The DOI matches its Crossref record; 43 of the 43 references it cites were found in a registry or an index.
The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts
Open accessAbstract
Despite being one of the simplest metazoans, corals harbor some of the most highly diverse and abundant microbial communities. Differentiating core, symbiotic bacteria from this diverse host-associated consortium is essential for characterizing the functional contributions of bacteria but has not been possible yet. Here we characterize the coral core microbiome and demonstrate clear phylogenetic and functional divisions between the micro-scale, niche habitats within the coral host. In doing so, we discover seven distinct bacterial phylotypes that are universal to the core microbiome of coral species, separated by thousands of kilometres of oceans. The two most abundant phylotypes are co-localized specifically with the corals’ endosymbiotic algae and symbiont-containing host cells. These bacterial symbioses likely facilitate the success of the dinoflagellate endosymbiosis with corals in diverse environmental regimes.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
QIIME allows analysis of high-throughput community sequencing data
Caporaso, J. G., Kuczynski, J., Stombaugh, J., Bittinger, K., Bushman, F. D., Costello, E. K., Fierer, N., Peña, A. G., Goodrich, J. K., Gordon, J. I., et al. (2010) · Nature Methods · doi:10.1038/nmeth.f.303 · Cited by 34,887
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
DeSantis, T. Z., Hugenholtz, P., Larsen, N., Rojas, M., Brodie, E. L., Keller, K., Huber, T., Dalevi, D., Hu, P., & Andersen, G. L. (2006) · Applied and Environmental Microbiology · doi:10.1128/aem.03006-05 · Cited by 10,891
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
Langille, M. G. I., Zaneveld, J., Caporaso, J. G., McDonald, D., Knights, D., Reyes, J. A., Clemente, J. C., Burkepile, D. E., Vega Thurber, R. L., Knight, R., et al. (2013) · Nature Biotechnology · doi:10.1038/nbt.2676 · Cited by 9,116
Going back to the roots: the microbial ecology of the rhizosphere
Philippot, L., Raaijmakers, J. M., Lemanceau, P., & van der Putten, W. H. (2013) · Nature Reviews Microbiology · doi:10.1038/nrmicro3109 · Cited by 3,883
Microbial diversity in the deep sea and the underexplored “rare biosphere”
Sogin, M. L., Morrison, H. G., Huber, J. A., Welch, D. M., Huse, S. M., Neal, P. R., Arrieta, J. M., & Herndl, G. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605127103 · Cited by 3,701
Structure and functions of the bacterial microbiota of plants
Bulgarelli, D., Schlaeppi, K., Spaepen, S., van Themaat, E. V. L., & Schulze-Lefert, P. (2013) · Annual Review of Plant Biology · doi:10.1146/annurev-arplant-050312-120106 · Cited by 3,308
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
Letunic, I., & Bork, P. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btl529 · Cited by 3,299
Defining the core Arabidopsis thaliana root microbiome
Lundberg, D. S., Lebeis, S. L., Paredes, S. H., Yourstone, S., Gehring, J., Malfatti, S., Tremblay, J., Engelbrektson, A., Kunin, V., Rio, T. G. D., et al. (2012) · Nature · doi:10.1038/nature11237 · Cited by 2,879
Animals in a bacterial world, a new imperative for the life sciences
McFall-Ngai, M., Hadfield, M. G., Bosch, T. C. G., Carey, H. V., Domazet-Lošo, T., Douglas, A. E., Dubilier, N., Eberl, G., Fukami, T., Gilbert, S. F., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1218525110 · Cited by 2,782
Daims, H., Brühl, A., Amann, R., Schleifer, K.-H., & Wagner, M. (1999) · Systematic and Applied Microbiology · doi:10.1016/s0723-2020(99)80053-8 · Cited by 2,274
Cited by
Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience
Peixoto, R. S., Rosado, P. M., Leite, D. C. D. A., Rosado, A. S., & Bourne, D. G. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00341 · Cited by 594
Self-citationCalypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions
Zakrzewski, M., Proietti, C., Ellis, J. J., Hasan, S., Brion, M.-J., Berger, B., & Krause, L. (2017) · Bioinformatics · doi:10.1093/bioinformatics/btw725 · Cited by 567
Self-citationMicrobes Drive Evolution of Animals and Plants: the Hologenome Concept
Rosenberg, E., & Zilber-Rosenberg, I. (2016) · mBio · doi:10.1128/mbio.01395-15 · Cited by 499
Applying the core microbiome to understand host–microbe systems
Risely, A. (2020) · Journal of Animal Ecology · doi:10.1111/1365-2656.13229 · Cited by 363
Coral bacterial community structure responds to environmental change in a host-specific manner
Ziegler, M., Grupstra, C. G. B., Barreto, M. M., Eaton, M., BaOmar, J., Zubier, K., Al-Sofyani, A., Turki, A. J., Ormond, R., & Voolstra, C. R. (2019) · Nature Communications · doi:10.1038/s41467-019-10969-5 · Cited by 328
Metadata
- Authors
- D Ainsworth, T., Krause, L., Bridge, T., Torda, G., Raina, J.-B., Zakrzewski, M., Gates, R. D., Padilla-Gamiño, J. L., Spalding, H. L., Smith, C., Woolsey, E. S., Bourne, D. G., Bongaerts, P., Hoegh-Guldberg, O., & Leggat, W.
- Venue
- The ISME Journal
- Publisher
- Oxford University Press (OUP)
- Published
- 2015-04-17
- Volume
- 9
- Issue
- 10
- Pages
- 2261-2274
- ISSN
- 1751-7362 (ISSN-L)
- 1751-7370
- OpenAlex
- W2165520535
- Cited by
- 549
- References
- 43
- FWCI
- 46.34
- Type
- journal article
- Language
- en
- Open access
- hybrid
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. https://app.cochat.ai/papers/10.1038/ismej.2015.39
- The paper
- D Ainsworth, T., Krause, L., Bridge, T., Torda, G., Raina, J.-B., Zakrzewski, M., Gates, R. D., Padilla-Gamiño, J. L., Spalding, H. L., Smith, C., Woolsey, E. S., Bourne, D. G., Bongaerts, P., Hoegh-Guldberg, O., & Leggat, W. (2015). The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. The ISME Journal. https://doi.org/10.1038/ismej.2015.39
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.