Cited by 84Monoclonal and Polyclonal Antibodies ResearchGlycosylation and Glycoproteins ResearchCarbohydrate Chemistry and Synthesis

Engineering hydrophobic protein-carbohydrate interactions to fine-tune monoclonal antibodies

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Yu, Xiaojie, Baruah, Kavitha, Harvey, David J., Vasiljevic, Snezana, Alonzi, Dominic S., Song, Byeong-Doo, Higgins, Matthew K., Bowden, Thomas A. +2 more·2013·Journal of the American Chemical Society

Abstract

Biologically active conformations of the IgG1 Fc homodimer are maintained by multiple hydrophobic interactions between the protein surface and the N-glycan. The Fc glycan modulates biological effector functions, including antibody-dependent cellular cytotoxicity (ADCC) which is mediated in part through the activatory Fc receptor, FcγRIIIA. Consistent with previous reports, we found that site-directed mutations disrupting the protein-carbohydrate interface (F241A, F243A, V262E, and V264E) increased galactosylation and sialylation of the Fc and, concomitantly, reduced the affinity for FcγRIIIA. We rationalized this effect by crystallographic analysis of the IgG1 Fc F241A mutant, determined here to a resolution of 1.9 Å, which revealed localized destabilization of this glycan-protein interface. Given that sialylation of Fc glycans decreases ADCC, one explanation for the effect of these mutants on FcγRIIIA binding is their increased sialylation. However, a glycan-engineered IgG1 with hypergalactosylated and hypersialylated glycans exhibited unchanged binding affinity to FcγRIIIA. Moreover, when we expressed these mutants as a chemically uniform (Man5GlcNAc2) glycoform, the individual effect of each mutation on FcγRIIIA affinity was preserved. This effect was broadly recapitulated for other Fc receptors (FcγRI, FcγRIIA, FcγRIIB, and FcγRIIIB). These data indicate that destabilization of the glycan-protein interactions, rather than increased galactosylation and sialylation, modifies the Fc conformation(s) relevant for FcγR binding. Engineering of the protein-carbohydrate interface thus provides an independent parameter in the engineering of Fc effector functions and a route to the synthesis of new classes of Fc domain with novel combinations of affinities for activatory and inhibitory Fc receptors.

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  • CHO-expressed IgG1-Fc with four mutations (F241A/F243A/V262E/V264E) has a more open conformation, which increased accessibility and processing by galactosyl- and sialyltransferases.

    “CHO-expressed IgG1-Fc with four mutations (F241A/F243A/V262E/V264E) has a more open conformation, which increased accessibility and processing by galactosyl- and sialyltransferases [11].”

    From Glycoengineering Chinese hamster ovary cells: a short history (2021) · cites this paper as [11]

    The Abstract and Results and Discussion report increased galactosylation and sialylation for the listed interface mutations, and discuss greater glycan accessibility to glycosyltransferases. But the HPLC Analysis section describes separate mutants expressed in HEK cells, not a four-mutation IgG1-Fc expressed in CHO cells. The proposed shift toward a more accessible conformation is also presented as a possibility, not an established structural finding for that construct; page numbers are unavailable in our copy. (LLM, conf=0.90)

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Research works printed but not linked: 67

  1. Nimmerjahn F.; Ravetch J. V. Annu. Rev. Immunol. 2008, 26, 513. 18370923
  2. Ravetch J. V.; Bolland S. Annu. Rev. Immunol. 2001, 19, 275. 11244038
  3. Krapp S.; Mimura Y.; Jefferis R.; Huber R.; Sondermann P. J. Mol. Biol. 2003, 325, 979. 12527303
  4. Deisenhofer J. Biochemistry 1981, 20, 2361. 7236608
  5. Borrok M. J.; Jung S. T.; Kang T. H.; Monzingo A. F.; Georgiou G. ACS Chem. Biol. 2012, 7, 1596. 22747430 PMC3448853
  6. Girardi E.; Holdom M. D.; Davies A. M.; Sutton B. J.; Beavil A. J. Biochem. J. 2009, 417, 77. 18764781
  7. Nose M.; Wigzell H. Proc. Natl. Acad. Sci. U.S.A. 1983, 80, 6632. 6579549 PMC391224
  8. Sazinsky S. L.; Ott R. G.; Silver N. W.; Tidor B.; Ravetch J. V.; Wittrup K. D. Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 20167. 19074274 PMC2629253
  9. Niwa R.; Shoji-Hosaka E.; Sakurada M.; Shinkawa T.; Uchida K.; Nakamura K.; Matsushima K.; Ueda R.; Hanai N.; Shitara K. Cancer Res. 2004, 64, 2127. 15026353
  10. Mori K.; Iida S.; Yamane-Ohnuki N.; Kanda Y.; Kuni-Kamochi R.; Nakano R.; Imai-Nishiya H.; Okazaki A.; Shinkawa T.; Natsume A.; Niwa R.; Shitara K.; Satoh M. Cytotechnology 2007, 55, 109. 19003000 PMC2104554
  11. Scallon B. J.; Tam S. H.; McCarthy S. G.; Cai A. N.; Raju T. S. Mol. Immunol. 2007, 44, 1524. 17045339
  12. Ferrara C.; Grau S.; Jäger C.; Sondermann P.; Brünker P.; Waldhauer I.; Hennig M.; Ruf A.; Rufer A. C.; Stihle M.; Umaña P.; Benz J. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12669. 21768335 PMC3150898
  13. Anthony R. M.; Ravetch J. V. J. Clin. Immunol. 2010, 30 Suppl 1 S9. 20480216
  14. Ferrara C.; Stuart F.; Sondermann P.; Brunker P.; Umana P. J. Biol. Chem. 2006, 281, 5032. 16330541
  15. Jefferis R. Nat. Rev. Drug discovery 2009, 8, 226. 19247305
  16. Niwa R.; Natsume A.; Uehara A.; Wakitani M.; Iida S.; Uchida K.; Satoh M.; Shitara K. J. Immunol. Methods 2005, 306, 151. 16219319
  17. Forthal D. N.; Gach J. S.; Landucci G.; Jez J.; Strasser R.; Kunert R.; Steinkellner H. J. Immunol. 2010, 185, 6876. 21041724
  18. Matsumiya S.; Yamaguchi Y.; Saito J.; Nagano M.; Sasakawa H.; Otaki S.; Satoh M.; Shitara K.; Kato K. J. Mol. Biol. 2007, 368, 767. 17368483
  19. Radaev S.; Motyka S.; Fridman W. H.; Sautes-Fridman C.; Sun P. D. J. Biol. Chem. 2001, 276, 16469. 11297532
  20. Bowden T. A.; Baruah K.; Coles C. H.; Harvey D. J.; Yu X.; Song B. D.; Stuart D. I.; Aricescu A. R.; Scanlan C. N.; Jones E. Y.; Crispin M. J. Am. Chem. Soc. 2012, 134, 17554. 23025485 PMC3593610
  21. Crispin M.; Bowden T. A.; Coles C. H.; Harlos K.; Aricescu A. R.; Harvey D. J.; Stuart D. I.; Jones E. Y. J. Mol. Biol. 2009, 387, 1061. 19236877
  22. Feige M. J.; Nath S.; Catharino S. R.; Weinfurtner D.; Steinbacher S.; Buchner J. J. Mol. Biol. 2009, 391, 599. 19559712
  23. Baruah K.; Bowden T. A.; Krishna B. A.; Dwek R. A.; Crispin M.; Scanlan C. N. J. Mol. Biol. 2012, 420, 1. 22484364 PMC3437440
  24. Shields R. L.; Namenuk A. K.; Hong K.; Meng Y. G.; Rae J.; Briggs J.; Xie D.; Lai J.; Stadlen A.; Li B.; Fox J. A.; Presta L. G. J. Biol. Chem. 2001, 276, 6591. 11096108
  25. Chu S. Y.; Vostiar I.; Karki S.; Moore G. L.; Lazar G. A.; Pong E.; Joyce P. F.; Szymkowski D. E.; Desjarlais J. R. Mol. Immunol. 2008, 45, 3926. 18691763
  26. Zou G.; Ochiai H.; Huang W.; Yang Q.; Li C.; Wang L. X. J. Am. Chem. Soc. 2011, 133, 18975. 22004528 PMC3218234
  27. Kanda Y.; Yamada T.; Mori K.; Okazaki A.; Inoue M.; Kitajima-Miyama K.; Kuni-Kamochi R.; Nakano R.; Yano K.; Kakita S.; Shitara K.; Satoh M. Glycobiology 2007, 17, 104. 17012310
  28. Lund J.; Takahashi N.; Pound J. D.; Goodall M.; Jefferis R. J. Immunol. 1996, 157, 4963. 8943402
  29. Stewart R.; Thom G.; Levens M.; Guler-Gane G.; Holgate R.; Rudd P. M.; Webster C.; Jermutus L.; Lund J. Protein Eng. Des. Sel. 2011, 24, 671. 21596686
  30. Arnold J. N.; Wormald M. R.; Sim R. B.; Rudd P. M.; Dwek R. A. Annu. Rev. Immunol. 2007, 25, 21. 17029568
  31. Rudd P. M.; Dwek R. A. Crit. Rev. Biochem. Mol. Biol. 1997, 32, 1. 9063619
  32. Wormald M. R.; Rudd P. M.; Harvey D. J.; Chang S. C.; Scragg I. G.; Dwek R. A. Biochemistry 1997, 36, 1370. 9063885
  33. Barb A. W.; Prestegard J. H. Nat. Chem. Biol. 2011, 7, 147. 21258329 PMC3074608
  34. Barb A. W.; Meng L.; Gao Z.; Johnson R. W.; Moremen K. W.; Prestegard J. H. Biochemistry 2012, 51, 4618. 22574931 PMC3447994
  35. Voynov V.; Chennamsetty N.; Kayser V.; Helk B.; Forrer K.; Zhang H.; Fritsch C.; Heine H.; Trout B. L. PLoS One 2009, 4, e8425. 20037630 PMC2791859
  36. Jassal R.; Jenkins N.; Charlwood J.; Camilleri P.; Jefferis R.; Lund J. Biochem. Biophys. Res. Commun. 2001, 286, 243. 11500028
  37. Davis I. W.; Leaver-Fay A.; Chen V. B.; Block J. N.; Kapral G. J.; Wang X.; Murray L. W.; Arendall W. B. 3rd; Snoeyink J.; Richardson J. S.; Richardson D. C. Nucleic Acids Res. 2007, 35, W375. 17452350 PMC1933162
  38. Raju T. S. Curr. Opin. Immunol. 2008, 20, 471. 18606225
  39. Domon B.; Costello C. E. Glycoconj. J. 1988, 5, 397.
  40. Vliegenthart J. F. G.; Dorland L.; van Halbeek H. Adv. Carbohydr. Chem. Biochem. 1983, 41, 209.
  41. Dwek R. A.; Lellouch A. C.; Wormald M. R. J. Anat. 1995, 187 Pt 2 279. 7591992 PMC1167424
  42. Harvey D. J.; Merry A. H.; Royle L.; Campbell M. P.; Dwek R. A.; Rudd P. M. Proteomics 2009, 9, 3796. 19670245
  43. Kabsch W.; Sander C. Biopolymers 1983, 22, 2577. 6667333
  44. Reeves P. J.; Callewaert N.; Contreras R.; Khorana H. G. Proc. Natl. Acad. Sci. U.S.A. 2002, 99, 13419. 12370423 PMC129688
  45. Hua S.; Jeong H. N.; Dimapasoc L. M.; Kang I.; Han C.; Choi J. S.; Lebrilla C. B.; An H. J. Anal. Chem. 2013, 85, 4636. 23534819 PMC5636693
  46. Lin S. Y.; Chen Y. Y.; Fan Y. Y.; Lin C. W.; Chen S. T.; Wang A. H.; Khoo K. H. J. Proteome Res. 2008, 7, 3293. 18549263
  47. Crispin M.; Harvey D. J.; Chang V. T.; Yu C.; Aricescu A. R.; Jones E. Y.; Davis S. J.; Dwek R. A.; Rudd P. M. Glycobiology 2006, 16, 748. 16672288
  48. Ferrara C.; Grau S.; Jager C.; Sondermann P.; Brunker P.; Waldhauer I.; Hennig M.; Ruf A.; Rufer A. C.; Stihle M.; Umana P.; Benz J. Proc. Natl. Acad. Sci. U.S.A. 2011, 108, 12669. 21768335 PMC3150898
  49. Kaneko Y.; Nimmerjahn F.; Ravetch J. V. Science 2006, 313, 670. 16888140
  50. Lu J.; Ellsworth J. L.; Hamacher N.; Oak S. W.; Sun P. D. J. Biol. Chem. 2011, 286, 40608. 21965667 PMC3220521
  51. Iida S.; Misaka H.; Inoue M.; Shibata M.; Nakano R.; Yamane-Ohnuki N.; Wakitani M.; Yano K.; Shitara K.; Satoh M. Clin. Cancer Res. 2006, 12, 2879. 16675584
  52. Shields R. L.; Lai J.; Keck R.; O’Connell L. Y.; Hong K.; Meng Y. G.; Weikert S. H.; Presta L. G. J. Biol. Chem. 2002, 277, 26733. 11986321
  53. Dall’Acqua W. F.; Cook K. E.; Damschroder M. M.; Woods R. M.; Wu H. J. Immunol. 2006, 177, 1129. 16818770
  54. Horton H. M.; Bernett M. J.; Pong E.; Peipp M.; Karki S.; Chu S. Y.; Richards J. O.; Vostiar I.; Joyce P. F.; Repp R.; Desjarlais J. R.; Zhukovsky E. A. Cancer Res. 2008, 68, 8049. 18829563
  55. Crocker P. R. Curr. Opin. Pharmacol. 2005, 5, 431. 15955740
  56. Roben P.; Moore J. P.; Thali M.; Sodroski J.; Barbas C. F. 3rd; Burton D. R. J. Virol. 1994, 68, 4821. 7518527 PMC236421
  57. Ramasamy V.; Ramakrishnan B.; Boeggeman E.; Ratner D. M.; Seeberger P. H.; Qasba P. K. J. Mol. Biol. 2005, 353, 53. 16157350
  58. Aricescu A. R.; Lu W.; Jones E. Y. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2006, 62, 1243. 17001101
  59. Durocher Y.; Perret S.; Kamen A. Nucleic Acids Res. 2002, 30, E9. 11788735 PMC99848
  60. Chang V. T.; Crispin M.; Aricescu A. R.; Harvey D. J.; Nettleship J. E.; Fennelly J. A.; Yu C.; Boles K. S.; Evans E. J.; Stuart D. I.; Dwek R. A.; Jones E. Y.; Owens R. J.; Davis S. J. Structure 2007, 15, 267. 17355862 PMC1885966
  61. Küster B.; Wheeler S. F.; Hunter A. P.; Dwek R. A.; Harvey D. J. Anal. Biochem. 1997, 250, 82. 9234902
  62. Neville D. C.; Coquard V.; Priestman D. A.; te Vruchte D. J.; Sillence D. J.; Dwek R. A.; Platt F. M.; Butters T. D. Anal. Biochem. 2004, 331, 275. 15265733
  63. Otwinowski Z M. W. Processing of X-ray diffraction data collected in oscillation mode. In Methods in Enzymology; Carter C. W. Jr, Sweet R. M., Eds.; Academic Press: Waltham, MA, 1997; Vol. 276, p 306. 27754618
  64. McCoy A. J.; Gross-Kunstleve R. W.; Adams P. D.; Winn M. D.; Storoni L. C.; Read R. J. J. Appl. Crystallogr. 2007, 40, 658. 19461840 PMC2483472
  65. Emsley P.; Cowtan K. Acta Crystallogr., Sect. D: Biol. Crystallogr. 2004, 60, 2126. 15572765
  66. Collaborative Computational Project, Number 4. Acta Crystallogr., Sect. D: Biol. Crystallogr. 1994, 50, 760.15299374
  67. Davis I. W.; Leaver-Fay A.; Chen V. B.; Block J. N.; Kapral G. J.; Wang X.; Murray L. W.; Arendall W. B. 3rd; Snoeyink J.; Richardson J. S.; Richardson D. C. Nucleic Acids Res. 2007, 35, W375. 17452350 PMC1933162

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Authors
Yu, X., Baruah, K., Harvey, D. J., Vasiljevic, S., Alonzi, D. S., Song, B.-D., Higgins, M. K., Bowden, T. A., Scanlan, C. N., & Crispin, M.
Affiliations
  • University of Oxford (GB)
  • Scripps Korea Antibody Institute (KR)
  • Centre for Human Genetics (GB)
Corresponding author
Crispin, Max
Venue
Journal of the American Chemical Society
Published
2013-06-25
Volume
135
Issue
26
Pages
9723-9732
ISSN
  • 0002-7863 (ISSN-L)
  • 1520-5126
OpenAlex
W1975380390
Cited by
84
References
2
Citations by year
2026: 2 · 2025: 3 · 2024: 3 · 2023: 1 · 2022: 5 · 2021: 11 · 2020: 5 · 2019: 8 · 2018: 11 · 2017: 8 · 2016: 5 · 2015: 14 · 2014: 7 · 2013: 1
FWCI
6.99
Type
journal article
Language
en
Open access
Locations
  • Journal of the American Chemical Society (publishedVersion, other-oa)
  • Europe PMC (PubMed Central) (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
  • ePrints Soton (University of Southampton) (acceptedVersion)
Funders
Wellcome Trust (089026/Z/09/Z, 090532)
Topics
  • Health Sciences › Medicine › Radiology, Nuclear Medicine and Imaging › Monoclonal and Polyclonal Antibodies Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
  • Physical Sciences › Chemistry › Organic Chemistry › Carbohydrate Chemistry and Synthesis
Keywords
IgG1 Fc, carbohydrate-protein interactions, hydrophobic interactions, Fc glycan, FcγRIIIa, antibody-dependent cellular cytotoxicity, galactosylation, sialylation, glycan engineering, site-directed mutagenesis, Fc receptor binding, monoclonal antibodies, Fc effector functions
MeSH terms
Antibodies, Monoclonal, Immunoglobulin G, Immunoglobulin Fc Fragments, Models, Molecular, Polysaccharides, Protein Engineering, Crystallography, X-Ray, Hydrophobic and Hydrophilic Interactions

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