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Cited by 235

The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.

Development of an Empirical Force Field for Silica. Application to the Quartz−Water Interface

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Lopes, Pedro E. M., Murashov, Vladimir, Tazi, Mouhsine, Demchuk, Eugene, MacKerell, Alexander D.·2006·The Journal of Physical Chemistry B

Abstract

Interactions of pulverized crystalline silica with biological systems, including the lungs, cause cell damage, inflammation, and apoptosis. To allow computational atomistic modeling of these pathogenic processes, including interactions between silica surfaces and biological molecules, new parameters for quartz, compatible with the CHARMM empirical force field were developed. Parameters were optimized to reproduce the experimental geometry of alpha-quartz, ab initio vibrational spectra, and interactions between model compounds and water. The newly developed force field was used to study interactions of water with two singular surfaces of alpha-quartz, (011) and (100). Properties monitored and analyzed include the variation of the density of water molecules in the plane perpendicular to the surface, disruption of the water H-bond network upon adsorption, and space-time correlations of water oxygen atoms in terms of Van Hove self-correlation functions. The vibrational density of states spectra of water in confined compartments were also computed and compared with experimental neutron-scattering results. Both the attenuation and shifting to higher frequencies of the hindered translational peaks upon confinement are clearly reproduced by the model. However, an upshift of librational peaks under the conditions of model confinement still remains underrepresented at the current empirical level.

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Metadata

Authors
Lopes, P. E. M., Murashov, V., Tazi, M., Demchuk, E., & MacKerell, A. D.
Venue
The Journal of Physical Chemistry B
Published
2006-01-26
Volume
110
Issue
6
Pages
2782-2792
ISSN
  • 1520-5207 (ISSN-L)
  • 1520-6106
OpenAlex
W2018302267
Cited by
235
References
2
FWCI
4.43
Type
journal article
Language
en
Open access
green

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CoChat. (2026). Citation check: Development of an Empirical Force Field for Silica. Application to the Quartz−Water Interface. https://app.cochat.ai/papers/10.1021/jp055341j
The paper
Lopes, P. E. M., Murashov, V., Tazi, M., Demchuk, E., & MacKerell, A. D. (2006). Development of an Empirical Force Field for Silica. Application to the Quartz−Water Interface. The Journal of Physical Chemistry B. https://doi.org/10.1021/jp055341j

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Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.