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DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI
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Cites
PROCHECK: a program to check the stereochemical quality of protein structures
Laskowski, R. A., MacArthur, M. W., Moss, D. S., & Thornton, J. M. (1993) · Journal of Applied Crystallography · doi:10.1107/s0021889892009944 · Cited by 24,581
Crystallographic analysis of the interaction of the glucocorticoid receptor with DNA
Luisi, B. F., Xu, W. X., Otwinowski, Z., Freedman, L. P., Yamamoto, K. R., & Sigler, P. B. (1991) · Nature · doi:10.1038/352497a0 · Cited by 1,503 · cited 1×
“Previous structural studies have visualized three DNA-binding protein families containing two bound zinc ions per protein subunit: steroid receptor”
Background
Research works printed but not linked: 25
- Belfort, M. & Roberts, R. Homing endonucleases — keeping the house in order. Nucleic Acids Res. 25, 3379–3388 (1997). · DOI · Paper page
- Belfort, M., Reaban, M. E., Coetzee, T. & Dalgaard, J. Z. Prokaryotic introns and inteins: a panoply of form and function. J. Bacteriol. 177, 3897–3903 (1995). · DOI
- Belfort, M. & Perlman, P. S. Mechanisms of intron mobility. J. Biol. Chem. 270, 30237–30240 (1995). · DOI · Paper page
- Cooper, A. A. & Stevens, T. H. Protein splicing: self-splicing of genetically mobile elements at the protein level. Trends Biochem. Sci. 20, 351–356 (1995). · DOI
- Ellison, E. L. & Vogt, V. M. Interaction of the intron-encoded mobility endonuclease I-PpoI with its target site. Mol. Cell. Biol. 13, 7531–7539 (1993).
- Muscarella, D. E. & Vogt, V. M. Amobile group I intron in the nuclear rDNA of Physarum polycephalum. Cell 56, 443–454 (1989). · DOI · Paper page
- Johansen, S., Embley, T. M. & Willassen, N. P. Afamily of nuclear homing endonucleases. Nucleic Acids Res. 21, 4405 (1993). · DOI
- Duan, X., Gimble, F. & Quiocho, F. Crystal structure of PI-SceI, a homing endonuclease with protein splicing activity. Cell 89, 555–564 (1997). · DOI · Paper page
- Heath, P. J., Stephens, K. M., Monnat, R. J. & Stoddard, B. L. The structure of I-CreI, a group I intron-encoded homing endonuclease. Nature Struct. Biol. 4, 468–476 (1997). · DOI
- South, T. L., Blake, P. R., Hare, D. R. & Summers, M. F. C-terminal retroviral-type zinc finger domain from the HIV-1 nucleocapsid protein is structurally similar to the N-terminal zinc finger domain. Biochemistry 30, 6342–6349 (1991). · DOI
- Marmorstein, R., Carey, M., Ptashne, M. & Harrison, S. C. DNA recognition by GAL4: structure of a protein–DNA complex. Nature 356, 408–414 (1992). · DOI · Paper page
- Everett, R. D. et al. Anovel arrangement of zinc-binding residues and secondary structure in the C3HC4 motif of an alpha herpes virus protein family. J. Mol. Biol. 234, 1038–1047 (1993). · doi:10.1006/jmbi.1993.1657
- Barlow, P. N., Luisi, B., Milner, A., Elliot, M. & Everett, R. Structure of the C3HC4domain by 1H-nuclear magnetic resonance spectroscopy. J. Mol. Biol. 237, 201–211 (1994). · DOI · Paper page
- Borden, K. L. B. et al. The solution structure of the RING finger domain from the acute promyelocytic leukaemia proto-oncoprotein PML. EMBO J. 14, 1532–1541 (1995). · DOI · Paper page
- Phillips, S. E. V. The β-ribbon DNA recognition motif. Ann. Rev. Biophys. Biomol. Struct. 23, 671–701 (1994). · doi:10.1146/annurev.bb.23.060194.003323
- Kim, J. L., Nikolov, D. B. & Burley, S. K. Co-crystal structure of TBP recognizing the minor groove of a TATA element. Nature 365, 520–527 (1993). · DOI · Paper page
- Kim, Y., Geiger, J. H., Hahn, S. & Sigler, P. B. Crystal structure of a yeast TBP–TATA-box complex. Nature 365, 512–520 (1993). · DOI · Paper page
- Schumacher, M. A., Choi, K. Y., Zalkin, H. & Brennan, R. G. Crystal structure of LacI member, PurR, bound to DNA: minor groove binding by α-helices. Science 266, 763–770 (1994). · DOI · Paper page
- Flick, K. E. et al. Crystallization and preliminary X-ray studies of I-PpoI: a nuclear, intron-encoded homing endonuclease from Physarum polycephalum. Protein Sci. 6, 1–4 (1997). · doi:10.1002/pro.5560060101
- Otwinowski, Z. & Minor, W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol. 276, 307–326 (1997). · DOI · Paper page
- Leslie, A. G. W. in Joint CCP4 and ESF-EACMB Newsletter on Protein Crystallography (Daresbury Laboratory, Warrington, UK, 1992).
- CCP4 The SERC (UK) Collaborative Computing Project No. 4, a Suite of Programs for Protein Crystallograph (Daresbury Laboratory, Warrington, UK, 1979).
- QUANTA96 X-ray Structure Analysis User's Reference (Molecular Simulations, SanDieg, 1996).
- Brünger, A. XPLOR version 3.1: A System for X-ray Crystallography and NMR (Yale Univ. Press, New Haven, CT, 1992).
- Evans, S. V. SETOR: hardware-lighted three-dimensional solid model representations of macromolecules. J. Mol. Graphics 11, 134–138 (1993). · DOI · Paper page
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Nucleases: diversity of structure, function and mechanism
Yang, W. (2011) · Quarterly Reviews of Biophysics · doi:10.1017/s0033583510000181 · Cited by 692
Making and Breaking Nucleic Acids: Two-Mg2+-Ion Catalysis and Substrate Specificity
Yang, W., Lee, J. Y., & Nowotny, M. (2006) · Molecular Cell · doi:10.1016/j.molcel.2006.03.013 · Cited by 573
Roles of ATM and NBS1 in chromatin structure modulation and DNA double-strand break repair
Berkovich, E., Monnat, R. J., & Kastan, M. B. (2007) · Nature Cell Biology · doi:10.1038/ncb1599 · Cited by 477
Self-citation3D-DART: a DNA structure modelling server
van Dijk, M., & Bonvin, A. M. J. J. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkp287 · Cited by 340
Meganucleases and DNA Double-Strand Break-Induced Recombination: Perspectives for Gene Therapy
Paques, F., & Duchateau, P. (2007) · Current Gene Therapy · doi:10.2174/156652307779940216 · Cited by 273
Metadata
- Authors
- Flick, K. E., Jurica, M. S., Monnat, R. J., & Stoddard, B. L.
- Venue
- Nature
- Published
- 1998-07-01
- Volume
- 394
- Issue
- 6688
- Pages
- 96-101
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2106173982
- Cited by
- 246
- References
- 2
- FWCI
- 18.47
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- www.springer.com/tdm (vor)
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- CoChat. (2026). Citation check: DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI. https://app.cochat.ai/papers/10.1038/27952
- The paper
- Flick, K. E., Jurica, M. S., Monnat, R. J., & Stoddard, B. L. (1998). DNA binding and cleavage by the nuclear intron-encoded homing endonuclease I-PpoI. Nature. https://doi.org/10.1038/27952
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.