The DOI matches its Crossref record; 6 of the 6 references it cites were found in a registry or an index.
Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics
Open accessAbstract
By their metabolic activities, microorganisms have a crucial role in the biogeochemical cycles of elements. The complete understanding of these processes requires, however, the deciphering of both the structure and the function, including synecologic interactions, of microbial communities. Using a metagenomic approach, we demonstrated here that an acid mine drainage highly contaminated with arsenic is dominated by seven bacterial strains whose genomes were reconstructed. Five of them represent yet uncultivated bacteria and include two strains belonging to a novel bacterial phylum present in some similar ecosystems, and which was named ‘Candidatus Fodinabacter communificans.’ Metaproteomic data unravelled several microbial capabilities expressed in situ, such as iron, sulfur and arsenic oxidation that are key mechanisms in biomineralization, or organic nutrient, amino acid and vitamin metabolism involved in synthrophic associations. A statistical analysis of genomic and proteomic data and reverse transcriptase–PCR experiments allowed us to build an integrated model of the metabolic interactions that may be of prime importance in the natural attenuation of such anthropized ecosystems.
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The Microbial Engines That Drive Earth's Biogeochemical Cycles
Falkowski, P. G., Fenchel, T., & Delong, E. F. (2008) · Science · doi:10.1126/science.1153213 · Cited by 3,379
Community structure and metabolism through reconstruction of microbial genomes from the environment
Tyson, G. W., Chapman, J., Hugenholtz, P., Allen, E. E., Ram, R. J., Richardson, P. M., Solovyev, V. V., Rubin, E. M., Rokhsar, D. S., & Banfield, J. F. (2004) · Nature · doi:10.1038/nature02340 · Cited by 2,417
Toward Automatic Reconstruction of a Highly Resolved Tree of Life
Ciccarelli, F. D., Doerks, T., von Mering, C., Creevey, C. J., Snel, B., & Bork, P. (2006) · Science · doi:10.1126/science.1123061 · Cited by 1,663
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Genes and enzymes involved in bacterial oxidation and reduction of inorganic arsenic
Silver, S., & Phung, L. T. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.2.599-608.2005 · Cited by 612
Cited by
Hua, Z.-S., Han, Y.-J., Chen, L.-X., Liu, J., Hu, M., Li, S.-J., Kuang, J.-L., Chain, P. S. G., Huang, L.-N., & Shu, W.-S. (2015) · The ISME Journal · doi:10.1038/ismej.2014.212 · Cited by 268
Diversity and Abundance of Arsenic Biotransformation Genes in Paddy Soils from Southern China
Zhang, S.-Y., Zhao, F.-J., Sun, G.-X., Su, J.-Q., Yang, X.-R., Li, H., & Zhu, Y.-G. (2015) · Environmental Science & Technology · doi:10.1021/acs.est.5b00028 · Cited by 263
Alternative Strategies for Microbial Remediation of Pollutants via Synthetic Biology
Jaiswal, S., & Shukla, P. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.00808 · Cited by 195
Molecular microbiology methods for environmental diagnosis
Bouchez, T., Blieux, A. L., Dequiedt, S., Domaizon, I., Dufresne, A., Ferreira, S., Godon, J. J., Hellal, J., Joulian, C., Quaiser, A., et al. (2016) · Environmental Chemistry Letters · doi:10.1007/s10311-016-0581-3 · Cited by 121
Microbial stratification in low pH oxic and suboxic macroscopic growths along an acid mine drainage
Méndez-García, C., Mesa, V., Sprenger, R. R., Richter, M., Diez, M. S., Solano, J., Bargiela, R., Golyshina, O. V., Manteca, Á., Ramos, J. L., et al. (2014) · The ISME Journal · doi:10.1038/ismej.2013.242 · Cited by 101
Metadata
- Authors
- Bertin, P. N., Heinrich-Salmeron, A., Pelletier, E., Goulhen-Chollet, F., Arsène-Ploetze, F., Gallien, S., Lauga, B., Casiot, C., Calteau, A., Vallenet, D., Bonnefoy, V., Bruneel, O., Chane-Woon-Ming, B., Cleiss-Arnold, J., Duran, R., Elbaz-Poulichet, F., Fonknechten, N., Giloteaux, L., Halter, D., Koechler, S., Marchal, M., Mornico, D., Schaeffer, C., Smith, A. A. T., Van Dorsselaer, A., Weissenbach, J., Médigue, C., & Le Paslier, D.
- Venue
- The ISME Journal
- Publisher
- Oxford University Press (OUP)
- Published
- 2011-05-12
- Volume
- 5
- Issue
- 11
- Pages
- 1735-1747
- ISSN
- 1751-7362 (ISSN-L)
- 1751-7370
- OpenAlex
- W2068395350
- Cited by
- 169
- References
- 6
- FWCI
- 7.66
- Type
- journal article
- Language
- en
- Open access
- bronze
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- The paper
- Bertin, P. N., Heinrich-Salmeron, A., Pelletier, E., Goulhen-Chollet, F., Arsène-Ploetze, F., Gallien, S., Lauga, B., Casiot, C., Calteau, A., Vallenet, D., Bonnefoy, V., Bruneel, O., Chane-Woon-Ming, B., Cleiss-Arnold, J., Duran, R., Elbaz-Poulichet, F., Fonknechten, N., Giloteaux, L., Halter, D., . . . Le Paslier, D. (2011). Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta- and proteo-genomics. The ISME Journal. https://doi.org/10.1038/ismej.2011.51
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Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
