Marrink, Siewert J.

Coarse Grained Model for Semiquantitative Lipid Simulations

Marrink, S. J., de Vries, A. H., & Mark, A. E. (2004) · The Journal of Physical Chemistry B

Lipid Membrane Structure and BehaviorAdvanced Physical and Chemical Molecular Interactions

Cited by 2,257

Martini 3: A general purpose force field for coarse-grained molecular dynamics

Souza, P. C. T., Alessandri, R., Barnoud, J., Thallmair, S., Faustino, I., Grünewald, F., Patmanidis, I., Abdizadeh, H., Bruininks, B. M. H., Wassenaar, T. A., et al. (2021) · Nature Methods

Advanced Physical and Chemical Molecular InteractionsProtein Structure and Dynamics

Cited by 1,551

‘Improved parameters for the Martini coarse-grained protein force field’

de Jong, D. H., Singh, G., Bennett, W. F. D., Arnarez, C., Wassenaar, T. A., Schäfer, L. V., Periole, X., Tieleman, D. P., & Marrink, S. J. (2013) · Journal of Chemical Theory and Computation

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 1,486

Computational Lipidomics with insane : A Versatile Tool for Generating Custom Membranes for Molecular Simulations

Wassenaar, T. A., Ingólfsson, H. I., Böckmann, R. A., Tieleman, D. P., & Marrink, S. J. (2015) · Journal of Chemical Theory and Computation

Lipid Membrane Structure and BehaviorProtein Structure and Dynamics

Cited by 1,174

CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field

Qi, Y., Ingólfsson, H. I., Cheng, X., Lee, J., Marrink, S. J., & Im, W. (2015) · Journal of Chemical Theory and Computation

Protein Structure and DynamicsLipid Membrane Structure and Behavior

Cited by 494

Lipids on the move: Simulations of membrane pores, domains, stalks and curves

Marrink, S. J., de Vries, A. H., & Tieleman, D. P. (2009) · Biochimica et Biophysica Acta (BBA) - Biomembranes

Lipid Membrane Structure and BehaviorProtein Structure and Dynamics

Cited by 440

Martini coarse-grained force field: Extension to RNA

Uusitalo, J. J., Ingólfsson, H. I., Marrink, S. J., & Faustino, I. (2017) · Biophysical Journal

Protein Structure and DynamicsRNA and protein synthesis mechanisms

Cited by 259

Two decades of Martini: Better beads, broader scope

Marrink, S. J., Monticelli, L., Melo, M. N., Alessandri, R., Tieleman, D. P., & Souza, P. C. T. (2023) · WIREs Computational Molecular Science

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 255

Lipids Out of Equilibrium: Energetics of Desorption and Pore Mediated Flip-Flop

Tieleman, D. P., & Marrink, S.-J. (2006) · Journal of the American Chemical Society

Lipid Membrane Structure and BehaviorAdvanced Physical and Chemical Molecular Interactions

Cited by 230

CHARMM‐GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides

Hsu, P., Bruininks, B. M. H., Jefferies, D., Cesar Telles de Souza, P., Lee, J., Patel, D. S., Marrink, S. J., Qi, Y., Khalid, S., & Im, W. (2017) · Journal of Computational Chemistry

Lipid Membrane Structure and BehaviorProtein Structure and Dynamics

Cited by 202

Molecular dynamics simulation of an entire cell

Stevens, J. A., Grünewald, F., van Tilburg, P. A. M., König, M., Gilbert, B. R., Brier, T. A., Thornburg, Z. R., Luthey-Schulten, Z., & Marrink, S. J. (2023) · Frontiers in Chemistry

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 156

Solvent-Exposed Tails as Prestalk Transition States for Membrane Fusion at Low Hydration

Smirnova, Y. G., Marrink, S.-J., Lipowsky, R., & Knecht, V. (2010) · Journal of the American Chemical Society

Lipid Membrane Structure and BehaviorCellular transport and secretion

Cited by 149

Martinize2 and Vermouth provide a unified framework for molecular topology generation

Kroon, P. C., Grünewald, F., Barnoud, J., van Tilburg, M., Brasnett, C., Souza, P. C., Wassenaar, T. A., & Marrink, S. J. (2025) · eLife

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 124

Martinize2 and Vermouth: Unified Framework for Topology Generation

Kroon, P. C., Grünewald, F., Barnoud, J., van Tilburg, M., Brasnett, C., Souza, P. C. T., Wassenaar, T. A., & Marrink, S.-J. (2022) · arXiv

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 124

Martini 3 Coarse-Grained Force Field for Carbohydrates

Grünewald, F., Punt, M. H., Jefferys, E. E., Vainikka, P. A., König, M., Virtanen, V., Meyer, T. A., Pezeshkian, W., Gormley, A. J., Karonen, M., et al. (2022) · Journal of Chemical Theory and Computation

Advanced Physical and Chemical Molecular InteractionsProtein Structure and Dynamics

Cited by 116

Cholesterol in bilayers with PUFA chains: doping with DMPC or POPC results in sterol reorientation and membrane-domain formation

Kučerka, N., Marquardt, D., Harroun, T. A., Nieh, M.-P., Wassall, S. R., de Jong, D. H., Schäfer, L. V., Marrink, S. J., & Katsaras, J. (2010) · Biochemistry

Lipid Membrane Structure and BehaviorCholesterol and Lipid Metabolism

Cited by 112

Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling

Pezeshkian, W., Grünewald, F., Narykov, O., Lu, S., Arkhipova, V., Solodovnikov, A., Wassenaar, T. A., Marrink, S. J., & Korkin, D. (2023) · Structure

Protein Structure and DynamicsSARS-CoV-2 and COVID-19 Research

Cited by 60

Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling

Pezeshkian, W., Grünewald, F., Narykov, O., Lu, S., Arkhipova, V., Solodovnikov, A., Wassenaar, T. A., Marrink, S. J., & Korkin, D. (2021) · Structure

Protein Structure and DynamicsSARS-CoV-2 and COVID-19 Research

Cited by 60

Facilitating CG Simulations with MAD: The MArtini Database Server

Hilpert, C., Beranger, L., Souza, P. C. T., Vainikka, P. A., Nieto, V., Marrink, S. J., Monticelli, L., & Launay, G. (2023) · Journal of Chemical Information and Modeling

Protein Structure and DynamicsAdvanced Physical and Chemical Molecular Interactions

Cited by 51

Synthetic Membrane Shaper for Controlled Liposome Deformation

De Franceschi, N., Pezeshkian, W., Fragasso, A., Bruininks, B. M. H., Tsai, S., Marrink, S. J., & Dekker, C. (2023) · ACS Nano

Lipid Membrane Structure and BehaviorAdvanced biosensing and bioanalysis techniques

Cited by 40

An integrative modelling approach to the mitochondrial cristae

Brown, C. M., Westendorp, M. S. S., Zarmiento-Garcia, R., Stevens, J. A., Rouse, S. L., Marrink, S. J., & Wassenaar, T. A. (2024) · Communications Biology

Mitochondrial Function and PathologyProtein Structure and Dynamics

Cited by 21

Dynamics of chromosome organization in a minimal bacterial cell

Gilbert, B. R., Thornburg, Z. R., Brier, T. A., Stevens, J. A., Grünewald, F., Stone, J. E., Marrink, S. J., & Luthey-Schulten, Z. (2023) · Frontiers in Cell and Developmental Biology

Genomics and Chromatin DynamicsBacterial Genetics and Biotechnology

Cited by 19

TS2CG as a membrane builder

Schuhmann, F., Stevens, J. A., Rahmani, N., Lindahl, I., Brown, C. M., Brasnett, C., Anastasiou, D., Bravo Vidal, A., Geiger, B. J., Marrink, S.-J., et al. (2025) · Journal of Chemical Theory and Computation

Lipid Membrane Structure and BehaviorProtein Structure and Dynamics

Cited by 14

Probing the stability and interdomain interactions in the ABC transporter OpuA, using single-molecule optical tweezers

van der Sleen, L., Stevens, J., Marrink, S. J., Poolman, B., & Tych, K. (2023) · Cell Reports

Force Microscopy Techniques and ApplicationsProtein Structure and Dynamics

Cited by 12