Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed

Cited by (398)

Items 201–300 of 398

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2. Bacterial communities and nitrogen transformation genes in streambank legacy sediments and implications for biogeochemical processing
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3. Soil microbes of an urban remnant riparian zone have greater potential for N removal than a degraded riparian zone
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4. Nitrogen Availability and Changes in Precipitation Alter Microbially Mediated NO and N2O Emissions From a Pinyon–Juniper Dryland
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5. Sulfolipid substitution ratios of Microcystis aeruginosa and planktonic communities as an indicator of phosphorus limitation in Lake Erie
   Robbie M. Martin, Maddie K. Denney, Helena L. Pound, Justin D. Chaffin, George S. Bullerjahn, Robert Michael L. McKay, Arthur Zastepa, Katarina A. Jones, Hector F. Castro, Shawn Robert Campagna et al. · 2023 · Limnology and Oceanography
6. Initial state of soil microbial communities determines their stress response
   Wassila Riah‐Anglet, Isabelle Trinsoutrot‐Gattin, Marie-Paule Norini, Adrien Gauthier, Xavier Latour, Karine Laval · 2018 · Journal of environmental chemical engineering
7. Black soldier fly larvae efficiently bioconvert the organic fraction of municipal solid waste thanks to the functional plasticity of their midgut
   Daniele Bruno, M. Bonelli, Maria Carmen Valoroso, Davis Roma, Aurora Montali, M.G. Pellegrino, M. Marzari, Silvia Caccia, Gianluca Tettamanti, Morena Casartelli · 2024 · Journal of Insects as Food and Feed
8. Microbial functional guilds and genes are key to explaining soil nutrient cycling alongside soil and plant variables
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9. Nitric oxide emission response to soil moisture is linked to transcriptional activity of functional microbial groups
   Thomas Behrendt, Gesche Braker, Guozheng Song, Bianka Pommerenke, Peter Dörsch · 2017 · Soil Biology and Biochemistry
10. Circadian Control of Protein Synthesis
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11. Soil Properties Interacting With Microbial Metagenome in Decreasing CH4 Emission From Seasonally Flooded Marshland Following Different Stages of Afforestation
    Qian Zhang, Jie Tang, Roey Angel, Dong Wang, Xingyi Hu, Shenghua Gao, Lei Zhang, Yuxi Tang, Xudong Zhang, Roger T. Koide et al. · 2022 · Frontiers in Microbiology
12. Community structure – Ecosystem function relationships in the Congo Basin methane cycle depend on the physiological scale of function
    Kyle Meyer, Anya M. Hopple, Ann M. Klein, Andrew H. Morris, Scott D. Bridgham, Brendan J. M. Bohannan · 2020 · Molecular Ecology
13. Comparable bacterial-mediated nitrogen supply and losses under organic reduced tillage and conventional intensive tillage
    Viviana Loaiza, Johan Six, Raphaël Wittwer, Marcel G. A. van der Heijden, Engil Isadora Pujol Pereira · 2019 · European Journal of Soil Biology
14. Conversion from rice fields to vegetable fields alters product stoichiometry of denitrification and increases N2O emission
    Chenglin Li, Zhijun Wei, Pinpin Yang, Jun Shan, Xiaoyuan Yan · 2022 · Environmental Research
15. Effects of vegetation cover and season on soil nitrifiers in an African savanna: Evidence of archaeal nitrifier inhibition by grasses
    Tharaniya Srikanthasamy, Sébastien Barot, Kouamé Fulgence Koffi, Kevin Tambosco, Yoan Marcangeli, David Carmignac, Aya Brigitte N’Dri, Jonathan Gervaix, Julie Leloup, Xavier Le Roux et al. · 2022 · Geoderma
16. The National Ecological Observatory Network’s soil metagenomes: assembly and basic analysis
    Zoey R. Werbin, Briana Hackos, Jorge Lopez-Nava, Michael C. Dietze, Jennifer M. Bhatnagar · 2021 · F1000Research
17. Metagenomic insight on consortium degradation of soil weathered petroleum and its supplement based on gene abundance change
    Hongfei Zhu, Yuting Fu, Jiashuai Yu, Wenjie Jing, Mengting Zhou · 2023 · Enzyme and Microbial Technology
18. Redox gradient shapes the abundance and diversity of mercury-methylating microorganisms along the water column of the Black Sea
    Léa Cabrol, Éric Capo, Daan M. van Vliet, F. A. Bastiaan von Meijenfeldt, Stefan Bertilsson, Laura Villanueva, Irene Sánchez‐Andrea, Erik Björn, Andrea G. Bravo, Lars‐Éric Heimbürger‐Boavida · 2023 · mSystems
19. Plasma membrane intrinsic protein OsPIP2;6 is involved in root-to-shoot arsenic translocation in rice (Oryza sativa L.)
    Ahmed G. Meselhy, Kareem A. Mosa, Sudesh Chhikara, Kundan Kumar, Craig Musante, Jason Christopher White, Om Parkash Dhankher · 2024 · Plant Cell Reports
20. Using Ipomoea aquatic as an environmental-friendly alternative to Elodea nuttallii for the aquaculture of Chinese mitten crab
    Linlin Shi, Meijuan Jin, Mingxing Shen, Changying Lu, Haihou Wang, Xingwei Zhou, Lijuan Mei, Shixue Yin · 2019 · PeerJ
21. Nitrate bioreduction dynamics in hyporheic zone sediments under cyclic changes of chemical compositions
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22. Differential Resilience of Soil Microbes and Ecosystem Functions Following Cessation of Long-Term Fertilization
    Matthew A. Nieland, Priscilla Moley, Janaye Hanschu, Lydia H. Zeglin · 2021 · Ecosystems
23. Separating N 2 O production and consumption in intact agricultural soil cores at different moisture contents and depths
    Erik S. Button, Karina A. Marsden, Philip D. Nightingale, Elizabeth R. Dixon, David Robert Chadwick, Davey L. Jones, Laura Maritza Cardenas · 2023 · European Journal of Soil Science
24. Soil pH modulates microbial nitrogen allocation in soil via compositional and metabolic shifts across forests in Japan
    Y.N. Liu, Yuta Ise, Hideto Takami, Rieko Urakawa, Ryunosuke Tateno, Atsushi Toyoda, Nobuhito Ohte, Weiyu Shi, Lin Jiang, Kazuo Isobe · 2025 · iMetaOmics.
25. Impacts of long chain fatty acids injection on biogas reactors performance stability and microbial community structure and function
    Maria Gaspari, Laura Treu, Victor Borin Centurion, Thomas Α. Kotsopoulos, Stefano Campanaro, Panagiotis Kougias · 2023 · Journal of Cleaner Production
26. High resistance of soils to short-term re-grazing in a long-term abandoned alpine pasture
    Alix Vidal, Anne Schucknecht, Paul Töchterle, Diana Rocio Andrade Linares, Noelia García-Franco, Andreas von Heßberg, Alexander Krämer, Andrea Sierts, Alfred Fischer, Georg Willibald et al. · 2020 · Agriculture Ecosystems & Environment
27. Seasonal dynamics of prokaryotic nitrogen cycling genes in cropland soils: Effects of soil texture, tillage, and environmental factors
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28. Divergent responses of carbon and nitrogen functional genes composition to enhanced rock weathering
    Qiong Chen, Daniel Sebastian Goll, Mardin O. Abdalqadir, Xianjin He, Guochen Li, Boyuan Bi, Tongtong Xu, Chenlu Li, Yanlong Chen, Xiulian Ma et al. · 2025 · Communications Earth & Environment
29. Long-Term Pollution Does Not Inhibit Denitrification and DNRA by Adapted Benthic Microbial Communities
    Elias Broman, Mohanad Abdelgadir, Stefano Bonaglia, Sara Forsberg, Johan Wikström, Jonas S. Gunnarsson, Francisco J. A. Nascimento, Sara Sjöling · 2023 · Microbial Ecology
30. Soil macroporosity modulates the extent of negative microbial associations during organic substance decomposition
    Qing Xia, Joshua L. Heitman, Wei Shi · 2023 · Soil Biology and Biochemistry
31. Soil microhabitats mediate microbial response in organic reduced tillage cropping
    Viviana Loaiza, Engil Isadora Pujol Pereira, Ping Huang, Raphaël Wittwer, Johan Six · 2019 · Applied Soil Ecology
32. Molecular Characterization and Expression Analysis of P38 MAPK Gene and Protein in Aquatic Midge, Chironomus riparius (Diptera: Chironomidae), Exposed to Environmental Contaminants
    Sunyoung Park, Jinhee Choi · 2017 · Archives of Environmental Contamination and Toxicology
33. Removal Capacities and Environmental Constrains of Denitrification and Anammox Processes in Eutrophic Riverine Sediments
    Jialin Li, Shuxian Yu, Song Qin · 2020 · Water Air & Soil Pollution
34. Coupling changes of soil functional gene abundances and extracellular enzyme activities across the diagnostic horizons of agricultural Isohumosols
    Zhuxiu LIU, Haidong Gu, Xiaojing Hu, Zhenhua Yu, Yansheng LI, Junjie Liu, Jian Jin, Xiaobing Liu, Guanghua Wang · 2023 · Pedosphere
35. Nitrogen-cycling genes in oyster reefs and surrounding sediments: Relationships with environmental factors and respective nitrogen rates
    Giulia Filippini, Ana B. Bugnot, Deepa Varkey, Nachshon Siboni, Angus J. P. Ferguson, Paul E. Gribben, Katherine R. Erickson, Julia Palmer, Katherine A. Dafforn · 2023 · Marine Pollution Bulletin
36. Dominant nitrogen metabolisms of a warm, seasonally anoxic freshwater ecosystem revealed using genome resolved metatranscriptomics
    Jemma M. Fadum, Mikayla Borton, Rebecca A. Daly, Kelly C. Wrighton, Ed K. Hall · 2024 · mSystems
37. Dynamics of nitrogen genes in intertidal sediments of Darwin Harbour and their connection to N-biogeochemistry
    Julia Fortune, Jodie van de Kamp, Bronwyn Holmes, Levente Bodrossy, Karen Susanne Gibb, Mirjam Kaestli · 2024 · Marine Environmental Research
38. Non-native earthworms preferentially promote bacterial rather than fungal denitrification in northern temperate deciduous forests
    Clara Villeneuve, Pascale B. Beauregard, Robert L. Bradley · 2024 · Soil Biology and Biochemistry
39. Geographical factor dominates spatial patterns of potential nitrate reduction rates in coastal wetland sediments in Fujian Province, China
    Ning Zhang, Zetao Dai, Feifei Wang, Shengchang Yang, Wenzhi Cao · 2024 · Frontiers in Earth Science
40. Mineral and organic fertilisation influence ammonia oxidisers and denitrifiers and nitrous oxide emissions in a long-term tillage experiment
    Anton Govednik, Klemen Eler, R. Mihelič, Marjetka Suhadolc · 2024 · The Science of The Total Environment
41. Soil gross N2O emission and uptake under two contrasting agroforestry systems: riparian tree buffer versus alley-cropping tree row
    Jie Luo, Lukas Beule, Guodong Shao, Dan Niu, Edzo Veldkamp, Marife D. Corre · 2024 · Biogeochemistry
42. Spatial distribution of potential nitrogen reduction rates and associated microbial communities revealed by metagenomic analysis in Yangtze River sediments
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43. Nitrogen regulation of the xyl genes of Pseudomonas putida mt‐2 propagates into a significant effect of nitrate on m ‐xylene mineralization in soil
    Nanna Bygvraa Svenningsen, Mette Haubjerg Nicolaisen, Hans Christian Bruun Hansen, Vı́ctor de Lorenzo, Ole Nybroe · 2016 · Microbial Biotechnology
44. Genome-Wide Survey and Expression Analyses of Hexokinase Family in Poplar (Populus trichocarpa)
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45. Soil pH dominance over livestock management in determining bacterial assemblages through a latitudinal gradient of European meadows and pastures
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46. 1557 - Peaks of in situ N₂O emissions are influenced by N₂O producing and reducing microbial communities across arable soils
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47. Novel HN-AD bacterium G11: Deciphering the denitrification mechanism and nanoFe3O4 enhancement research
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48. Determining geochemical and microbial parameters underlying geographic patterns of denitrification and anammox rates in the New River Estuary, North Carolina, USA
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49. On Single-Cell Enzyme Assays in Marine Microbial Ecology and Biogeochemistry
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50. Grazing Intensity Accelerates Surface Soil C and N Cycling in Alpine Pastures as Revealed by Soil Genes and δ15N Ratio
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51. Indirect microbial effects on methane flux are stronger when the environmental influence is weaker in a temperate forest ecosystem
    Jason S. Barker, Jesper Riis Christiansen, S. J. Grayston · 2016 · Soil Biology and Biochemistry
52. Inhibitory effect of nitrogen deposition on soil denitrifying activity in a subtropical forest
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53. Scale dependence of genome-derived microbial functional diversity informing soil functions
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54. Impact of nitrogen and phosphorus amendments on nitrogen‐cycling microbial abundances and potentials: A meta‐analysis
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55. Life history strategies to study the succession of H2-oxidizing bacteria and their ecological role along H2 concentration gradients in upland soils
    Xavier Baril, Philippe Constant · 2025 · Letters in Applied Microbiology
56. The impact of alfalfa intercropping and conventional tillage on N-cycling microbes: A Tuscan vineyard case study
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57. Microbial community dynamics and its relationship with biogeochemical processes under geochemical perturbations
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58. Ecological intensification strategies increase abundance of denitrifying functional genes in a greenhouse agricultural soil
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59. Short-term P addition may improve the stimulating effects of N deposition on N2O emissions in alpine grasslands on the Qinghai-Tibet Plateau
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60. Interactive Effect of Residue Quality and Agroecologies Modulate Soil C‐ and N‐Cycling Enzyme Activities, Microbial Gene Abundance, and Metabolic Quotient
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61. Genes involved in carbon, nitrogen, and sulfur cycling in an important estuarine ecosystem show coherent shifts in response to changes in environmental conditions
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62. Decoupling of bacterial production and respiration in the surface water of the North Pacific Subtropical Gyre
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63. Genomic fingerprints of the world’s soil ecosystems
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64. Impact of plant protection product applications on soil microbial nitrogen cycle function not fully captured by gene quantification
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65. Spatio‐Temporal Resolution of Microbial Functions and Taxa Associated With Cyanobacterial Harmful Algae Blooms Along a 500‐Km Aquatic Continuum in the Lake Erie Watershed
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66. Harmonizing chemical fertilizer and manure can alleviate N2O emission from high nitrogen-fertilized vegetable soils by regulating soil available carbon and nitrogen
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67. Interactive effects of attapulgite and nitrogen fertilizers on the nitrogen fertilizer use efficiency and residual levels in saline soil
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68. Soil abiotic properties, not microbial composition or functional gene abundance, determine enzyme activities in alpine grassland soils
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69. Urea fertilization and grass species alter microbial nitrogen cycling capacity and activity in a C 4 native grassland
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70. Changes in Bacterial Community Structure and Nitrogen Cycling Gene Abundance During the Fallow Recovery Phase of Shifting Cultivation in North-East India
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71. Wetland soil history shapes microbial community composition, while hydrologic disturbance alters greenhouse gas fluxes
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72. Nitrogen Inventories and Nitrogenase Expression Rates of a Drywood and a Subterranean Termite
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73. Microbial Nitric Oxide, Nitrous Oxide, and Nitrous Acid Emissions from Drylands
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74. Assessing the N Cycling Ecosystem Function-Processes and the Involved Functional Guilds upon Plant Litter Amendment in Lower Himalaya
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75. Predation by protists influences the temperature response of microbial communities
    Jennifer D. Rocca, Andrea Yammine, Marie Simonin, Jean P. Gibert · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
76. Impact of Winter Soil Processes on Nutrient Leaching in Cold Region Agroecosystems
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77. Novel soil quality indicators for the evaluation of agricultural management practices: a biological perspective
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78. Major trends and environmental correlates of spatiotemporal shifts in the distribution of genes compared to a biogeochemical model simulation in the Chesapeake Bay
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80. Differential responses of nitrifying and denitrifying microbial communities to EDTA remediation in heavy metal-contaminated versus non-contaminated soils
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81. Parallel responses of gross nitrogen mineralization rate and related functional gene abundance along subalpine secondary succession
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87. Effects of drought stress on soil nitrogen cycling
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88. The Coupling of Carbon, Nitrogen and Sulphur Transformational Processes in River Sediments Based on Correlationship among the Functional Genes
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89. Abundance and expression of hgcAB genes and mercury availability jointly explain methylmercury formation in stratified brackish waters
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90. Transcriptional control of hgcAB by an ArsR - like regulator in Pseudodesulfovibrio mercurii ND132
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91. Metaproteomic analysis decodes the trophic basis of microbes in the dark ocean
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94. Genome-wide identification and characterization of BAHD acyltransferases in black pepper (Piper nigrum L.) reveals their important role in piperine biosynthesis
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95. The role of mycorrhizal type and plant dominance in regulating nitrogen cycling in Oroarctic soils
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96. Depth-dependent links between microbial taxa and nitrous oxide emissions in a long-term cotton cropping system employing soil health practices
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97. Temperature sensitivity and electron acceptor regulation of denitrifying anaerobic methane oxidation in coastal mangrove sediments
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99. Harvesting reshapes greenhouse gas exchange in reservoir drawdown soils via soil state control and context-dependent microbial functions
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100. Soil compartment-specific bacterial communities and nitrogen cycling responses to warming magnitude in subarctic grasslands with contrasting thermal histories
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