Relationships between protein-encoding gene abundance and corresponding process are commonly assumed yet rarely observed

Cited by (398)

Items 101–200 of 398

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   Michael P. Ricketts, Rachel Susan Poretsky, J. M. Welker, Miquel A. Gonzàlez‐Meler · 2016 · SOIL
2. Ratio of nitrate to ammonium mainly drives soil bacterial dynamics involved in nitrate reduction processes
   Tingting An, Feng Wang, Lingling Ren, Shihan Ma, Shuangyi Li, Lingzhi Liu, Jingkuan Wang · 2021 · Applied Soil Ecology
3. Toward a function‐first framework to make soil microbial ecology predictive
   Lettice C. Hicks, Beat Frey, Rasmus Kjøller, Martin Lukáč, Mari Moora, James T. Weedon, Johannes Rousk · 2021 · Ecology
4. Abundant and Rare Bacterial Taxa Structuring Differently in Sediment and Water in Thermokarst Lakes in the Yellow River Source Area, Qinghai-Tibet Plateau
   Ze Ren, Cheng Zhang, Xia Li, Kang Ma, Baoshan Cui · 2022 · Frontiers in Microbiology
5. Tree Plantation Systems Influence Nitrogen Retention and the Abundance of Nitrogen Functional Genes in the Solomon Islands
   F. Reverchon, S. Bai, Xian Liu, T. Blumfield · 2015 · Frontiers in Microbiology
6. Incorporation of Microbial Functional Traits in Biogeochemistry Models Provides Better Estimations of Benthic Denitrification and Anammox Rates in Coastal Oceans
   Xiaoli Zhang, Qianqian Zhang, Anjing Yang, Lijun Hou, Yanling Zheng, Weidong Zhai, Jun Gong · 2018 · Journal of Geophysical Research Biogeosciences
7. Seeking the hotspots of nitrogen removal: A comparison of sediment denitrification rate and denitrifier abundance among wetland types with different hydrological conditions
   Danli Deng, Yongtai Pan, Guihua Liu, Wenzhi Liu, Lin Ma · 2020 · The Science of The Total Environment
8. Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
   Samuel Jacquiod, Inês Nunes, Asker Brejnrod, Martin Asser Hansen, Peter E. Holm, Anders Johansen, Kristian K. Brandt, Anders Priemé, Søren Johannes Sørensen · 2018 · Microbiome
9. Pasture in crop rotations influences microbial biodiversity and function reducing the potential for nitrogen loss from compost
   Jeth Walkup, Zachary B. Freedman, James B. Kotcon, Ember M. Morrissey · 2020 · Agriculture Ecosystems & Environment
10. Interaction Networks Are Driven by Community-Responsive Phenotypes in a Chitin-Degrading Consortium of Soil Microbes
    Ryan McClure, Yuliya Farris, Robert Danczak, William C. Nelson, Hyun‐Seob Song, Aimee K. Kessell, Joon‐Yong Lee, Sneha Couvillion, Christopher S. Henry, Janet K Jansson et al. · 2022 · mSystems
11. How elevated nitrogen load affects bacterial community structure and nitrogen cycling services in coastal water
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12. Functional Enzyme-Based Approach for Linking Microbial Community Functions with Biogeochemical Process Kinetics
    Minjing Li, Weijun Qian, Yuqian Gao, Liang Shi, Chongxuan Liu · 2017 · Environmental Science & Technology
13. Effect of CO2 Concentration on Uptake and Assimilation of Inorganic Carbon in the Extreme Acidophile Acidithiobacillus ferrooxidans
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14. Belowground changes to community structure alter methane-cycling dynamics in Amazonia
    Kyle Meyer, Andrew H. Morris, Kevin D. Webster, Ann M. Klein, Marie Kroeger, Laura Meredith, Andreas Brændholt, Fernanda Mancini Nakamura, Andressa M. Venturini, Leandro Fonseca de Souza et al. · 2020 · Environment International
15. Higher free-living N2 fixation at rock-soil interfaces than topsoils during vegetation recovery in karst soils
    Yuqian Tang, Jing Tian, Xiangzhen Li, Minjie Yao, Shaoqiang Wang, Yakov V. Kuzyakov, Jennifer A. J. Dungait · 2021 · Soil Biology and Biochemistry
16. Distinct Nitrogen Provisioning From Organic Amendments in Soil as Influenced by Farming System and Water Regime
    Martina Lori, Sarah Symanczik, Paul M. Mader, Norah Efosa, Sebastian Jaenicke, Franz Buegger, Simon Tresch, Alexander Goesmann, Andreas Gattinger · 2018 · Frontiers in Environmental Science
17. Spatial and temporal variability in the nitrogen cyclers of hypereutrophic Lake Taihu
    Lauren E. Krausfeldt, Xiangming Tang, Jodie van de Kamp, Guang Gao, Levente Bodrossy, Gregory L. Boyer, Steven W. Wilhelm · 2017 · FEMS Microbiology Ecology
18. The Biogeographic Pattern of Microbial Functional Genes along an Altitudinal Gradient of the Tibetan Pasture
    Qi Qi, Mengxin Zhao, Shiping Wang, Xingyu Ma, Yuxuan Wang, Ying Zhi Gao, Qiaoyan Lin, Xiangzhen Li, Baohua Gu, Guoxue Li et al. · 2017 · Frontiers in Microbiology
19. Response to nitrogen addition reveals metabolic and ecological strategies of soil bacteria
    Md Sainur Samad, Charlotte Johns, Karl G. Richards, Gary J. Lanigan, Cecile A. M. de Klein, Timothy J. Clough, Sergio E. Morales · 2017 · Molecular Ecology
20. Increased Denitrification Rates Associated with Shifts in Prokaryotic Community Composition Caused by Varying Hydrologic Connectivity
    Abigail Tomasek, Christopher M. Staley, Ping Wang, Thomas Kaiser, Nicole A. Lurndahl, Jessica L. Kozarek, Miki Hondzo, Michael Jay Sadowsky · 2017 · Frontiers in Microbiology
21. Spatial gradients in the characteristics of soil-carbon fractions are associated with abiotic features but not microbial communities
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22. An ensemble approach to the structure-function problem in microbial communities
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23. Getting the basics right on soil enzyme activities: A comment on Sainju et al. (2022)
    Andrew J. Margenot, Jordon Wade · 2023 · Agrosystems Geosciences & Environment
24. Compounded Disturbance Chronology Modulates the Resilience of Soil Microbial Communities and N-Cycle Related Functions
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25. Dissimilatory nitrate ammonification and N2 fixation helps maintain nitrogen nutrition in resource-limited rice paddies
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26. CRYPTOCHROMES promote daily protein homeostasis
    Wong, David C S, Seinkmane, Estere, Zeng, Aiwei, Stangherlin, Alessandra, Rzechorzek, Nina M, Beale, Andrew D, Day, Jason, Reed, Martin, Peak‐Chew, Sew Y, Styles, Christine T et al. · 2022 · The EMBO Journal
27. Impact of submarine groundwater discharge on biogeochemistry and microbial communities in pockmarks
    Lotta Purkamo, Cátia Milene Ehlert von Ahn, Tom Jilbert, Muhammad Muniruzzaman, Hermann W. Bange, Anna-Kathrina Jenner, Michael E. Böttcher, Joonas J. Virtasalo · 2022 · Geochimica et Cosmochimica Acta
28. Contribution of the seed microbiome to weed management
    Dorette Müller‐Stöver, Ole Nybroe, Bárbara Baraibar, Donato Loddo, Hanan Eizenberg, Kris French, Mette Sønderskov, Paul Neve, Duane A. Peltzer, Norbert Maczey et al. · 2016 · Weed Research
29. Metatranscriptomic data reveal the effect of different community properties on multifunctional redundancy
    Sara Beier, Dandan Izabel‐Shen, Thomas Schott, Klaus Jürgens · 2017 · Molecular Ecology
30. Microbial community structure and functional potential of lava-formed Gotjawal soils in Jeju, Korea
    Jong‐Shik Kim, Dae-Shin Kim, Keun Chul Lee, Jung‐Sook Lee, Gary M. King, Sanghoon Kang · 2018 · PLoS ONE
31. Volatile Gas Production by Methyl Halide Transferase: An In Situ Reporter Of Microbial Gene Expression In Soil
    Hsiao-Ying Cheng, Caroline A. Masiello, George N. Bennett, Jonathan J. Silberg · 2016 · Environmental Science & Technology
32. Impact of Irrigation Strategies on Tomato Root Distribution and Rhizosphere Processes in an Organic System
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33. Oxygen‐deficient water zones in the Baltic Sea promote uncharacterized Hg methylating microorganisms in underlying sediments
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34. Farm management, not soil microbial diversity, controls nutrient loss from smallholder tropical agriculture
    Stephen Andrew Wood, Maya Almaraz, Mark A. Bradford, Krista L. McGuire, Shahid Naeem, Christopher Neill, C. A. Palm, Katherine L. Tully, Jizhong Z. Zhou · 2015 · Frontiers in Microbiology
35. Effect of soil horizon stratigraphy on the microbial ecology of alpine paleosols
    Jonathan M. Young, Timofey Skvortsov, Brian P. Kelleher, William C. Mahaney, Peeter Somelar, Christopher C. R. Allen · 2018 · The Science of The Total Environment
36. Influence of rye cover cropping on denitrification potential and year-round field N2O emissions
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37. Revisiting the involvement of ammonia oxidizers and denitrifiers in nitrous oxide emission from cropland soils
    Wei Wei, Kazuo Isobe, Yutaka Shiratori, Midori Yano, Sakae Toyoda, Keisuke Koba, Naohiro Yoshida, Haoyang Shen, Keishi Senoo · 2021 · Environmental Pollution
38. Anaerobic mercury methylators inhabit sinking particles of oxic water columns
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39. Revisiting the relationships between soil nitrous oxide emissions and microbial functional gene abundances
    Yong Zhang, Ji Chen, Xiaoli Cheng · 2023 · Global Change Biology
40. Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes
    Zihao Zhao, Federico Baltar, Gerhard J. Herndl · 2024 · Microbiology Spectrum
41. Substrate uptake patterns shape niche separation in marine prokaryotic microbiome
    Zihao Zhao, Chie Amano, Thomas Reinthaler, Mónica V. Orellana, Gerhard J. Herndl · 2024 · Science Advances
42. Assessment of Bacterial Communities and Predictive Functional Profiling in Soils Subjected to Short-Term Fumigation-Incubation
    Lin Chen, Yu Luo, Jianming M. Xu, Zhuyun Yu, Kaile Zhang, Philip Charles Brookes · 2016 · Microbial Ecology
43. Response of microbial taxonomic and nitrogen functional attributes to elevated nitrate in suburban groundwater
    Lingzhi Zhang, Wei He, Fu-Yi Huang, Wei He, Pengpeng Zhou, Cuibai Chen, Christopher Rensing, Kristian K. Brandt, Jiangtao He, Fei Liu et al. · 2023 · The Science of The Total Environment
44. Effects of microplastics on functional genes related to CH4 and N2O metabolism in bacteriophages during manure composting and its planting applications
    Wei-Kang Deng, Jun-Liang He, Jing-Yuan Chen, Ruiting Wu, Si-Cheng Xing, Xindi Liao · 2023 · Journal of Hazardous Materials
45. Diel Oscillation of Microbial Gene Transcripts Declines With Depth in Oligotrophic Ocean Waters
    Alice Vislova, Oscar A. Sosa, John M. Eppley, Anna E. Romano, Edward F. DeLong · 2019 · Frontiers in Microbiology
46. Investigating drivers of free-living diazotroph activity in paddy soils across China
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47. Physical Factors Correlate to Microbial Community Structure and Nitrogen Cycling Gene Abundance in a Nitrate Fed Eutrophic Lagoon
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48. Environmental factors, but not abundance and diversity of nitrifying microorganisms, explain sediment nitrification rates in Yangtze lakes
    Lu Yao, Chengrong R. Chen, Guihua Liu, Feng Li, Wenzhi Liu · 2018 · RSC Advances
49. A Novel Inorganic Sulfur Compound Metabolizing Ferroplasma-Like Population Is Suggested to Mediate Extracellular Electron Transfer
    Gaofeng Ni, Domenico Simone, Daniela Palma, Elias Broman, Xiaofen Wu, Stephanie J. Turner, Mark Dopson · 2018 · Frontiers in Microbiology
50. Preferential flow paths shape the structure of bacterial communities in a clayey till depth profile
    Frederik Bak, Ole Nybroe, Bang-Xiao Zheng, Nora Badawi, Xiuli Hao, Mette Haubjerg Nicolaisen, Jens Aamand · 2019 · FEMS Microbiology Ecology
51. Influence of chemical fumigation and biofumigation on soil nitrogen cycling processes and nitrifier and denitrifier abundance
    Louise B. Sennett, David L. Burton, Claudia Goyer, Bernie J. Zebarth · 2021 · Soil Biology and Biochemistry
52. Protist Predation Influences the Temperature Response of Bacterial Communities
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53. Seasonal and Spatial Variation in the Location and Reactivity of a Nitrate‐Contaminated Groundwater Discharge Zone in a Lakebed
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54. Mercury Methylating Microbial Community Structure in Boreal Wetlands Explained by Local Physicochemical Conditions
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55. Unlocking our understanding of intermittent rivers and ephemeral streams with genomic tools
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56. Asymmetric responses of abundance and diversity of N‐cycling genes to altered precipitation in arid grasslands
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57. Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean
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58. Effects of Land Use and Restoration on Soil Microbial Communities
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59. Bicarbonate uptake rates and diversity of RuBisCO genes in saline lake sediments
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60. Nitrogen Fixation and Resorption Efficiency Differences Among Twelve Upland and Lowland Switchgrass Cultivars
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61. Bacterial population-level trade-offs between drought tolerance and resource acquisition traits impact decomposition
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62. Correlations of functional genes involved in methane, nitrogen and sulfur cycling in river sediments
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63. Impact of Intercropping on the Diazotrophic Community in the Soils of Continuous Cucumber Cropping Systems
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64. Ectomycorrhizal fungi are associated with reduced nitrogen cycling rates in temperate forest soils without corresponding trends in bacterial functional groups
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65. Dissimilatory nitrate reduction and functional genes in two subtropical rivers, China
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66. Arable soil nitrogen dynamics reflect organic inputs via the extended composite phenotype
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67. Regulation of Hydrolytic Enzyme Activity in Aquatic Microbial Communities Hosted by Carnivorous Pitcher Plants
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68. Evaporation-induced hydrodynamics promote conjugation-mediated plasmid transfer in microbial populations
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69. Resistance and Resilience of Soil Nitrogen Cycling to Drought and Heat Stress in Rehabilitated Urban Soils
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70. A quantitative analysis of microbial community structure-function relationships in plant litter decay
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71. Distinct N-cycling microbial communities contribute to microtopographic variation in soil N2O emissions from denitrification
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72. Are nitrogen and carbon cycle processes impacted by common stream antibiotics? A comparative assessment of single vs. mixture exposures
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73. Tillage intensity and plant rhizosphere selection shape bacterial-archaeal assemblage diversity and nitrogen cycling genes
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74. Microbial Ecology to Ocean Carbon Cycling: From Genomes to Numerical Models
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75. Stream sediment bacterial communities exhibit temporally-consistent and distinct thresholds to land use change in a mixed-use watershed
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76. Denitrification‐Driven Transcription and Enzyme Production at the River‐Groundwater Interface: Insights From Reactive‐Transport Modeling
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77. Microplastics from polyvinyl chloride agricultural plastic films do not change nitrogenous gas emission but enhance denitrification potential
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78. Wildfire‐Induced Losses of Soil Particulate and Mineral‐Associated Organic Carbon Persist for Over 4 Years in a Chaparral Ecosystem
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79. Regulation of potential denitrification rates in sediments by microbial-driven elemental coupled metabolisms
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84. Expression of N‐cycling genes of root microbiomes provides insights for sustaining oilseed crop production
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86. Gross N2O Production Process, Not Consumption, Determines the Temperature Sensitivity of Net N2O Emission in Arable Soil Subject to Different Long-Term Fertilization Practices
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92. Microbial Potential for Ecosystem N Loss Is Increased by Experimental N Deposition
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93. Seasonal and spatial variations of prokaryoplankton communities in a salinity-influenced watershed, China
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98. Microbial community responses determine how soil–atmosphere exchange of carbonyl sulfide, carbon monoxide, and nitric oxide responds to soil moisture
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99. Fungal β-glucosidase gene and corresponding enzyme activity are positively related to soil organic carbon in unmanaged woody plantations
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100. Exploring sub-species variation in food microbiomes: a roadmap to reveal hidden diversity and functional potential
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