Cited by 75Alzheimer's disease research and treatmentsElectron Spin Resonance StudiesProtein Structure and Dynamics

Conformational basis for asymmetric seeding barrier in filaments of three- and four-repeat tau

Open access
Siddiqua, Ayisha, Luo, Yin, Meyer, Virginia, Swanson, Michael A., Yu, Xiang, Wei, Guanghong, Zheng, Jie, Eaton, Gareth R. +4 more·2012·Journal of the American Chemical Society

Abstract

Tau pathology in Alzheimer's disease is intimately linked to the deposition of proteinacious filaments, which akin to infectious prions, have been proposed to spread via seeded conversion. Here we use double electron-electron resonance (DEER) spectroscopy in combination with extensive computational analysis to show that filaments of three- (3R) and four-repeat (4R) tau are conformationally distinct. Distance measurements between spin labels in the third repeat, reveal tau amyloid filaments as ensembles of known β-strand-turn-β-strand U-turn motifs. Whereas filaments seeded with 3R tau are structurally homogeneous, filaments seeded with 4R tau are heterogeneous, composed of at least three distinct conformers. These findings establish a molecular basis for the seeding barrier between different tau isoforms and offer a new powerful approach for investigating the composition and dynamics of amyloid fibril ensembles.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1021/ja303498q

Cites

9 of 9 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

  • Fibrils formed in the presence of heparin are heterogeneous ensembles.

    “fibrils formed in the presence of heparin are heterogeneous ensembles (51, 52)”

    From MAP2 caps tau fibrils and inhibits aggregation (2023) · cites this paper as [52]

    The Experimental Procedures (Sample Preparation for DEER Experiments; page unavailable) state that the studied filaments were prepared with heparin. The Results (Tau Filaments Are Heterogeneous; page unavailable) identify multiple conformers in K18 filaments, but also report that filaments seeded with K19 were structurally homogeneous. The claim therefore overgeneralizes the finding to heparin-formed fibrils as a whole. (LLM, conf=0.87)

    Experimental — accuracy not yet measured
  • The fibrils employed in the current study are known to have different folds.

    “The fibrils that were employed in the current study are known to have different folds.”

    From MAP2 caps tau fibrils and inhibits aggregation (2023) · cites this paper as [52]

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Cites

Flagged first, then by citations

Research works printed but not linked: 62

  1. Goedert M.; Spillantini M. G. J. Mol. Neurosci. 2011, 45, 425– 31. 21785996
  2. Lee V. M.; Goedert M.; Trojanowski J. Q. Annu. Rev. Neurosci. 2001, 24, 1121– 59. 11520930
  3. Siddiqua A.; Margittai M. J. Biol. Chem. 2010, 285, 37920– 6. 20921227 PMC2988394
  4. Goedert M.; Spillantini M. G.; Cairns N. J.; Crowther R. A. Neuron 1992, 8, 159– 68. 1530909
  5. Buee L.; Delacourte A. Brain Pathol. 1999, 9, 681– 93. 10517507 PMC8098140
  6. Novak M.; Kabat J.; Wischik C. M. Embo J. 1993, 12, 365– 70. 7679073 PMC413214
  7. Wischik C. M.; Novak M.; Edwards P. C.; Klug A.; Tichelaar W.; Crowther R. A. Proc. Natl. Acad. Sci. U.S.A. 1988, 85, 4884– 8. 2455299 PMC280541
  8. Goedert M.; Jakes R.; Spillantini M. G.; Hasegawa M.; Smith M. J.; Crowther R. A. Nature 1996, 383, 550– 3. 8849730
  9. Barghorn S.; Mandelkow E. Biochemistry 2002, 41, 14885– 96. 12475237
  10. Friedhoff P.; von Bergen M.; Mandelkow E. M.; Davies P.; Mandelkow E. Proc. Natl. Acad. Sci. U.S.A. 1998, 95, 15712– 7. 9861035 PMC28109
  11. Jarrett J. T.; Lansbury P. T. Jr. Cell 1993, 73, 1055– 8. 8513491
  12. von Bergen M.; Barghorn S.; Li L.; Marx A.; Biernat J.; Mandelkow E. M.; Mandelkow E. J. Biol. Chem. 2001, 276, 48165– 74. 11606569
  13. Berriman J.; Serpell L. C.; Oberg K. A.; Fink A. L.; Goedert M.; Crowther R. A. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 9034– 8. 12853572 PMC166433
  14. Sunde M.; Blake C. Adv. Protein Chem. 1997, 50, 123– 59. 9338080
  15. Wille H.; Bian W.; McDonald M.; Kendall A.; Colby D. W.; Bloch L.; Ollesch J.; Borovinskiy A. L.; Cohen F. E.; Prusiner S. B.; Stubbs G. Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 16990– 5. 19805070 PMC2761340
  16. Eichner T.; Radford S. E. Mol. Cell 2011, 43, 8– 18. 21726806
  17. Miller Y.; Ma B.; Nussinov R. Chem. Rev. 2010, 110, 4820– 38. 20402519 PMC2920034
  18. Collinge J.; Clarke A. R. Science 2007, 318, 930– 6. 17991853
  19. Frost B.; Jacks R. L.; Diamond M. I. J. Biol. Chem. 2009, 284, 12845– 52. 19282288 PMC2676015
  20. Kfoury N.; Holmes B. B.; Jiang H.; Holtzman D. M.; Diamond M. I. J. Biol. Chem. 2012, 287, 19440– 51. 22461630 PMC3365982
  21. Clavaguera F.; Bolmont T.; Crowther R. A.; Abramowski D.; Frank S.; Probst A.; Fraser G.; Stalder A. K.; Beibel M.; Staufenbiel M.; Jucker M.; Goedert M.; Tolnay M. Nat. Cell Biol. 2009, 11, 909– 13. 19503072 PMC2726961
  22. Guo J. L.; Lee V. M. J. Biol. Chem. 2011, 286, 15317– 31. 21372138 PMC3083182
  23. Miller Y.; Ma B. Y.; Nussinov R. Biochemistry 2011, 50, 5172– 5181. 21506544 PMC3109766
  24. Dinkel P. D.; Siddiqua A.; Huynh H.; Shah M.; Margittai M. Biochemistry 2011, 50, 4330– 6. 21510682
  25. Milov A. D.; Salikhov K. M.; Shchirov M. D. Sov. Phys. Solid State 1981, 23, 565– 569.
  26. Jeschke G.; Pannier M.; Spiess H. W. Biol. Magn. Reson. 2000, 19, 493– 512.
  27. Swanson M. A.; Kathirvelu V.; Majtan T.; Frerman F. E.; Eaton G. R.; Eaton S. S. Protein Sci. 2011, 20, 610– 20. 21308847 PMC3064839
  28. Fajer P. G.; Brown L.; Song L. Biol. Magn. Reson. 2007, 27, 95– 128.
  29. Jeschke G.; Chechnik V.; Ionita P.; Godt A.; Zimmermann H.; Banham J.; Timmel C. R.; Hilger D.; Jung H. Appl. Magn. Reson. 2006, 30, 473– 498.
  30. Kale L.; Skeel R.; Bhandarkar M.; Brunner R.; Gursoy A.; Krawetz N.; Phillips J.; Shinozaki A.; Varadarajan K.; Schulten K. J. Comput. Phys. 1999, 151, 283– 312.
  31. Zheng J.; Ma B. Y.; Chang Y.; Nussinov R. Front. Biosci. 2008, 13, 3919– 3930. 18508486 PMC6413880
  32. Bedrood S.; Li Y.; Isas J. M.; Hegde B. G.; Baxa U.; Haworth I. S.; Langen R. J. Biol. Chem. 2012, 287, 5235– 41. 22187437 PMC3285303
  33. Karyagina I.; Becker S.; Giller K.; Riedel D.; Jovin T. M.; Griesinger C.; Bennati M. Biophys. J. 2011, 101, L1– 3. 21723808 PMC3127190
  34. Margittai M.; Langen R. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 10278– 83. 15240881 PMC478563
  35. Margittai M.; Langen R. Q. Rev. Biophys. 2008, 41, 265– 97. 19079806
  36. Ghimire H.; McCarrick R. M.; Budil D. E.; Lorigan G. A. Biochemistry 2009, 48, 5782– 4. 19476379 PMC2735847
  37. Zou P.; Mchaourab H. S. Biophys. J. 2010, 98, L18– 20. 20303847 PMC2849076
  38. Chiang Y. W.; Borbat P. P.; Freed J. H. J. Magn. Reson. 2005, 172, 279– 295. 15649755
  39. Margittai M.; Langen R. J. Biol. Chem. 2006, 281, 37820– 7. 17023423
  40. Yu X.; Luo Y.; Dinkel P.; Zheng J.; Wei G.; Margittai M.; Nussinov R.; Ma B. J. Biol. Chem. 2012, 287, 14950– 14959. 22393063 PMC3340261
  41. Polyhach Y.; Bordignon E.; Jeschke G. Phys. Chem. Chem. Phys. 2011, 13, 2356– 2366. 21116569
  42. Frost B.; Ollesch J.; Wille H.; Diamond M. I. J. Biol. Chem. 2009, 284, 3546– 51. 19010781 PMC2635036
  43. Liu L.; Drouet V.; Wu J. W.; Witter M. P.; Small S. A.; Clelland C.; Duff K. PLoS One 2012, 7, e31302. 22312444 PMC3270029
  44. de Calignon A.; Polydoro M.; Suarez-Calvet M.; William C.; Adamowicz D. H.; Kopeikina K. J.; Pitstick R.; Sahara N.; Ashe K. H.; Carlson G. A.; Spires-Jones T. L.; Hyman B. T. Neuron 2012, 73, 685– 97. 22365544 PMC3292759
  45. Bessen R. A.; Marsh R. F. J. Virol. 1994, 68, 7859– 68. 7966576 PMC237248
  46. Telling G. C.; Parchi P.; DeArmond S. J.; Cortelli P.; Montagna P.; Gabizon R.; Mastrianni J.; Lugaresi E.; Gambetti P.; Prusiner S. B. Science 1996, 274, 2079– 82. 8953038
  47. Peretz D.; Scott M. R.; Groth D.; Williamson R. A.; Burton D. R.; Cohen F. E.; Prusiner S. B. Protein Sci. 2001, 10, 854– 63. 11274476 PMC2373967
  48. Tanaka M.; Chien P.; Naber N.; Cooke R.; Weissman J. S. Nature 2004, 428, 323– 8. 15029196
  49. King C. Y.; Diaz-Avalos R. Nature 2004, 428, 319– 23. 15029195
  50. Brachmann A.; Baxa U.; Wickner R. B. Embo J. 2005, 24, 3082– 92. 16096644 PMC1201353
  51. Petkova A. T.; Leapman R. D.; Guo Z.; Yau W. M.; Mattson M. P.; Tycko R. Science 2005, 307, 262– 5. 15653506
  52. Heise H.; Hoyer W.; Becker S.; Andronesi O. C.; Riedel D.; Baldus M. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 15871– 6. 16247008 PMC1276071
  53. Prusiner S. B.; Scott M.; Foster D.; Pan K. M.; Groth D.; Mirenda C.; Torchia M.; Yang S. L.; Serban D.; Carlson G. A.; Hoppe P. C.; Westaway D.; DeArmond S. J. Cell 1990, 63, 673– 86. 1977523
  54. Sigurdson C. J.; Nilsson K. P.; Hornemann S.; Manco G.; Fernandez-Borges N.; Schwarz P.; Castilla J.; Wuthrich K.; Aguzzi A. J. Clin. Invest. 2010, 120, 2590– 9. 20551516 PMC2898603
  55. Jones E. M.; Surewicz W. K. Cell 2005, 121, 63– 72. 15820679
  56. Weissmann C.; Li J.; Mahal S. P.; Browning S. EMBO Rep. 2011, 12, 1109– 17. 21997298 PMC3207107
  57. Aoyagi H.; Hasegawa M.; Tamaoka A. J. Biol. Chem. 2007, 282, 20309– 18. 17526496
  58. Nonaka T.; Watanabe S. T.; Iwatsubo T.; Hasegawa M. J. Biol. Chem. 2010, 285, 34885– 98. 20805224 PMC2966103
  59. Collinge J.; Sidle K. C.; Meads J.; Ironside J.; Hill A. F. Nature 1996, 383, 685– 90. 8878476
  60. Vanik D. L.; Surewicz K. A.; Surewicz W. K. Mol. Cell 2004, 14, 139– 45. 15068810
  61. Wickner R. B.; Edskes H. K.; Ross E. D.; Pierce M. M.; Baxa U.; Brachmann A.; Shewmaker F. Annu. Rev. Genet. 2004, 38, 681– 707. 15355224
  62. Li J.; Browning S.; Mahal S. P.; Oelschlegel A. M.; Weissmann C. Science 2010, 327, 869– 72. 20044542 PMC2848070

Cited by

Sorted by citations

Authors
Siddiqua, A., Luo, Y., Meyer, V., Swanson, M. A., Yu, X., Wei, G., Zheng, J., Eaton, G. R., Ma, B., Nussinov, R., Eaton, S. S., & Margittai, M.
Affiliations
  • University of Denver (US)
  • Fudan University (CN)
  • University of Akron (US)
  • Frederick National Laboratory for Cancer Research (US)
  • Tel Aviv University (IL)
Corresponding author
Margittai, Martin
Venue
Journal of the American Chemical Society
Published
2012-06-12
Volume
134
Issue
24
Pages
10271-10278
ISSN
  • 0002-7863 (ISSN-L)
  • 1520-5126
OpenAlex
W2014858798
Cited by
75
References
9
Citations by year
2026: 2 · 2025: 2 · 2024: 5 · 2023: 1 · 2022: 4 · 2021: 5 · 2020: 2 · 2019: 8 · 2018: 6 · 2017: 3 · 2016: 10 · 2015: 7 · 2014: 11 · 2013: 9
FWCI
5.79
Type
journal article
Language
en
Open access
Locations
  • Journal of the American Chemical Society (publishedVersion, other-oa)
  • Europe PMC (PubMed Central) (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
  • National Cancer Institute
  • National Science Foundation
  • National Institute of Neurological Disorders and Stroke
Topics
  • Health Sciences › Medicine › Physiology › Alzheimer's disease research and treatments
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Biophysics › Electron Spin Resonance Studies
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Structure and Dynamics
Keywords
tau protein, tau isoforms, four-repeat tau, amyloid fibrils, conformational heterogeneity, Alzheimer's disease
MeSH terms
Alzheimer Disease, Amyloid, Humans, Models, Molecular, Spectrum Analysis, tau Proteins, Protein Structure, Secondary, Protein Isoforms, Repetitive Sequences, Amino Acid

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review