The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
Photodynamics in Complex Environments:Ab Initio Multiple Spawning Quantum Mechanical/Molecular Mechanical Dynamics
Abstract
Our picture of reactions on electronically excited states has evolved considerably in recent years, due to advances in our understanding of points of degeneracy between different electronic states, termed "conical intersections" (CIs). CIs serve as funnels for population transfer between different electronic states, and play a central role in ultrafast photochemistry. Because most practical photochemistry occurs in solution and protein environments, it is important to understand the role complex environments play in directing excited-state dynamics generally, as well as specific environmental effects on CI geometries and energies. In order to model such effects, we employ the full multiple spawning (FMS) method for multistate quantum dynamics, together with hybrid quantum mechanical/molecular mechanical (QM/MM) potential energy surfaces using both semiempirical and ab initio QM methods. In this article, we present an overview of these methods, and a comparison of the excited-state dynamics of several biological chromophores in solvent and protein environments. Aqueous solvation increases the rate of quenching to the ground state for both the photoactive yellow protein (PYP) and green fluorescent protein (GFP) chromophores, apparently by energetic stabilization of their respective CIs. In contrast, solvation in methanol retards the quenching process of the retinal protonated Schiff base (RPSB), the rhodopsin chromophore. Protein environments serve to direct the excited-state dynamics, leading to higher quantum yields and enhanced reaction selectivity.
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Cites
The Retinal Conformation and its Environment in Rhodopsin in Light of a New 2.2 Å Crystal Structure
Okada, T., Sugihara, M., Bondar, A.-N., Elstner, M., Entel, P., & Buss, V. (2004) · Journal of Molecular Biology · doi:10.1016/j.jmb.2004.07.044 · Cited by 1,049
The First Step in Vision: Femtosecond Isomerization of Rhodopsin
Schoenlein, R. W., Peteanu, L. A., Mathies, R. A., & Shank, C. V. (1991) · Science · doi:10.1126/science.1925597 · Cited by 892
Retinal counterion switch in the photoactivation of the G protein-coupled receptor rhodopsin
Yan, E. C. Y., Kazmi, M. A., Ganim, Z., Hou, J.-M., Pan, D., Chang, B. S. W., Sakmar, T. P., & Mathies, R. A. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1531970100 · Cited by 197
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Crespo-Otero, R., & Barbatti, M. (2018) · Chemical Reviews · doi:10.1021/acs.chemrev.7b00577 · Cited by 733
Ab Initio Nonadiabatic Quantum Molecular Dynamics
Curchod, B. F. E., & Martínez, T. J. (2018) · Chemical Reviews · doi:10.1021/acs.chemrev.7b00423 · Cited by 709
Self-citationRichter, M., Marquetand, P., González-Vázquez, J., Sola, I., & González, L. (2011) · Journal of Chemical Theory and Computation · doi:10.1021/ct1007394 · Cited by 521
Brunk, E., & Rothlisberger, U. (2015) · Chemical Reviews · doi:10.1021/cr500628b · Cited by 494
Discovering chemistry with an ab initio nanoreactor
Wang, L.-P., Titov, A., McGibbon, R., Liu, F., Pande, V. S., & Martínez, T. J. (2014) · Nature Chemistry · doi:10.1038/nchem.2099 · Cited by 422
Self-citationNonadiabatic Events and Conical Intersections
Matsika, S., & Krause, P. (2011) · Annual Review of Physical Chemistry · doi:10.1146/annurev-physchem-032210-103450 · Cited by 309
Atomistic Study of the Long-Lived Quantum Coherences in the Fenna-Matthews-Olson Complex
Shim, S., Rebentrost, P., Valleau, S., & Aspuru-Guzik, A. (2012) · Biophysical Journal · doi:10.1016/j.bpj.2011.12.021 · Cited by 219
Multireference Electron Correlation Methods: Journeys along Potential Energy Surfaces
Park, J. W., Al-Saadon, R., MacLeod, M. K., Shiozaki, T., & Vlaisavljevich, B. (2020) · Chemical Reviews · doi:10.1021/acs.chemrev.9b00496 · Cited by 155
Metadata
- Authors
- Virshup, A. M., Punwong, C., Pogorelov, T. V., Lindquist, B. A., Ko, C., & Martínez, T. J.
- Venue
- The Journal of Physical Chemistry B
- Publisher
- American Chemical Society (ACS)
- Published
- 2008-12-17
- Volume
- 113
- Issue
- 11
- Pages
- 3280-3291
- ISSN
- 1520-5207 (ISSN-L)
- 1520-6106
- OpenAlex
- W2155402015
- Cited by
- 271
- References
- 3
- FWCI
- 13.40
- Type
- journal article
- Language
- en
- Open access
- closed
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