 2011, 39, 9139. 21835779 PMC3241633
  144. Zhou Y. B.; Gerchman S. E.; Ramakrishnan V.; Travers A.; Muyldermans S. Nature 1998, 395, 402. 9759733
  145. Bharath M. M. S.; Chandra N. R.; Rao M. R. S. Nucleic Acids Res. 2003, 31, 4264. 12853645 PMC167642
  146. Wong J.; Li Q.; Levi B. Z.; Shi Y. B.; Wolffe A. P. EMBO J. 1997, 16, 7130. 9384590 PMC1170314
  147. Pachov G. V.; Gabdoulline R. R.; Wade R. C. Nucleic Acids Res. 2011, 39, 5255. 21355036 PMC3130272
  148. An W.; Leuba S. H.; van Holde K.; Zlatanova J. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 3396. 9520377 PMC19847
  149. Vogler C.; Huber C.; Waldmann T.; Ettig R.; Braun L.; Izzo A.; Daujat S.; Chassignet I.; Lopez-Contreras A. J.; Fernandez-Capetillo O.; Dundr M.; Rippe K.; Längst G.; Schneider R. PLoS Genet. 2010, 6, e1001234. 21170357 PMC3000355
  150. Thakar A.; Gupta P.; Ishibashi T.; Finn R.; Silva-Moreno B.; Uchiyama S.; Fukui K.; Tomschik M.; Ausio J.; Zlatanova J. Biochemistry 2009, 48, 10852. 19856965
  151. McGhee J. D.; Nickol J. M.; Felsenfeld G.; Rau D. C. Cell 1983, 33, 831. 6871995
  152. Widom J.; Klug A. Cell 1985, 43, 207. 4075395
  153. Thoma F.; Koller T.; Klug A. J. Cell Biol. 2003, 83, 403. 387806 PMC2111545
  154. Worcel A.; Strogatz S.; Riley D. Proc. Natl. Acad. Sci. U.S.A. 1981, 78, 1461. 6940168 PMC319150
  155. Woodcock C. L.; Frado L. L.; Rattner J. B. J. Cell Biol. 2002, 99, 42. 6736132 PMC2275637
  156. Williams S. P.; Athey B. D.; Muglia L. J.; Schappe R. S.; Gough A. H.; Langmore J. P. Biophys. J. 1986, 49, 233. 3955173 PMC1329627
  157. Wong H.; Victor J.-M.; Mozziconacci J. PLoS One 2007, 2, e877. 17849006 PMC1963316
  158. Eltsov M.; MacLellan K. M.; Maeshima K.; Frangakis A. S.; Dubochet J. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 19732. 19064912 PMC2604964
  159. Maeshima K.; Hihara S.; Eltsov M. Curr. Opin. Cell Biol. 2010, 22, 291. 20346642
  160. Joti Y.; Hikima T.; Nishino Y.; Kamada F.; Hihara S.; Takata H.; Ishikawa T.; Maeshima K. Nucleus 2012, 3, 404. 22825571 PMC3474659
  161. Nishino Y.; Eltsov M.; Joti Y.; Ito K.; Takata H.; Takahashi Y.; Hihara S.; Frangakis A. S.; Imamoto N.; Ishikawa T.; Maeshima K. EMBO J. 2012, 31, 1644. 22343941 PMC3321210
  162. Hansen J. C. EMBO J. 2012, 31, 1621. 22415369 PMC3321215
  163. Baker N. A.; Sept D.; Joseph S.; Holst M. J.; McCammon J. A. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 10037. 11517324 PMC56910

Cited by

Sorted by citations

Authors
McGinty, R. K., & Tan, S.
Affiliations
Pennsylvania State University (US)
Corresponding author
Tan, Song
Venue
Chemical Reviews
Published
2014-12-12
Volume
115
Issue
6
Pages
2255-2273
ISSN
  • 0009-2665 (ISSN-L)
  • 1520-6890
OpenAlex
W2077319657
Cited by
530
References
2
Citations by year
2026: 46 · 2025: 50 · 2024: 60 · 2023: 39 · 2022: 60 · 2021: 55 · 2020: 63 · 2019: 59 · 2018: 40 · 2017: 23 · 2016: 30 · 2015: 4
FWCI
1.79
Type
journal article
Language
en
Open access
Locations
  • Chemical Reviews (publishedVersion, other-oa)
  • Europe PMC (PubMed Central) (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
  • National Institute of General Medical Sciences (GM060489-09S1, GM088236, GM111651)
  • Damon Runyon Cancer Research Foundation (DRG-2107-12)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Chromatin Dynamics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Nuclear Structure and Function
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Chromatin Remodeling and Cancer
Keywords
nucleosome, nucleosome structure, DNA packaging, histone-DNA interactions, chromatin, eukaryotic gene regulation
MeSH terms
Humans, Models, Molecular, Nucleosomes

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review