The DOI matches its Crossref record; 51 of the 51 references it cites were found in a registry or an index.
The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China
Open accessAbstract
Bacteria play key roles in the ecology of both aquatic and terrestrial ecosystems; however, little is known about their diversity and biogeography, especially in the rare microbial biosphere of inland freshwater ecosystems. Here we investigated aspects of the community ecology and geographical distribution of abundant and rare bacterioplankton using high-throughput sequencing and examined the relative influence of local environmental variables and regional (spatial) factors on their geographical distribution patterns in 42 lakes and reservoirs across China. Our results showed that the geographical patterns of abundant and rare bacterial subcommunities were generally similar, and both of them showed a significant distance–decay relationship. This suggests that the rare bacterial biosphere is not a random assembly, as some authors have assumed, and that its distribution is most likely subject to the same ecological processes that control abundant taxa. However, we identified some differences between the abundant and rare groups as both groups of bacteria showed a significant positive relationship between sites occupancy and abundance, but the abundant bacteria exhibited a weaker distance–decay relationship than the rare bacteria. Our results implied that rare subcommunities were mostly governed by local environmental variables, whereas the abundant subcommunities were mainly affected by regional factors. In addition, both local and regional variables that were significantly related to the spatial variation of abundant bacterial community composition were different to those of rare ones, suggesting that abundant and rare bacteria may have discrepant ecological niches and may play different roles in natural ecosystems.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Standard methods: For the examination of water and waste water
(1990) · Analytical Biochemistry · doi:10.1016/0003-2697(90)90598-4 · Cited by 72,091
Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00062-07 · Cited by 19,885
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 19,549
UCHIME improves sensitivity and speed of chimera detection
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr381 · Cited by 15,114
The diversity and biogeography of soil bacterial communities
Fierer, N., & Jackson, R. B. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0507535103 · Cited by 5,711
The metacommunity concept: a framework for multi‐scale community ecology
Leibold, M. A., Holyoak, M., Mouquet, N., Amarasekare, P., Chase, J. M., Hoopes, M. F., Holt, R. D., Shurin, J. B., Law, R., Tilman, D., et al. (2004) · Ecology Letters · doi:10.1111/j.1461-0248.2004.00608.x · Cited by 5,391
Multivariate Analysis of Ecological Data using CANOCO
Lepš, J., & Šmilauer, P. (2003) · Cambridge University Press eBooks · doi:10.1017/cbo9780511615146 · Cited by 4,554
Microbial biogeography: putting microorganisms on the map
Martiny, J. B. H., Bohannan, B. J. M., Brown, J. H., Colwell, R. K., Fuhrman, J. A., Green, J. L., Horner-Devine, M. C., Kane, M., Krumins, J. A., Kuske, C. R., et al. (2006) · Nature Reviews Microbiology · doi:10.1038/nrmicro1341 · Cited by 3,022
Benefits of plant diversity to ecosystems: immediate, filter and founder effects
Grime, J. P. (1998) · Journal of Ecology · doi:10.1046/j.1365-2745.1998.00306.x · Cited by 3,019
Directions in Conservation Biology
Caughley, G. (1994) · The Journal of Animal Ecology · doi:10.2307/5542 · Cited by 2,405
Cited by
Jiao, S., Yang, Y., Xu, Y., Zhang, J., & Lu, Y. (2020) · The ISME Journal · doi:10.1038/s41396-019-0522-9 · Cited by 1,052
Chen, W., Ren, K., Isabwe, A., Chen, H., Liu, M., & Yang, J. (2019) · Microbiome · doi:10.1186/s40168-019-0749-8 · Cited by 804
Self-citationWu, W., Logares, R., Huang, B., & Hsieh, C. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13606 · Cited by 283
Niño-García, J. P., Ruiz-González, C., & del Giorgio, P. A. (2016) · The ISME Journal · doi:10.1038/ismej.2015.226 · Cited by 257
Chiu, C.-Y., Chan, Y.-L., Tsai, Y.-S., Chen, S.-A., Wang, C.-J., Chen, K.-F., & Chung, I.-F. (2017) · Scientific Reports · doi:10.1038/s41598-017-02067-7 · Cited by 84
Metadata
- Authors
- Liu, L., Yang, J., Yu, Z., & Wilkinson, D. M.
- Venue
- The ISME Journal
- Publisher
- Oxford University Press (OUP)
- Published
- 2015-03-06
- Volume
- 9
- Issue
- 9
- Pages
- 2068-2077
- ISSN
- 1751-7362 (ISSN-L)
- 1751-7370
- OpenAlex
- W1968134992
- Cited by
- 572
- References
- 51
- FWCI
- 18.94
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China. https://app.cochat.ai/papers/10.1038/ismej.2015.29
- The paper
- Liu, L., Yang, J., Yu, Z., & Wilkinson, D. M. (2015). The biogeography of abundant and rare bacterioplankton in the lakes and reservoirs of China. The ISME Journal. https://doi.org/10.1038/ismej.2015.29
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.