Chemoselective Multicomponent One-Pot Assembly of Purine Precursors in Water
Open accessAbstract
The recent development of a sequential, high-yielding route to activated pyrimidine nucleotides, under conditions thought to be prebiotic, is an encouraging step toward the greater goal of a plausible prebiotic pathway to RNA and the potential for an RNA world. However, this synthesis has led to a disparity in the methodology available for stepwise construction of the canonical pyrimidine and purine nucleotides. To address this problem, and further explore prebiotically accessible chemical systems, we have developed a high-yielding, aqueous, one-pot, multicomponent reaction that tethers masked-sugar moieties to prebiotically plausible purine precursors. A pH-dependent three-component reaction system has been discovered that utilizes key nucleotide synthons 2-aminooxazole and 5-aminoimidazoles, which allows the first divergent purine/pyrimidine synthesis to be proposed. Due to regiospecific aminoimidazole tethering, the pathway allows N9 purination only, thus suggesting the first prebiotically plausible mechanism for regiospecific N9 purination.
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TAPs is obtained in 'one pot' from three main components: glyceraldehyde, aminooxazole (AO, obtained from cyanamide and glycoaldehyde) and 5-aminoimidazole-4-carboxamide (AICA).
“This molecule is obtained in 'one pot' from three main components: glyceraldehyde, aminooxazole (AO, obtained from cyanamide and glycoaldehyde, cf. Figures 10 and 11) and 5-aminoimidazole-4carboxamide (AICA, c.f. Figure 11).”
From The Origin and Early Evolution of Life: Homochirality Emergence in Prebiotic Environments (2023) · cites this paper as Powner et al., 2010
The Results and Discussion (Glyceraldehyde; page unavailable) and Experimental Section (compound 24; page unavailable) show a one-pot reaction of glyceraldehyde, 2-aminooxazole, and AICA that produces a purine precursor. The cited passages do not establish the parenthetical claim that the 2-aminooxazole used here was obtained from cyanamide and glycolaldehyde; the cyanamide preparation described in the Experimental Section uses glyceraldehyde and yields a different aminooxazole. (LLM, conf=0.84)
Experimental — accuracy not yet measuredA similar approach has been applied to the chemoselective assembly of purine nucleotide precursors.
“A similar approach has been applied to the chemoselective assembly of purine nucleotide precursors (Powner et al. 2010).”
From Protocells and RNA Self-Replication (2018) · cites this paper as Powner et al. 2010
Purine precursors or PNA nucleotides precursors were also obtained in racemic mixtures.
“Purine precursors or PNA nucleotides (Engelhart and Hud, 2010) precursors were also obtained in racemic mixtures.”
From The Origin and Early Evolution of Life: Homochirality Emergence in Prebiotic Environments (2023) · cites this paper as Powner et al., 2010
AICA was obtained by chemical rearrangement and hydrolysis of hydrogen cyanide tetramers (HCT).
“For instance, AICA was obtained by chemical rearrangement and hydrolysis of hydrogen cyanide tetramers (HCT).(Powner et al., 2010)”
From The Origin and Early Evolution of Life: Homochirality Emergence in Prebiotic Environments (2023) · cites this paper as Powner et al., 2010
Different combinations of aminooxazole, AICAs and glyceraldehyde or different aldehydes including glycoaldehyde or formaldehyde yielded different potential purine precursors.
“Different combinations of aminooxazole, AICAs and glyceraldehyde or different aldehydes including glycoaldehyde of formaldehyde yielded different potential purine precursors.(Powner et al., 2010)”
From The Origin and Early Evolution of Life: Homochirality Emergence in Prebiotic Environments (2023) · cites this paper as Powner et al., 2010
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Cites
Chemical etiology of nucleic acid structure
Eschenmoser, A. (1999) · Science · doi:10.1126/science.284.5423.2118 · Cited by 611 · see citing works
Prebiotic Ribose Synthesis: A Critical Analysis
Shapiro, R. (1988) · Origins of life and evolution of the biosphere · doi:10.1007/bf01808782 · Cited by 276 · see citing works
Selective Derivatization and Sequestration of Ribose from a Prebiotic Mix
Springsteen, G., & Joyce, G. F. (2004) · Journal of the American Chemical Society · doi:10.1021/ja0483692 · Cited by 122 · see citing works
Eschenmoser, A. (2007) · Chemistry & Biodiversity · doi:10.1002/cbdv.200790050 · Cited by 115 · see citing works
Schrum, J. P., Ricardo, A., Krishnamurthy, M., Blain, J. C., & Szostak, J. W. (2009) · Journal of the American Chemical Society · doi:10.1021/ja906557v · Cited by 103 · see citing works
Self-citationDirect Assembly of Nucleoside Precursors from Two‐ and Three‐Carbon Units
Anastasi, C., Crowe, M. A., Powner, M. W., & Sutherland, J. D. (2006) · Angewandte Chemie International Edition · doi:10.1002/anie.200601267 · Cited by 86 · see citing works
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Flagged first, then by citations
Research works printed but not linked: 22
- Powner M. W.; Gerland B.; Sutherland J. D. Nature 2009, 495, 239. 19444213
- Gesteland R. F., Cech T. R., Atkins J. F., Eds. The RNA World, 2nd ed.; Cold Spring Harbor Laboratory Press: Plainview, NY, 1999.
- Echenmoser A. Science 1999, 284, 2118. 10381870
- a Oro J. Biochem. Biophys. Res. Commun. 1960, 2, 407. b Oro A.; Kimball P. Arch. Biochem. Biophys. 1962, 96, 293. 14482339 c Lowe C. U.; Rees M. W.; Markham R. Nature 1963, 199, 219. 14076677 d Ferris J. P.; Orgel L. E. J. Am. Chem. Soc. 1966, 88, 3829. 5916373 e Ferris J. P.; Orgel L. E. J. Am. Chem. Soc. 1966, 88, 1074. 5916373 f Sanchez R. A.; Ferris J. P.; Orgel L. E. J. Mol. Biol. 1967, 30, 223. 4297187 g Orgel L. E.; Lohrmann R. Acc. Chem. Res. 1974, 7, 368. h Ferris J. P.; Hagan W. J. Jr. Tetrahedron 1984, 40, 1093. 11541961
- Fuller W. D.; Sanchez R. A.; Orgel L. E. J. Mol. Evol. 1972, 1, 249. 4681226
- Anastasi C.; Buchet F. F.; Crowe M. A.; Parkes A. L.; Powner M. W.; Smith J. M.; Sutherland J. D. Chem. Biodiv. 2007, 4, 721. 17443885
- a Speck J. C. Jr. Adv. Carbohydr. Chem. Biochem. 1958, 13, 63. 13605969 b Mizuno T.; Weiss A. H. Adv. Carbohydr. Chem. Biochem. 1974, 29, 173. c Shapiro R. Origins Life Evol. Biospheres 1988, 18, 71. 2453009 d Müller D.; Pitsch S.; Kittaka A.; Wagner E.; Wintner C. E.; Eschenmoser A. Helv. Chim. Acta 1990, 73, 1410. e Larralde R.; Robertson M. P.; Miller S. L. Proc. Natl. Acad. Sci. U.S.A 1995, 92, 8158. 7667262 PMC41115 f Pizzarello S.; Weber A. L. Science 2004, 303, 1151. 14976304 g Springsteen G.; Joyce G. F. J. Am. Chem. Soc. 2004, 126, 9578. 15291561 h Ricardo A.; Carrigan M. A.; Olcott A. N.; Benner S. A. Science 2004, 303, 196. 14716004 i Córdova A. C.; Ibrahem I.; Casas J.; Sundén H.; Engqvist M.; Reyes E. Chem. Eur. J. 2005, 11, 4772. 15929141 j Kofoed J.; Reymond J.-L.; Darbre T. Org. Biomol. Chem. 2005, 3, 1850. 15889167
- a Strecker A. Liebigs Ann. Chem. 1850, 75, 27. b Strecker A. Liebigs Ann. Chem. 1854, 91, 349. c Miller S. L.; Urey H. C. Science 1959, 130, 245. 13668555 d Mullen L. B.; Sutherland J. D. Angew. Chem., Int. Ed. 2007, 46, 8063. 17854015
- a Schwartz A. W.; Goverde M. J. Mol. Evol. 1982, 18, 351. 6288968 b Eschenmoser A. Chem. Biodiv. 2007, 4, 554. 17443871
- Koch K.; Schweizer W. B.; Eschenmoser A. Chem. Biodiv. 2007, 4, 541. 17443870
- Intramolecular trapping of iminium ion 9 can presumably occur reversibly, but it is thought that 6-exo-trig reaction dominates for thermodynamic reasons. a See ref (1). b Powner M. W.; Sutherland J. D. Angew. Chem., Int. Ed. 2010, 49, 4641. 20491113
- a Schöning K.; Scholz P.; Guntha S.; Wu X.; Krishnamurthy R.; Eschenmoser A. Science 2000, 290, 1347. 11082060 b Schöning K.; Scholz P.; Wu X.; Guntha S.; Delgado G.; Krishnamurthy R.; Eschenmoser A. Helv. Chim. Acta 2002, 85, 4111. c Wu X.; Guntha S.; Ferencic M.; Krishnamurthy R.; Eschenmoser A. Org. Lett. 2002, 4, 1279. 11950342
- Anastasi C.; Crowe M. A.; Powner M. W.; Sutherland J. D. Angew. Chem., Int. Ed. 2006, 45, 6176. 16917794
- Saewan N.; Crowe M. A.; Helliwell M.; Raftery J.; Chantranpromma K.; Sutherland J. D. Chem. Biodiv. 2005, 2, 66. 17191920
- Though it is possible that the reaction of formaldehyde and 5 is reversible, 41 was not observed to undergo retro-aldol decomposition during synthesis from glyceraldehyde and 4 or upon heating in aqueous solution. Furthermore, it should be noted that neither intramolecular cyclization nor aromatization is required for product trapping to prevent retro-aldol reaction. The reversible interchange of pentose aminooxazolines and their respective oxazoles with open-chain hydrates has been observed in the absence of retro-aldol reaction (see ref (11b)). The reaction of 4-methoxybenzaldehyde and 2-amino-4-methyloxazole has been reported (albeit in hot toluene) wherein, due to the lack of a suitably positioned nucleophilic moiety, cyclization to an aminooxazoline cannot occur (ref (19a)). Finally, in aqueous solution, the reaction of glyceraldehyde-2-phosphate and 5 furnishes a diastereomeric mixture of open-chain hydrates. Despite the potential for 6-exo-trig hydroxyl cyclization to afford pyranosyl−aminooxazoline products, heating these hydrate species leads to aromatization not cyclization or retro-aldol decomposition. a Khan H. R.; Crank G. Tetrahedron Lett. 1987, 28, 3381. b Anastasi C.; Buchet F. F.; Crowe M. A.; Helliwell M.; Raftery J.; Sutherland J. D. Chem. Eur. J. 2008, 14, 2375. 18203227
- a Thanassi J. W. J. Org. Chem. 1975, 40, 2678. b Pascal R.; Taillades J.; Commeyras A. Bull Soc. Chim. Fr. 1978, II, 177. c Pascal R.; Taillades J.; Commeyras A. Tetrahedron 1979, 34, 2275. d Rousset A.; Lasperas M.; Taillades J.; Commeyras A. Tetrahedron 1980, 36, 2649. e Pascal R.; Taillades J.; Commeyras A. Tetrahedron 1980, 36, 2999. f Edward J. T.; Chubb F. L. Proc. R. Ir. Acad. 1983, 83, 57. g Pascal R. Eur. J. Org. Chem. 2003, 1813.
- Although we did not observe N3′ cyanovinylation, within the limits of NMR spectroscopy, we did detect on the order of 5−8% cytidine modification when tetrahydroimidazo[1′,3′]-C2′′-aminooxazolo[1′,2′]-pyrimidines were treated with an excess of cyanoacetylene. 48 (R = CN, R′ = CH2OH) was isolated from the reaction of 17 with cyanoacetylene by precipitation from concentrated aqueous solution. See Supporting Information, Figure S35, for comparative 1H−1H COSY analysis. a Furukawa Y.; Miyashita O.; Honjo M. Chem. Pharm. Bull. 1974, 22, 2552. b Crowe M. A.; Sutherland J. D. ChemBioChem 2006, 7, 951. 16642527
- a Powner M. W.; Sutherland J. D. ChemBioChem 2008, 9, 2386. 18798212 b Powner M. W.; Anastasi C.; Crowe M. A.; Parkes A. L.; Raftery J.; Sutherland J. D. ChemBioChem 2007, 8, 1170. 17549787
- a Prior J. J.; Santi D. V. J. Biol. Chem. 1984, 259, 2429. 6546573 b McCann J. A. B.; Berti P. J. J. Am. Chem. Soc. 2007, 129, 7055. 17497857
- Ace K.; Sutherland J. D. Chem. Biodiv. 2004, 1, 1678. 17191808
- a Nielsen P. E.; Egholm M.; Berg R. H.; Buchardt O. Science 1991, 254, 1497. 1962210 b Orgel L. E. Nature 1992, 358, 203. 1630488 c Koga M.; Abe K.; Ozaki S.; Schneller S. W. Nucleic Acids Symp. Ser. 1994, 31, 65. d Herddewijn P. Angew. Chem., Int. Ed. 2001, 40, 2249. e Allan P. S.; Wilds C. J.; Wawrzak Z.; Krishnamurthy R.; Eschenmoser A.; Egli M. Angew. Chem., Int. Ed. 2003, 42, 5893. 14673929 f Zhang L.; Peritz A. E.; Meggers E. J. Am. Chem. Soc. 2005, 127, 417. 15783191 g Ichida J. K.; Horhota A.; Zpu K.; McLaughlin L. W.; Szostak J. W. Nucleic Acids Res. 2005, 33, 5219. 16157867 PMC1214552 h Mittapalli G. K.; Osornio Y. M.; Guerrero M. A.; Reddy K. R.; Krishnamurthy R.; Eschenmoser A. Angew. Chem., Int. Ed. 2007, 46, 2478. 17111453 i Mittapalli G. K.; Reddy K. R.; Xiong H.; Munoz O.; Han B.; De Riccardis F.; Krishnamurthy R.; Eschenmoser A. Angew. Chem., Int. Ed. 2007, 351, 2470. 17111452 j Schrum J. P.; Ricardo A.; Krishnamurthy M.; Blain J. C.; Szostak J. W. J. Am. Chem. Soc. 2009, 131, 14560. 19757789 PMC2759813
- Choudhary A.; Kamer K. J.; Powner M. W.; Sutherland J. D.; Raines R. T. ACS Chem. Biol. 2010, 16, 655. 20499895 PMC2912435
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- Authors
- Powner, M. W., Sutherland, J. D., & Szostak, J. W.
- Affiliations
- Howard Hughes Medical Institute (US)
- Corresponding author
- Powner, Matthew W.
- Venue
- Journal of the American Chemical Society
- Publisher
- American Chemical Society (ACS)
- Published
- 2010-11-02
- Volume
- 132
- Issue
- 46
- Pages
- 16677-16688
- ISSN
- 0002-7863 (ISSN-L)
- 1520-5126
- PMC
- PMC2984373
- OpenAlex
- W1992304492
- Cited by
- 150
- References
- 6
- Citations by year
- 2026: 4 · 2025: 2 · 2024: 3 · 2023: 4 · 2022: 10 · 2021: 6 · 2020: 8 · 2019: 8 · 2018: 12 · 2017: 15 · 2016: 8 · 2015: 7 · 2014: 19 · 2013: 17 · 2012: 15
- FWCI
- 7.68
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Journal of the American Chemical Society (publishedVersion, other-oa)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- UCL Discovery (University College London) (submittedVersion)
- Funders
- Howard Hughes Medical Institute
- Topics
- Physical Sciences › Physics and Astronomy › Astronomy and Astrophysics › Origins and Evolution of Life
- Physical Sciences › Chemistry › Organic Chemistry › Multicomponent Synthesis of Heterocycles
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA and protein synthesis mechanisms
- Keywords
- purine nucleotide synthesis, prebiotic chemistry, multicomponent reactions, one-pot synthesis, aqueous synthesis, 2-aminooxazole, pyrimidine nucleotides, RNA world
- MeSH terms
- Hydrogen-Ion Concentration, Purines, Pyrimidines, Water, Molecular Structure
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