Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells

Cited by (369)

Items 101–200 of 369

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  2. Single cell epigenome sequencing technologies
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  3. The Application of Single-Cell RNA Sequencing in Studies of Autoimmune Diseases: a Comprehensive Review
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  5. Epigenetic reprogramming during the maternal‐to‐zygotic transition
    Yurong Chen, Luyao Wang, Fucheng Guo, Xiangpeng Dai, Xiaoling Zhang · 2023 · MedComm
  6. 3D Enhancer–promoter networks provide predictive features for gene expression and coregulation in early embryonic lineages
    Dylan Murphy, Eralda Salataj, Dafne Campigli Di Giammartino, Javier Rodriguez-Hernaez, Andreas Kloetgen, Vidur Garg, Erin Char, Christopher M. Uyehara, Ly-Sha Ee, UkJin Lee et al. · 2023 · Nature Structural & Molecular Biology
  7. Single-cell bisulfite-free 5mC and 5hmC sequencing with high sensitivity and scalability
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  8. Progress in single-cell multimodal sequencing and multi-omics data integration
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  9. Nucleosomes in mammalian sperm: conveying paternal epigenetic inheritance or subject to reprogramming between generations?
    Laura Gaspa-Toneu, Antoine H.F.M. Peters · 2023 · Current Opinion in Genetics & Development
  10. High-throughput single-cell whole-genome amplification through centrifugal emulsification and eMDA
    Yusi Fu, Fangli Zhang, Xiannian Zhang, Junlong Yin, Meijie Du, Mengcheng Jiang, Lu Liu, Jie Li, Yanyi Huang, Jianbin Wang · 2019 · Communications Biology
  11. Single Cell Omics: From Assay Design to Biomedical Application
    Wen-Yi Chen, Shumin Li, Anuja Shreeram Kulkarni, Lin Huang, Jing Cao, Kun Qian, Jingjing Wan · 2019 · Biotechnology Journal
  12. Innovative in Silico Approaches for Characterization of Genes and Proteins
    Gh. Rasool Bhat, Itty Sethi, Bilal Rah, Rakesh Kumar, Dil Afroze · 2022 · Frontiers in Genetics
  13. Single-cell multi-omics profiling of human preimplantation embryos identifies cytoskeletal defects during embryonic arrest
    T. Q. Wang, Junhua Peng, Jiaqi Fan, Ni Tang, Rui Hua, Xueliang Zhou, Zhihao Wang, Longfei Wang, Yanling Bai, Xiaowan Quan et al. · 2024 · Nature Cell Biology
  14. Emerging techniques in single-cell epigenomics and their applications to cancer research.
    Pang‐Kuo Lo, Qun Yong Zhou · 2018 · PubMed
  15. Dynamic nucleosome organization after fertilization reveals regulatory factors for mouse zygotic genome activation
    Chenfei Wang, Chuan Chen, Xiaoyu Liu, Chong Li, Qiu Wu, Xiaolan Chen, Lingyue Yang, Xiaochen Kou, Yanhong Zhao, Hong Wang et al. · 2022 · Cell Research
  16. Effects of DNA Methylation on Gene Expression and Phenotypic Traits in Cattle: A Review
    Junxing Zhang, Hui Sheng, Chunli Hu, Fen Li, Bei Cai, Yanfen Ma, Yachun Wang, Yun Ma · 2023 · International Journal of Molecular Sciences
  17. Opportunities and Challenges in Advancing Plant Research with Single-cell Omics
    Mohammad Saidur Rhaman, Muhammad Ali, Wenxiu Ye, Bosheng Li · 2024 · Genomics Proteomics & Bioinformatics
  18. Non-genetic inheritance via the male germline in mammals
    Faye Baxter, Amanda Jane Drake · 2019 · Philosophical Transactions of the Royal Society B Biological Sciences
  19. Single-cell technologies — studying rheumatic diseases one cell at a time
    Peggie Cheung, Purvesh Khatri, Paul J. Utz, Alex J. Kuo · 2019 · Nature Reviews Rheumatology
  20. Unique and assay specific features of NOMe-, ATAC- and DNase I-seq data
    Karl J. V. Nordström, Florian Schmidt, Nina Gasparoni, Abdulrahman Salhab, Gilles Gasparoni, Kathrin Kattler, Fabian Müller, Peter Ebert, Ivan G. Costa, Nico Pfeifer et al. · 2019 · Nucleic Acids Research
  21. Advances in single-cell multi-omics profiling
    Dongsheng Bai, Jinying Peng, Chengqi Yi · 2021 · RSC Chemical Biology
  22. Single-cell RNA sequencing to track novel perspectives in HSC heterogeneity
    Pan Zhang, Xiang Li, Chengwei Pan, Xinmin Zheng, Bohan Hu, Ruiheng Xie, Jialu Hu, Xuequn Shang, Hui Yang · 2022 · Stem Cell Research & Therapy
  23. Computational approaches for inferring tumor evolution from single-cell genomic data
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  24. The Epigenetics of Early Life Adversity: Current Limitations and Possible Solutions
    Sarah Barnett-Burns, Daniel Medeiros Almeida, Gustavo Turecki · 2018 · Progress in molecular biology and translational science
  25. Epigenetic Regulation and Risk Factors During the Development of Human Gametes and Early Embryos
    Yang Wang, Qiang Liu, Fuchou Tang, Liying Yan, Jie Qiao · 2019 · Annual Review of Genomics and Human Genetics
  26. Applications of Single-Cell Omics to Dissect Tumor Microenvironment
    Tingting Guo, Weimin Li, Xuyu Cai · 2020 · Frontiers in Genetics
  27. Molecular Regulation of Paused Pluripotency in Early Mammalian Embryos and Stem Cells
    Vera Anna van der Weijden, Aydan Bulut-Karslıoğlu · 2021 · Frontiers in Cell and Developmental Biology
  28. Mammalian DNA methylome dynamics: mechanisms, functions and new frontiers
    Alex Wei, Hao Wu · 2022 · Development
  29. Epigenome dynamics in early mammalian embryogenesis
    Adam Burton, Maria‐Elena Torres‐Padilla · 2025 · Nature Reviews Genetics
  30. Parental Effects on Epigenetic Programming in Gametes and Embryos of Dairy Cows
    Chongyang Wu, Marc‐André Sirard · 2020 · Frontiers in Genetics
  31. EmAtlas: a comprehensive atlas for exploring spatiotemporal activation in mammalian embryogenesis
    Lei Zheng, Pengfei Liang, Chunshen Long, Haicheng Li, Hanshuang Li, Yuchao Liang, Xiang He, Qilemuge Xi, Yongqiang Xing, Yongchun Zuo · 2022 · Nucleic Acids Research
  32. Kick-starting the zygotic genome: licensors, specifiers, and beyond
    Zhuoning Zou, Qiuyan Wang, Xi Wu, Richard M. Schultz, Wei Xie · 2024 · EMBO Reports
  33. Update on the Epigenomic Implication of Embryo Cryopreservation Methods Applied in Assisted Reproductive Technologies With Potential Long-Term Health Effects
    Arturo Reyes Palomares, Kenny A. Rodriguez‐Wallberg · 2022 · Frontiers in Cell and Developmental Biology
  34. Applications of single-cell RNA sequencing in atopic dermatitis and psoriasis
    Dengmei Xia, Yiyi Wang, Yue Xiao, Wei Li · 2022 · Frontiers in Immunology
  35. Alternative splicing signatures in preimplantation embryo development
    Geng G. Tian, Jing Li, Ji Wu · 2020 · Cell & Bioscience
  36. Discovering DNA Methylation, the History and Future of the Writing on DNA
    Joshua D. Tompkins · 2022 · Journal of the History of Biology
  37. Advances in measuring DNA methylation
    Ruixia Sun, Ping Zhu · 2021 · Blood Science
  38. Single-cell RNA-sequencing in asthma research
    Weifeng Tang, Mihui Li, Fangzhou Teng, Jie Cui, Jingcheng Dong, Wenqian Wang · 2022 · Frontiers in Immunology
  39. Advances of DNase-seq for mapping active gene regulatory elements across the genome in animals
    Ailing Chen, Daozhen Chen, Ying Chen · 2018 · Gene
  40. Studying transcription factor function in the genome at molecular resolution
    Arnaud Regis Krebs · 2021 · Trends in Genetics
  41. Characterization of Global Research Trends and Prospects on Single-Cell Sequencing Technology: Bibliometric Analysis
    Quan Wang, Kelu Yang, Zhen Zhang, Zhu Wang, Chen Li, Lun Li, Jinhui Tian, Yingjiang Ye, Shan Wang, Kewei Jiang · 2021 · Journal of Medical Internet Research
  42. Single-cell omics: A new direction for functional genetic research in human diseases and animal models
    Siyuan Kong, Rongrong Li, Yun‐Han Tian, Yaqiu Zhang, Yuhui Lu, Qiaoer Ou, Peiwen Gao, Kui Li, Yubo Zhang · 2023 · Frontiers in Genetics
  43. Simultaneous Profiling of mRNA Transcriptome and DNA Methylome from a Single Cell
    Hu, Youjin, An, Qin, Guo, Ying, Zhong, Jiawei, Fan, Shuxin, Rao, Pinhong, Liu, Xialin, Liu, Yizhi, Fan, Guoping · 2019 · Methods in Molecular Biology
  44. Non-Coding Variants in Cancer: Mechanistic Insights and Clinical Potential for Personalized Medicine
    Marios Lange, Rodiola Begolli, Antonis Giakountis · 2021 · Non-Coding RNA
  45. DevOmics: an integrated multi-omics database of human and mouse early embryo
    Zhiqiang Yan, Jianting An, Yong Peng, Siming Kong, Qiang Liu, Ming Yang, Qilong He, Song Shi, Yidong Chen, Wei Chen et al. · 2021 · Briefings in Bioinformatics
  46. Single-Cell Analysis of the Transcriptome and Epigenome
    Krystyna Mazan-Mamczarz, Jisu Ha, Supriyo De, Payel Sen · 2022 · Methods in molecular biology
  47. Advances in single-cell sequencing technology in microbiome research
    Yinhang Wu, Zhuang Jing, Yifei Song, Xinyi Gao, Jian Chu, Shuwen Han · 2023 · Genes & Diseases
  48. Germ cell-specific eIF4E1b regulates maternal mRNA translation to ensure zygotic genome activation
    Yang, Guanghui, Xin, Qiliang, Feng, Iris, Wu, Di, Dean, Jurrien · 2023 · Genes & Development
  49. Applying Single-Cell Analysis to Gonadogenesis and DSDs (Disorders/Differences of Sex Development)
    Martin Andres Estermann, Craig A. Smith · 2020 · International Journal of Molecular Sciences
  50. Recent Developments in In Vitro Spermatogenesis and Future Directions
    In Ki Cho, Charles A. Easley · 2023 · Reproductive Medicine
  51. Improving the prognosis of pancreatic cancer: insights from epidemiology, genomic alterations, and therapeutic challenges
    Zhichen Jiang, Xiaohao Zheng, Min Li, Mingyang Liu · 2023 · Frontiers of Medicine
  52. Single-cell multi-omics sequencing: application trends, COVID-19, data analysis issues and prospects
    Lu Huo, Jiao Jiao Li, Ling Chen, Zu‐Guo Yu, György Hutvágner, Jinyan Li · 2021 · Briefings in Bioinformatics
  53. Integrated transcriptomics and epigenomics reveal chamber-specific and species-specific characteristics of human and mouse hearts
    Junpeng Gao, Yuxuan Zheng, Lin Li, Minjie Lu, Xiangjian Chen, Yu Wang, Yanna Li, Xiaomeng Liu, Yun Gao, Yunuo Mao et al. · 2021 · PLoS Biology
  54. Computational Methods for Single-Cell DNA Methylome Analysis
    Waleed Iqbal, Wanding Zhou · 2022 · Genomics Proteomics & Bioinformatics
  55. scNanoCOOL-seq: a long-read single-cell sequencing method for multi-omics profiling within individual cells
    Jianli Lin, Xiaohui Xue, Yan Wang, Yuan Zhou, Jian Wu, Haoling Xie, Mengya Liu, Lu Wen, Fuchou Tang · 2023 · Cell Research
  56. Developmental Functions of the Dynamic DNA Methylome and Hydroxymethylome in the Mouse and Zebrafish: Similarities and Differences
    Peter Jessop, Alexey S. Ruzov, Martin Gering · 2018 · Frontiers in Cell and Developmental Biology
  57. Single-cell analysis of the epitranscriptome: RNA modifications under the microscope
    Eva Crespo-García, Alberto Bueno-Costa, Manel Esteller · 2024 · RNA Biology
  58. Single-Cell TCR and Transcriptome Analysis: An Indispensable Tool for Studying T-Cell Biology and Cancer Immunotherapy
    Anna Pasetto, Yong‐Chen Lu · 2021 · Frontiers in Immunology
  59. New insights into oocyte cytoplasmic lattice-associated proteins
    Carlo Giaccari, Francesco Cecere, Lucia Argenziano, Angela Pagano, Andrea Riccio · 2024 · Trends in Genetics
  60. Long non-coding RNAs potentially function synergistically in the cellular reprogramming of SCNT embryos
    Fengrui Wu, Yong Liu, Qingqing Wu, Dengkun Li, Ling Zhang, Xiaoqing Wu, Rong Wang, Di Zhang, Shaorong Gao, Wenyong Li · 2018 · BMC Genomics
  61. Evolution and Developmental System Drift in the Endoderm Gene Regulatory Network of Caenorhabditis and Other Nematodes
    Chee Kiang Ewe, Yamila N. Torres Cleuren, Joel H. Rothman · 2020 · Frontiers in Cell and Developmental Biology
  62. Epigenetic regulation of cell fate transition: learning from early embryo development and somatic cell reprogramming
    Chuan Chen, Yawei Gao, Wenqiang Liu, Shaorong Gao · 2022 · Biology of Reproduction
  63. Application of single-cell RNA sequencing in embryonic development
    Yu Shangguan, Chunhong Li, Hua Lin, Minglin Ou, Donge Tang, Yong Dai, Qiang Yan · 2020 · Genomics
  64. scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells
    Stephen J. Clark, Ricard Argelaguet, Chantriolnt-Andreas Kapourani, Thomas M. Stubbs, Heather J. Lee, Celia Alda-Catalinas, Felix Krueger, Guido Sanguinetti, Gavin Kelsey, John C. Marioni et al. · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
  65. Integrating Micro and Nano Technologies for Cell Engineering and Analysis: Toward the Next Generation of Cell Therapy Workflows
    Prithvijit Mukherjee, So Hyun Park, Nibir Pathak, Cesar A. Patino, Gang Bao, Horacio Dante Espinosa · 2022 · ACS Nano
  66. Dynamics changes in the transcription factors during early human embryonic development
    Rasoul Godini, Hossein Fallahi · 2018 · Journal of Cellular Physiology
  67. Approaches for the integration of big data in translational medicine: single‐cell and computational methods
    Farzane Amirmahani, Nasim Ebrahimi, Fatemeh Molaei, Ferdos Faghihkhorasani, Kiarash Jamshidi Goharrizi, Seyedeh Masoumeh Mirtaghi, Marziyeh Borjian Boroujeni, Michael Richard Hamblin · 2021 · Annals of the New York Academy of Sciences
  68. Application of single-cell sequencing technologies in pancreatic cancer
    Mastan Mannarapu, Begum Dariya, Obul Reddy Bandapalli · 2021 · Molecular and Cellular Biochemistry
  69. Recent advances in single-cell epigenomics
    Akihito Harada, Hiroshi Kimurâ, Yasuyuki Ohkawa · 2021 · Current Opinion in Structural Biology
  70. Single-Cell Epigenomics Reveals Mechanisms of Cancer Progression
    Lindsay M. LaFave, Rachel E. Savage, Jason D. Buenrostro · 2022 · Annual Review of Cancer Biology
  71. Single-cell multiomics sequencing reveals the reprogramming defects in embryos generated by round spermatid injection
    Jing Wang, Cai Zhou, Shuai Gao, Xiuling Song, Xinyan Yang, Jiaqi Fan, Shaofang Ren, Linzi Ma, Jiexiang Zhao, Manman Cui et al. · 2022 · Science Advances
  72. Shoot-root signal circuit: Phytoremediation of heavy metal contaminated soil
    Shiyan Bai, Xiao Han, Dan Feng · 2023 · Frontiers in Plant Science
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  74. Clinical application of single‐cell RNA sequencing in disease and therapy
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  75. Advances and challenges in epigenomic single-cell sequencing applications
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  76. Single-Cell RNA Sequencing of Cerebrospinal Fluid as an Advanced Form of Liquid Biopsy for Neurological Disorders
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  77. Tools used to assay genomic instability in cancers and cancer meiomitosis
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