Lipids Out of Equilibrium: Energetics of Desorption and Pore Mediated Flip-Flop
Cited by (235)
Items 101–200 of 235
- Energetics of Endotoxin Recognition in the Toll-Like Receptor 4 Innate Immune ResponseTeresa Páramo, Susana M. Tomásio, Katherine L. Irvine, Clare Elizabeth Bryant, Peter John Bond · 2015 · Scientific Reports
- Surface-Functionalized Nanoparticle Permeation Triggers Lipid Displacement and Water and Ion LeakagePriyanka A. Oroskar, Cynthia Juan Jameson, Sohail Murad · 2014 · Langmuir
- Simulations of Asymmetric Membranes Illustrate Cooperative Leaflet Coupling and Lipid AdaptabilityMadison Blumer, Sophia Harris, Mengzhe Li, Luis Martinez, Michael Untereiner, Peter N. Saeta, Timothy S. Carpenter, Helgi I. Ingólfsson, William F. Bennett · 2020 · Frontiers in Cell and Developmental Biology
- Water-Membrane Partition Thermodynamics of an Amphiphilic Lipopeptide: An Enthalpy-Driven Hydrophobic EffectAlemayehu Abebe Gorfe, Riccardo Baron, James Andrew McCammon · 2008 · Biophysical Journal
- Behavior of 4-Hydroxynonenal in Phospholipid MembranesMario Vazdar, Piotr Jurkiewicz, Martin Hof, Pavel Jungwirth, Lukasz Cwiklik · 2012 · The Journal of Physical Chemistry B
- Alteration of lipid membrane structure and dynamics by diacylglycerols with unsaturated chainsMohammad Alwarawrah, Fazle Hussain, Juyang Huang · 2015 · Biochimica et Biophysica Acta (BBA) - Biomembranes
- The cellular uptake of pharmaceutical drugs is mainly carrier-mediated and is thus an issue not so much of biophysics but of systems biologyDouglas Bruce Kell, Paul D. Dobson · 2009
- Molecular Dynamics Simulation Analysis of Membrane Defects and Pore Propensity of Hemifusion DiaphragmsManami Nishizawa, Kazuhisa Nishizawa · 2013 · Biophysical Journal
- Understanding Miltefosine–Membrane Interactions Using Molecular Dynamics SimulationsMatheus Malta de Sá, Vishnu Sresht, Carlota de Oliveira Rangel‐Yagui, Daniel Blankschtein · 2015 · Langmuir
- Effects of truncating van der Waals interactions in lipid bilayer simulationsKun Huang, Angel E. Garcı́a · 2014 · The Journal of Chemical Physics
- Free-energy calculation methods for collective phenomena in membranesYuliya G. Smirnova, Marc Fuhrmans, I. A. Barragán Vidal, Marcus Müller · 2015 · Journal of Physics D Applied Physics
- Passive Transmembrane Permeation Mechanisms of Monovalent Ions Explored by Molecular Dynamics SimulationsHui-Yuan Zhang, Qin Xu, Yu-Kun Wang, Tang-Zhen Zhao, Dan Hu, Dong‐Qing Wei · 2016 · Journal of Chemical Theory and Computation
- Transmembrane Permeation Mechanism of Charged Methyl GuanidineYukun Wang, Dan Hu, Dong‐Qing Wei · 2014 · Journal of Chemical Theory and Computation
- Lipid Head Group Parameterization for GROMOS 54A8: A Consistent Approach with Protein Force Field DescriptionIrene Marzuoli, Christian Margreitter, Franca Fraternali · 2019 · Journal of Chemical Theory and Computation
- Free-Energy Analysis of Peptide Binding in Lipid Membrane Using All-Atom Molecular Dynamics Simulation Combined with Theory of SolutionsTomoko Mizuguchi, Nobuyuki Matubayasi · 2018 · The Journal of Physical Chemistry B
- Solvent-Free, Highly Coarse-Grained Models for Charged Lipid SystemsAnand Kumar Srivastava, Gregory A. Voth · 2014 · Journal of Chemical Theory and Computation
- 5.10 Interactions of Antimicrobial Peptides with Lipid BilayersPaulo F. F. Almeida, Antje Pokorny · 2012 · Elsevier eBooks
- Membrane Permeability of Fatty Acyl Compounds Studied via Molecular SimulationJosh V. Vermaas, Gregg T. Beckham, Michael F. Crowley · 2017 · The Journal of Physical Chemistry B
- Model studies of lipid flip-flop in membranesGiulia Parisio, Alberta Ferrarini, Maria Maddalena Sperotto · 2016 · International Journal of Advances in Engineering Sciences and Applied Mathematics
- Aggregation Thermodynamics of Sodium Octanoate Micelles Studied by Means of Molecular Dynamics SimulationsKalil Bernardino, André Farias de Moura · 2013 · The Journal of Physical Chemistry B
- Breakage of Hydrophobic Contacts Limits the Rate of Passive Lipid Exchange between MembranesJulia R. Rogers, Phillip L. Geissler · 2020 · The Journal of Physical Chemistry B
- All-Factor Analysis and Correlations on the Transmembrane Process for Arginine-Rich Cell-Penetrating PeptidesCai Yao, Zhengzhong Kang, Bin Yu, Qu Chen, Yingchun Liu, Qi Wang · 2019 · Langmuir
- Simulated Permeation and Characterization of PEGylated Gold Nanoparticles in a Lipid Bilayer SystemPriyanka A. Oroskar, Cynthia Juan Jameson, Sohail Murad · 2016 · Langmuir
- Phosphatidylserine flip‐flop induced by oxidation of the plasma membrane: a better insight by atomic scale modelingJamoliddin Razzokov, Maksudbek Yusupov, Steven Vanuytsel, Erik Cornelis Neyts, Annemie Bogaerts · 2017 · Plasma Processes and Polymers
- Free energy of hydrophilic and hydrophobic pores in lipid bilayers by free energy perturbation of a restraintMayank Kumar Dixit, Themis Lazaridis · 2020 · The Journal of Chemical Physics
- Selectivity and Cooperativity of Modulatory Ions in a Neurotransmitter ReceptorRanjit Vijayan, Andrew J.R. Plested, Mark L. Mayer, Philip Charles Biggin · 2009 · Biophysical Journal
- The late stage of COPI vesicle fission requires shorter forms of phosphatidic acid and diacylglycerolSeung‐Yeol Park, Jia‐Shu Yang, Zhen Li, Pan Deng, Xiaohong Zhu, David Young, Maria Ericsson, Ruben L. H. Andringa, Adriaan J. Minnaard, Chunmei Zhu et al. · 2019 · Nature Communications
- Poisson property of the occurrence of flip-flops in a model membraneNoriyoshi Arai, Takuma Akimoto, Eiji Yamamoto, Masato Yasui, Kenji Yasuoka · 2014 · The Journal of Chemical Physics
- Effect of tension and curvature on the chemical potential of lipids in lipid aggregatesAndrea Grafmüller, Reinhard Lipowsky, Volker Knecht · 2012 · Physical Chemistry Chemical Physics
- Improved prediction of bilayer and monolayer properties using a refined BMW-MARTINI force fieldVirginia Miguel, María Angélica Perillo, Marcos Ariel Villarreal · 2016 · Biochimica et Biophysica Acta (BBA) - Biomembranes
- Grafting Charged Species to Membrane-Embedded Scaffolds Dramatically Increases the Rate of Bilayer FlippingReid C. Van Lehn, Alfredo Alexander‐Katz · 2017 · ACS Central Science
- Scaling from Single Molecule to Macroscopic Adhesion at Polymer/Metal InterfacesThomas Utzig, Sangeetha Raman, Markus Valtiner · 2015 · Langmuir
- Membrane Remodeling by the Lytic Fragment of SticholysinII: Implications for the Toroidal Pore ModelHaydeé Mesa Galloso, Pedro Alberto Valiente, Mario E. Valdés‐Tresanco, Raquel F. Epand, María E. Lanio, Richard M. Epand, Carlos Álvarez, D. Peter Tieleman, Uris Ros · 2019 · Biophysical Journal
- Asphaltene precipitation trend and controlling its deposition mechanismHeng Xue, Chengjie Wang, Liping Jiang, Hehua Wang, Zefei Lv, Jinla Huang, Wei Xiao · 2021 · Natural Gas Industry B
- Rhenium‐ and Gold‐Catalyzed Coupling of Aromatic Aldehydes with Trimethyl(phenylethynyl)silane: Synthesis of DiethynylmethanesYoichiro Kuninobu, Eri Ishii, Kazuhiko Takai · 2007 · Angewandte Chemie
- Implicit-solvent dissipative particle dynamics force field based on a four-to-one coarse-grained mapping schemeMingwei Wan, Lianghui Gao, Wei‐Hai Fang · 2018 · PLoS ONE
- Understanding Miltefosine-Membrane Interactions using Molecular Dynamics SimulationsMatheus Malta de Sá, Vishnu Sresht, Daniel Blankschtein, Carlota de Oliveira Rangel‐Yagui · 2014 · Biophysical Journal
- Predicting Critical Micelle Concentrations with Molecular Dynamics Simulations and COSMOmicSven Jakobtorweihen, Denitsa Yordanova, Irina V. Smirnova · 2017 · Chemie Ingenieur Technik
- Sequential Water and Headgroup Merger: Membrane Poration Paths and Energetics from MD SimulationsGreg Bubnis, Helmut Grubmüller · 2020 · Biophysical Journal
- Translocation of a single Arg$$_9$$ peptide across a DOPC/DOPG(4:1) model membrane using the weighted ensemble methodSeungho Choe · 2023 · Scientific Reports
- Simulating Bilayers of Nonionic Surfactants with the GROMOS-Compatible 2016H66 Force FieldCaroline Senac, W. Urbach, Erol Kurtisovski, Philippe H. Hünenberger, Bruno A. C. Horta, Nicolas Taulier, Patrick Fuchs · 2017 · Langmuir
- Lipid Exchange and Transfer on Nanoparticle Supported Lipid Bilayers: Effect of Defects, Ionic Strength, and SizeJelena Drazenovic, Selver Ahmed, Nicole-Marie Tuzinkiewicz, Stephanie Louisa Wunder · 2014 · Langmuir
- Lipid Flip-Flop and Pore Nucleation on Zwitterionic Bilayers are Asymmetric under Ionic ImbalanceJiaqi Lin, Roozbeh Dargazany, Alfredo Alexander‐Katz · 2017 · Small
- Evidence for a credit-card-swipe mechanism in the human PC floppase ABCB4Martin Prescher, Michele Bonus, Jan Stindt, Verena Keitel, Sander H. J. Smits, Holger Gohlke, Lutz Schmitt · 2021 · Structure
- Structural pores not required: Antimicrobial peptides induce ion permeabilization of lipid membranes through transient water channelsVladimir Rosenov Koynarev, Manuela Nader, Kari Kristine Almåsvold Borgos, Henrique Musseli Cezar, Theyencheri Narayanan, Lionel Porcar, Michele Cascella, Reidar Lund · 2025 · Proceedings of the National Academy of Sciences
- Accelerating Lipid Flip-Flop at Low Concentrations: A General Mechanism for Membrane Binding PeptidesManuel Carrer, Josefine Eilsø Nielsen, Henrique Musseli Cezar, Reidar Lund, Michele Cascella, Thereza A. Soares · 2023 · The Journal of Physical Chemistry Letters
- Computational Modeling of Poly(alkylthiophene) Conductive Polymer Insertion into Phospholipid BilayersAlik S. Widge, Yoky Matsuoka, Maria G. Kurnikova · 2007 · Langmuir
- Adsorption Behaviors of DPPC/MO Aggregates on SiO2 SurfacesZhining Wang, Shihe Yang · 2008 · Langmuir
- Stretching effects on the permeability of water molecules across a lipid bilayerAlain Gauthier, Béla Joós · 2007 · The Journal of Chemical Physics
- Effects of temperature and PEG grafting density on the translocation of PEGylated nanoparticles across asymmetric lipid membraneZuoheng Zhang, Xubo Lin, Ning Gu · 2017 · Colloids and Surfaces B Biointerfaces
- The Effect of Tethers on Artificial Cell Membranes: A Coarse-Grained Molecular Dynamics StudyWilliam Hoiles, Rini Gupta, Bruce Cornell, Charles G. Cranfield, Vikram Krishnamurthy · 2016 · PLoS ONE
- Membrane Perturbation and Lipid Flip-Flop Mediated by Graphene NanosheetXiaohong Zhu, Na Li, Changxiong Huang, Zhen Li, Jun Fan · 2020 · The Journal of Physical Chemistry B
- Spontaneous Lipid Flip-Flop in Membranes: A Still Unsettled Picture from Experiments and SimulationsMaria Maddalena Sperotto, Alberta Ferrarini · 2017 · Springer series in biophysics
- Rotational behaviour of PEGylated gold nanorods in a lipid bilayer systemPriyanka A. Oroskar, Cynthia Juan Jameson, Sohail Murad · 2016 · Molecular Physics
- Lipid flip-flop and desorption from supported lipid bilayers is independent of curvatureHaoyuan Jing, Yanbin Wang, Parth Rakesh Desai, Kumaran S. Ramamurthi, Siddhartha Das · 2020 · PLoS ONE
- Physicochemical Properties and Route of Systemic Delivery Control the In Vivo Dynamics and Breakdown of Radiolabeled Gold NanostarsXiaona Wen, Luping Ou, Gabriel Cutshaw, Saji Uthaman, Yu‐Chuan Ou, Tian Zhu, Sarah E. Szakas, Brandon D. Carney, Jacob L. Houghton, Alexander Gundlach‐Graham et al. · 2023 · Small
- Interaction of a calix[4]arene derivative with a DOPC bilayer: Biomolecular simulations towards chloride transportPaulo Jorge Costa, Igor Marques, Vı́tor Félix · 2013 · Biochimica et Biophysica Acta (BBA) - Biomembranes
- Continuum Approaches to Understanding Ion and Peptide Interactions with the MembraneNaomi R. Latorraca, Keith M. Callenberg, Jon P. Boyle, Michael Grabe · 2014 · The Journal of Membrane Biology
- Computer simulation studies on passive recruitment dynamics of lipids induced by the adsorption of charged nanoparticlesYang Li · 2014 · Physical Chemistry Chemical Physics
- The Structural Basis for Lipid and Endotoxin Binding in RP105-MD-1, and Consequences for Regulation of Host Lipopolysaccharide SensitivityMaite L. Ortiz-Suarez, Peter John Bond · 2015 · Structure
- Membrane-mediated amyloid formation of PrP 106–126: A kinetic studyYen Sun, Wei-Chin Hung, Ming-Tao Lee, Huey Wen Huang · 2015 · Biochimica et Biophysica Acta (BBA) - Biomembranes
- Human Immunodeficiency Virus Type 1 Gag Polyprotein Modulates Membrane Physical Properties like a Surfactant: Potential Implications for Virus AssemblyДениева Зарет Гезимахмаевна, Peter I. Kuzmin, Timur R. Galimzyanov, Siddhartha A.K. Datta, Alan R. Rein, Oleg V. Batishchev · 2024 · ACS Infectious Diseases
- Molecular dynamics simulations reveal how characteristics of surface and permeant affect permeation events at the surface of soft matterPriyanka A. Oroskar, Cynthia Juan Jameson, Sohail Murad · 2017 · Molecular Simulation
- Methyl-β-cyclodextrin asymmetrically extracts phospholipid from bilayers, granting tunable control over differential stress in lipid vesiclesTyler R. Reagle, Yuxin Xie, Zheyuan Li, Warner Carnero, Tobias Baumgart · 2024 · Soft Matter
- Conformational and dynamics simulation study of antimicrobial peptide hedistin—heterogeneity of its helix–turn–helix motifGuohua Xu, Min Wu, Lin Wang, Xu Zhang, Shufen Cao, Maili Liu, Yanfang Cui · 2009 · Biochimica et Biophysica Acta (BBA) - Biomembranes
- Martini 3 Limitations in Phospholipid Flip-FlopOndřej Kroutil, Ladislav Bartoš, Ivo Kabelka, Robert Vácha · 2025 · Journal of Chemical Theory and Computation
- Substrate Access Mechanism in a Novel Membrane-Bound Phospholipase A of Pseudomonas aeruginosa Concordant with Specificity and RegioselectivitySabahuddin Ahmad, Christoph Heinrich Strunk, Stephan Schott‐Verdugo, Karl‐Erich Jaeger, Filip Kovačić, Holger Gohlke · 2021 · Journal of Chemical Information and Modeling
- Effect of Acyl Chain Length on the Rate of Phospholipid Flip-Flop and Intermembrane TransferFilipe Manuel Coreta-Gomes, Winchil L.C. Vaz, Maria João Moreno · 2017 · The Journal of Membrane Biology
- Packing and mobility of hydrocarbon chains in phospholipid lyotropic liquid crystalline lamellar phases and liposomes: characterisation by positron annihilation lifetime spectroscopy (PALS)Aurelia W. Dong, Celesta Fong, Lynne J. Waddington, Anita J. Hill, Ben J. Boyd, Calum John Drummond · 2014 · Physical Chemistry Chemical Physics
- Kinetics of a Multilamellar Lipid Vesicle Ripening: Simulation and TheoryRui Xu, Xuehao He · 2016 · The Journal of Physical Chemistry B
- Passive permeability controls synthesis for the allelochemical sorgoleone in sorghum root exudateSaad Raza, Troy Sievertsen, Sakiko Okumoto, Josh V. Vermaas · 2023 · Phytochemistry
- Exploring the Local Elastic Properties of Bilayer Membranes Using Molecular Dynamics SimulationsGilles Paul Pieffet, Alonso Botero, Günther Herbert Johannes Peters, Manu Forero-Shelton, Chad Leidy · 2014 · The Journal of Physical Chemistry B
- Search for the Source of an Apparent Interfacial Resistance To Mass Transfer of CnEm Surfactants To the Water/Oil InterfaceKyle J. Huston, Ashley L. Kiemen, Ronald G. Larson · 2018 · Langmuir
- Collective Dynamics in Lipid Membranes: From Pore Formation to Flip-FlopsAndrey A. Gurtovenko, Ilpo Vattulainen · 2009 · Humana Press eBooks
- AI-guided transition path sampling of lipid flip-flop and membrane nanoporationMatthias Post, Gerhard Hummer · 2025 · Nature Communications
- Influences of the Structure of Lipids on Thermal Stability of Lipid Membranes*Nan-Nan Hai, Xin Zhou, Ming Li · 2015 · Communications in Theoretical Physics
- Inhibition of biogenic membrane flippase activity in reconstituted ER proteoliposomes in the presence of low cholesterol levelsArchita Rajasekharan, Sathyanarayana Naidu Gummadi · 2011 · Cellular & Molecular Biology Letters
- Molecular Dynamics Studies of Nanoparticle Transport Through Model Lipid MembranesCynthia Juan Jameson, Priyanka A. Oroskar, Bo Song, Huajun Yuan, Sohail Murad · 2019 · Springer eBooks
- Interaction of Amphiphilic Molecules with Lipid Bilayers: Kinetics of Insertion, Desorption and TranslocationHugo A. L. Filipe, Renato M. S. Cardoso, Luís M. S. Loura, Maria João Moreno · 2017 · Springer series in biophysics
- Sculpting the shapes of giant unilamellar vesicles using isotropic–nematic–isotropic phase cyclesPurvil Jani, Karthik Nayani, Nicholas Lawrence Abbott · 2021 · Soft Matter
- Passive Translocation of Phospholipids in Asymmetric Model Membranes: Solid-State 1H NMR Characterization of Flip–Flop Kinetics Using Deuterated Sphingomyelin and PhosphatidylcholineHirofumi Watanabe, Shinya Hanashima, Yo Yano, Tomokazu Yasuda, Michio Murata · 2023 · Langmuir
- Designing Reaction Coordinate for Ion-Induced Pore-Assisted Mechanism of Halide Ions Permeation through Lipid Bilayer by Umbrella SamplingAnjana V. Mathath, Bratin Kumar Das, Debashree Chakraborty · 2023 · Journal of Chemical Information and Modeling
- Synergistic effects of hydrophilic residues in the transmembrane region on lipid scrambling activity of dimeric helicesHiroyuki Nakao, Toshiki Tsujii, Hiroaki Saito, Keisuke Ikeda, Minoru Nakano · 2025 · Colloids and Surfaces B Biointerfaces
- Leaflet-Dependent Effect of Anionic Lipids on Membrane Insertion by Cationic Cell-Penetrating PeptidesSydney C. Povilaitis, Lauren J. Webb · 2023 · The Journal of Physical Chemistry Letters
- Free Energy of Lipid Bilayer Defects Affected by Alzheimer’s Disease-Associated Amyloid-β42 MonomersTobias Pobandt, Volker Knecht · 2014 · The Journal of Physical Chemistry B
- The Effect of the Osmotically Active Compound Concentration Difference on the Passive Water and Proton Fluxes across a Lipid BilayerMagdalena Przybyło, Dominik Drabik, Joanna Doskocz, Aleš Iglič, Marek Langner · 2021 · International Journal of Molecular Sciences
- The molecular mechanism of lipid uptake by membrane-anchored bridge-like lipid transfer proteinsÁlvarez, Daniel, Blair, Paige Chandran, Rocha-Roa, Cristian, Davey, Michael, Conibear, Elizabeth, Vanni, Stefano · 2026 · Proceedings of the National Academy of Sciences
- SMARTINI3 parametrization of multi-scale membrane models via unsupervised learning methodsAlireza Soleimani, Herre Jelger Risselada · 2024 · Scientific Reports
- Flip Flop-Associated Growth and Division of Synthetic CellsRafael B. Lira, Marco van Tilburg, Siewert J. Marrink, Cees Dekker · 2026 · ACS Nano
- The free energy of nanopores in tense membranesAndrea Grafmüller, Volker Knecht · 2014 · Physical Chemistry Chemical Physics
- Light-Driven Ca2+ Ion Pump: How Does It Work?Cheng‐Tsung Lai, Yu Zhang, George Chappell Schatz · 2015 · The Journal of Physical Chemistry B
- Understanding cell‐penetrating peptide mechanisms using computational electrophysiology simulationsÈric Catalina-Hernández, Marcel Aguilella‐Arzo, Mario López-Martín, Alex Perálvarez‐Marín · 2026 · Protein Science
- Advances in molecular dynamics approaches for investigating cell-penetrating peptidesÈric Catalina-Hernández, Alex Perálvarez‐Marín · 2026 · Biophysical Reviews
- Free energy profiles of lipid translocation across pure POPC and POPC/CHOL bilayer: all-atom molecular dynamics studyHiroaki Saito, Tetsuya Morishita, Taku Mizukami, Kenichi Nishiyama, Kazutomo Kawaguchi, Hidemi Nagao · 2019 · Journal of Physics Conference Series
- How binding to surfaces affects disorder?Ary Lautaro Di Bartolo, Diego Masone · 2022 · Elsevier eBooks
- Molecular-Level “Observations” of the Behavior of Gold Nanoparticles in Aqueous Solution and Interacting with a Lipid Bilayer MembranePriyanka A. Oroskar, Cynthia Juan Jameson, Sohail Murad · 2019 · Methods in molecular biology
- Chemically tuned radiolabeling and membrane affinity in Drug-Functionalized carbon nanotube nanocarriersSedigheh Abdollahi, Heidar Raissi, Farzaneh Farzad · 2025 · Scientific Reports
- Multiscale (re)modeling of lipid bilayer membranesAndrea Grafmüller · 2019 · Advances in biomembranes and lipid self-assembly
- Bioinformatic methods for the design of antimicrobial peptidesLuis H. Reyes, Juan C. Cruz · 2025 · Elsevier eBooks
- Dynamics and control of the two-pulse protocol in electroporation: Numerical explorationWen Jiang, Xiaopeng Zhao · 2011 · Mathematical Biosciences