Single-cell multi-omics sequencing of mouse early embryos and embryonic stem cells

Guo, Fan, Li, Lin, Li, Jingyun, Wu, Xinglong, Hu, Boqiang, Zhu, Ping, Wen, Lu, Tang, Fuchou·2017·Cell Research

Cited by (369)

Items 301–369 of 369

  1. Integrated single-tube operation for rapid and uniform single-cell whole-genome sequencing
    Kun Yin, Shanqing Huang, Weidong Ruan, Haopai Wei, He Dong, Dianyi Liang, Meijuan Zhao, Wei Qi, Chaoyong James Yang, Zhi Zhu · 2023 · Nano Today
  2. The emerging field of opportunities for single-cell DNA methylation studies in hematology and beyond
    Leone Albinati, Agostina Bianchi, Renée Beekman · 2023 · Frontiers in Molecular Biosciences
  3. Chromatin region binning of gene expression for improving embryo cell subtype identification
    Pengfei Liang, Hanshuang Li, Chunshen Long, Mingzhu Liu, Jian Zhou, Yongchun Zuo · 2024 · Computers in Biology and Medicine
  4. Decoding autoimmune bullous diseases from single-cell RNA-seq and future directions
    Yan Wang, Ya‐Gang Zuo · 2025 · Expert Review of Clinical Immunology
  5. Epigenetic Features of Animal Biotechnologies
    Nathalie Beaujean · 2018 · Springer eBooks
  6. Pluripotent stem cell biology and engineering
    João P. Cotovio, Tiago G. Fernandes, Maria Margarida Diogo, Joaquim M. S. Cabral · 2019 · Elsevier eBooks
  7. Single-cell multi-omics sequencing and its applications in studying the nervous system
    Wang Chaoyang, Fan Xiaoying · 2021 · Biophysics Reports
  8. Endocrinology of a Single Cell: Tools and Insights
    Hanna Pinças, Frederique Murielle Ruf-Zamojski, Judith L. Turgeon, Stuart C. Sealfon · 2021 · Elsevier eBooks
  9. Dynamic Changes in Epigenetic Modifications During Mammalian Early Embryo Development
    Jie Yang, Wei Jiang · 2022 · Elsevier eBooks
  10. Single-cell co-mapping reveals relationship between chromatin state and gene expression in early zebrafish development
    Vivek Bhardwaj, Alberto Griffa, Helena Viñas Gaza, Peter J. Zeller, Alexander van Oudenaarden · 2026 · eLife
  11. High Spatial Resolution Profiling in Tree Species
    Stefania Giacomello, Nicolas Delhomme, Totte Niittylä, Hannele Tuominen, Nathaniel Robert Street · 2019 · Wiley eBooks
  12. A wave of minor de novo DNA methylation initiates in mouse 8-cell embryos and co-regulates imprinted X- chromosome inactivation with H3K27me3
    Yuan Yue, Wei Fu, Qianying Yang, Chao Zhang, Wenjuan Wang, Meiqiang Chu, Qingji Lyu, Yawen Tang, Jian Cui, Xiaodong Wang et al. · 2025 · eLife
  13. Business Law for Business Students
    David Parker, Gerald Box · 2008 · Victoria University Research Repository (Victoria University)
  14. Time to map single cell transcriptome for a whole organism
    Ping Zhu, Tao Cheng · 2018 · Blood Science
  15. Time-resolved succession of epigenetic regulation during early mammalian development
    Hebing Chen, Hao Li, Shuai Jiang, Xin Huang, Wanying Li, Ruijiang Li, Zhuo Zhang, Hao Hong, Chenghui Zhao, Xiaochen Bo · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  16. Integrative Modeling and Novel Technologies in Human Genomics
    Paulina Carmona-Mora, Juan I. Young · 2019 · Elsevier eBooks
  17. Simultaneous transcriptome and methylome profiles of single mouse oocytes provide novel insights on maturation and aging
    Qian Yan, Qin Cao, Jinyue Liao, Chun Shui Luk, Ashley Hoi Ching Suen, Annie Wing-Tung Lee, Ting Hei Thomas Chan, Judy Kin Wing Ng, Nelson L.S. Tang, Hoi Sze Chung et al. · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  18. New tools for ‘ZEBRA-FISHING’
    Veronica Bergo, Eirini Trompouki · 2021 · Briefings in Functional Genomics
  19. Recent Advances in Genomics-Based Animal Biotechnology: State of the Art of Selective Breeding and Embryo Genomics
    Claude Robert · 2019 · Elsevier eBooks
  20. Application of Single Cell Technology in Colorectal Cancer
    Begum Dariya, Ganji Purnachandra Nagaraju · 2021 · Springer eBooks
  21. Germ cells: ENCODE’s forgotten cell type
    John Robert McCarrey, Keren Cheng · 2021 · Biology of Reproduction
  22. scONE-seq: A one-tube single-cell multi-omics method enables simultaneous dissection of molecular phenotype and genotype heterogeneity from frozen tumors
    Angela Ruohao Wu, Lei Yu, Xinlei Wang, Quanhua Mu, Sindy Sing Ting Tam, Danson Shek Chun Loi, Aden Ka‐Yin Chan, Wai Sang Poon, Ho‐Keung Ng, Danny Tat-Ming Chan et al. · 2021 · Research Square
  23. Pluripotency transcription factor levels in sheep embryos correlate with mRNA regulatory elements
    Pábola Santos Nascimento, Marcelo Tigre Moura, Roberta Lane de Oliveira Silva, Pamela Ramos-Deus, José Carlos Ferreira-Silva, Antônio Santana Santos Filho, Cláudio Coutinho Bartolomeu, Ana Maria Benko‐Iseppon, Marcos A.L. Oliveira · 2021 · Livestock Science
  24. Handbuch der politischen Ikonographie von Uwe Fleckner, Martin Warnke und Hendrik Ziegler (Hg.) München: C.H. Beck Verlag, 2011
    Eveline G. Bouwers · 2011 · PUB – Publications at Bielefeld University (Bielefeld University)
  25. Advancement of Single-Cell Sequencing in Medulloblastoma
    Deepanshu Verma, Namyashree Nayak, Ashuthosh Singh, Ashutosh Kumar Singh, Neha Garg · 2022 · Methods in molecular biology
  26. Peer Review #2 of "Global transcriptome analysis of different stages of preimplantation embryo development in river buffalo (v0.1)"
    2019 · PeerJ
  27. Peer Review #2 of "Global transcriptome analysis of different stages of preimplantation embryo development in river buffalo (v0.2)"
    2019 · PeerJ
  28. Peer Review #1 of "Global transcriptome analysis of different stages of preimplantation embryo development in river buffalo (v0.2)"
    2019 · PeerJ
  29. scONE-seq: A one-tube single-cell multi-omics method enables simultaneous dissection of molecular phenotype and genotype heterogeneity from frozen tumors
    Angela Ruohao Wu, Lei Yu, Xinlei Wang, Quanhua Mu, Sindy Sing Ting Tam, Danson Shek Chun Loi, Aden Ka‐Yin Chan, Wai Sang Poon, Ho‐Keung Ng, D.C.T. Chan et al. · 2021 · Research Square
  30. Peer Review #1 of "Global transcriptome analysis of different stages of preimplantation embryo development in river buffalo (v0.1)"
    2019 · PeerJ
  31. Faculty Opinions recommendation of Joint profiling of chromatin accessibility and gene expression in thousands of single cells.
    Matthew Weirauch · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  32. Single-Cell Technologies: Advances in Single-Cell Migration and Multi-Omics
    Maryam Moarefian, Antonia McDonnell Capossela, Ryan Eom, Kiana Aran · 2022 · GEN Biotechnology
  33. Data from Single-Cell Dissection of the Multiomic Landscape of High-Grade Serous Ovarian Cancer
    Yicheng Wang, Haoling Xie, Xiaohong Chang, Wenqi Hu, Mengyao Li, Yi Li, Huiping Liu, Hongyan Cheng, Shang Wang, Ling Zhou et al. · 2023
  34. Quantitating and Characterizing the Effects of Epigenetic Targeted Drugs
    Emily Gruber, Alexander Charles Lewis, Lev M. Kats · 2023 · Wiley eBooks
  35. Epigenomic profiling at genome scale: from assays and analysis to clinical insights
    Sarah Ennis, Barry Digby, Pilib Ó Broin · 2023 · Elsevier eBooks
  36. Epigenetische Merkmale und Nutztierbiotechnologien
    Nathalie Beaujean · 2023 · Springer eBooks
  37. A wave of minor de novo DNA methylation initiates in mouse 8-cell embryos and co-regulates imprinted X- chromosome inactivation with H3K27me3
    Yuan Yue, Wei Fu, Qianying Yang, Chao Zhang, Wenjuan Wang, Meiqiang Chu, Qingji Lyu, Yawen Tang, Jian Cui, Xiaodong Wang et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  38. A wave of minor de novo DNA methylation initiates in mouse 8-cell embryos and co-regulates imprinted X- chromosome inactivation with H3K27me3
    Yuan Yue, Wei Fu, Qianying Yang, Chao Zhang, Wenjuan Wang, Meiqiang Chu, Qingji Lyu, Yawen Tang, Jian Cui, Xiaodong Wang et al. · 2024 · eLife
  39. Unravelling the genomics and proteomics aspects of the stemness phenotype in stem cells
    Sorra Sandhya, Kaushik Kumar Bharadwaj, Joyeeta Talukdar, Debabrat Baishya · 2024 · Elsevier eBooks
  40. Additional file 2 of A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in human pre-implantation embryos
    Chengchen Zhao, Naiqian Zhang, Yalin Zhang, Nuermaimaiti Tuersunjiang, Shaorong Gao, Wenqiang Liu, Yong Zhang · 2020 · Figshare
  41. Droplet-based ISSAAC-seq for multimodal profiling of chromatin accessibility and gene expression in single cells
    Wei Qing Xu, Ya‐Wen Chen, Yukun Hu, Xi Xian Chen · 2024 · Research Square
  42. Plate-based ISSAAC-seq for multimodal profiling of chromatin accessibility and gene expression in single cells
    Wei Qing Xu, Ya‐Wen Chen, Yukun Hu, Xi Xian Chen · 2024 · Research Square
  43. Droplet-based ISSAAC-seq for multimodal profiling of chromatin accessibility and gene expression in single cells
    Wei Qing Xu, Ya‐Wen Chen, Yukun Hu, Xi Xian Chen · 2024 · Research Square
  44. Single-cell proteomics of pre-implantation mouse embryos uncovers distinct asymmetry of certain proteins among early blastomeres
    Yuan Yuan, Mo Hu, Yinghui Zheng, Yutong Zhang, Yuxuan Pang, Xiaoliang Sunney Xie · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  45. Advances and breakthroughs in single-cell nucleic acid omics
    Zhongxing Sun, Zhuoning Li, Yin Tang, Fang Dong · 2025 · Scientia Sinica Vitae
  46. A statistical model for quantitative analysis of single-molecule footprinting data
    Evgeniy A. Ozonov, Laura Gaspa-Toneu, Antoine H.F.M. Peters · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  47. Plant Single-Cell Epigenomics: Updated Methods and Current Applications
    Gunna Sureshbabu Suruthi, Arumugam Vijaya Anand, Manoharan Rajesh, Pemula Gowtham, Tajudheen Nargis Begum, Seyed Mafiya Haniff, Palanisamy Sampathkumar, Asirvatham Alwin Robert · 2025 · CABI climate change series.
  48. Single-cell multi-omics analysis decodes molecular characteristics of sheep oocyte fate in vivo maturation
    Yujun Yao, Zihuan Du, Qiang Zhang, Xiaochen Kou, Hongyu Yang, Chanyuan Pan, Jing Li, Xiangwei Sun, Lu Zhang, Guoshi Liu et al. · 2025 · Fundamental Research
  49. Additional file 1 of DNA methylation changes during preimplantation development reveal inter-species differences and reprogramming events at imprinted genes
    Elena Ivanova, Sebastián Cánovas, Soledad García-Martínez, Raquel Romar, Jordana S. Lopes, Dimitrios V. Rizos, Maria Jesus Sánchez Calabuig, Felix Krueger, Andrews, Simon, Perez-Sanz, Fernando et al. · 2020 · Figshare
  50. Additional file 1 of MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data
    Argelaguet, Ricard, Damien Arnol, Danila Bredikhin, Yonatan Deloro, Britta Velten, Marioni, John C., Stegle, Oliver · 2020 · Figshare
  51. Additional file 3 of MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data
    Argelaguet, Ricard, Damien Arnol, Danila Bredikhin, Yonatan Deloro, Britta Velten, Marioni, John C., Stegle, Oliver · 2020 · Figshare
  52. Additional file 3 of A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in human pre-implantation embryos
    Zhao, Chengchen, Zhang, Naiqian, Zhang, Yalin, Nuermaimaiti Tuersunjiang, Gao, Shaorong, Liu, Wenqiang, Zhang, Yong · 2020 · Figshare
  53. Additional file 1 of A DNA methylation state transition model reveals the programmed epigenetic heterogeneity in human pre-implantation embryos
    Zhao, Chengchen, Zhang, Naiqian, Zhang, Yalin, Nuermaimaiti Tuersunjiang, Gao, Shaorong, Liu, Wenqiang, Zhang, Yong · 2020 · Figshare
  54. Additional file 2 of DNA methylation changes during preimplantation development reveal inter-species differences and reprogramming events at imprinted genes
    Elena Ivanova, Sebastián Cánovas, Soledad García-Martínez, Raquel Romar, Jordana S. Lopes, Dimitrios V. Rizos, Maria Jesus Sánchez Calabuig, Felix Krueger, Andrews, Simon, Perez-Sanz, Fernando et al. · 2020 · Figshare
  55. Additional file 2 of MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data
    Argelaguet, Ricard, Damien Arnol, Danila Bredikhin, Yonatan Deloro, Britta Velten, Marioni, John C., Stegle, Oliver · 2020 · Figshare
  56. Additional file 1 of Best practices on the differential expression analysis of multi-species RNA-seq
    Chung, Matthew, Bruno, Vincent M., Rasko, David A., Christina A. Cuomo, José Fernando Muñoz, Jonathan Livny, Shetty, Amol C., Anup Mahurkar, Dunning Hotopp, Julie C. · 2021 · Figshare
  57. Additional file 4 of MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data
    Argelaguet, Ricard, Damien Arnol, Danila Bredikhin, Yonatan Deloro, Britta Velten, Marioni, John C., Stegle, Oliver · 2020 · Figshare
  58. Bio-inspired DMSO-free ice controlling strategy for the cryopreservation of oocytes
    Shuo Liu, Xiaoqing He, Jiangxue Qu, Nan Wang, Xiaoshuai Chen, Caixia Han, Shenglin Jin, Jianjun Wang, Jie Yan, Jie Qiao · 2026 · Fundamental Research
  59. Single-cell co-mapping reveals relationship between chromatin state and gene expression in early zebrafish development
    Vivek Bhardwaj, Alberto Griffa, Helena Viñas Gaza, Peter J. Zeller, Alexander van Oudenaarden · 2026 · eLife
  60. Single-cell co-mapping reveals relationship between chromatin state and gene expression in early zebrafish development
    Vivek Bhardwaj, Alberto Griffa, Helena Viñas Gaza, Peter Zeller, Alexander van Oudenaarden · 2026 · eLife
  61. Shaping mammalian genomes: The regulation and co-option of transposable elements in early development and gametogenesis
    Antonio Docavo Garcia, Joanna W. Jachowicz · 2026 · Advances in genetics
  62. Influence des voies de signalisation IGF et MAPK sur la spécification des lignages de l'embryon de souris préimplantatoire
    Cécilia Bassalert · 2018
  63. Genetic and epigenetic mechanisms of the regulation of mouse embryonic stem cells self-renewal by the pluripotency transcription factor Nanog
    Victor Heurtier · 2018
  64. Transcriptional control induced by bcr-abl and its role in leukemic stem cell heterogeneity.
    Sarah Pagliaro · 2020 · theses.fr (ABES)
  65. The dynamic expression pattern of signaling pathways involved in early embryo development
    Zifan Song, Shi Song, Nan Wang, Xiaomeng Wang, Liying Yan, Jie Qiao, P B Yuan · 2026 · Cell Communication and Signaling
  66. DNA methylation in glioblastoma: insights from single-cell epigenomics
    Rana Zohreh, Nima Rezaei, Parisa Amirifar · 2026 · Epigenomics
  67. Dissecting the expression pattern during embryonic development and unveiling sustained ZGA genes with oncogenic relevance
    Han Xing, Yongjian Zhao · 2026 · BMC Genomics
  68. A systematic benchmarking framework and dual-view optimization strategy for single-cell DNA methylation imputation
    Hu Liang, Heyang Hua, Siyu Li, Shengquan Chen · 2026 · Briefings in Bioinformatics
  69. Mitigating genotype-driven bias improves atlas-scale single-cell DNA methylome profiling
    Xueer Song, Anna Diacofotaki, Bernard K. van der Veer, Kaat Leroy, Mio Aerden, Huiwen Che, Bernard Thienpont · 2026 · bioRxiv (Cold Spring Harbor Laboratory)