Student or educator? Sign up with your school email and get 6 months of Pro free.
Cited by 51

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Ancient links between Siberians and Native Americans revealed by subtyping the Y chromosome haplogroup Q1a

Malyarchuk, Boris, Derenko, Miroslava, Denisova, Galina, Maksimov, Arkady, Wozniak, Marcin, Grzybowski, Tomasz, Dambueva, Irina, Zakharov, Ilya·2011·Journal of Human Genetics

Abstract

To investigate the structure of Y chromosome haplogroups R-M207 and Q-M242 in human populations of North Asia, we have performed high-resolution genotyping using both single nucleotide polymorphisms and short tandem repeat (STR)-based approaches of 121 M207- and M242-derived samples from 885 males of 16 ethnic groups of Siberia and East Asia. As a result, the following Y chromosome haplogroups were revealed: R1b1b1-M73 (2.0%), R1b1b2-M269 (0.7%), R2-M124 (1.1%), Q1a*-MEH2 (0.5%), Q1a2-M25 (0.1%), Q1a3*-M346 (9.2%) and Q1a3a-M3 (0.2%). Despite the low coalescence age of haplogroup Q1a3*-M346, which is estimated in South Siberia as about 4.5±1.5 thousand years ago (Ka), divergence time between these Q1a3*-M346 haplotypes and Amerindian-specific haplogroup Q1a3a-M3 is equal to 13.8±3.9 Ka, pointing to a relatively recent entry date to America. In addition, unique cluster of haplotypes belonging to Q1a*-MEH2 was found in Koryaks inhabiting the Sea of Okhotsk coast (at a frequency of 10.3%). Although the level of STR diversity associated with Q1a*-MEH2 is very low, this lineage appears to be closest to the extinct Palaeo-Eskimo individuals belonging to the Saqqaq culture arisen in the New World Arctic about 5.5 Ka. This finding suggests that Q1a*-MEH2 likely traces a population migration originating in Northeast Siberia across the Bering Strait.

Overview

Integrity signals

Registry

Crossref · 10.1038/jhg.2011.64

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Recomputing p-values needs the paper’s full text.

Verification

Claims the paper makes

This paper’s full text isn’t openly available, so its claims and self-check weren’t run. The registry and citation checks still apply.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Citations

Cites

Show all 1 references

Research works printed but not linked: 43

  1. Karafet, T. M., Osipova, L. P., Gubina, M. A., Posukh, O. L., Zegura, S. L. & Hammer, M. F. High levels of Y chromosome differentiation among native Siberian populations and the genetic signature of a boreal hunter-gatherer way of life. Hum. Biol. 74, 761–789 (2002). · DOI · Paper page
  2. Derenko, M. V., Grzybowski, T., Malyarchuk, B. A., Dambueva, I. K., Denisova, G. A., Czarny, J. et al. Diversity of mitochondrial DNA lineages in South Siberia. Ann. Hum. Genet. 67, 391–411 (2003). · DOI
  3. Yao, Y. G., Kong, Q. P., Wang, C. Y., Zhu, C. L. & Zhang, Y. P. Different matrilineal contributions to genetic structure of ethnic groups in the Silk road region in China. Mol. Biol. Evol. 21, 2265–2280 (2004). · DOI
  4. Xue, Y., Zerjal, T., Bao, W., Zhu, S., Shu, Q., Xu, J. et al. Male demography in East Asia: a north-south contrast in human population expansion times. Genetics 172, 2431–2439 (2006). · DOI
  5. Derenko, M., Malyarchuk, B., Grzybowski, T., Denisova, G., Dambueva, I., Perkova, M. et al. Phylogeographic analysis of mitochondrial DNA in northern Asian populations. Am. J. Hum. Genet. 81, 1025–1041 (2007). · DOI
  6. Zhong, H., Shi, H., Qi, X. B., Duan, Z. Y., Tan, P. P., Jin, L. et al. Extended Y chromosome investigation suggests postglacial migrations of modern humans into East Asia via the northern route. Mol. Biol. Evol. 28, 717–727 (2011). · DOI · Paper page
  7. Underhill, P. A., Passarino, G., Lin, A. A., Shen, P., Mirazon Lahr, M., Foley, R. A. et al. The phylogeography of Y chromosome binary haplotypes and the origins of modern human populations. Ann. Hum. Genet. 65 (Part 1), 43–62 (2001). · DOI
  8. Comas, D., Calafell, F., Mateu, E., Perez-Lezaun, A., Bosch, E., Martínez-Arias, R. et al. Trading genes along the silk road: mtDNA sequences and the origin of central Asian populations. Am. J. Hum. Genet. 63, 1824–1838 (1998). · DOI · Paper page
  9. Xu, S., Huang, W., Qian, J. & Jin, L. Analysis of genomic admixture in Uyghur and its implication in mapping strategy. Am. J. Hum. Genet. 82, 883–894 (2008). · DOI
  10. Lalueza-Fox, C., Sampietro, M. L., Gilbert, M. T., Castri, L., Facchini, F., Pettener, D. et al. Unravelling migrations in the steppe: mitochondrial DNA sequences from ancient central Asians. Proc. Biol. Sci. 271, 941–947 (2004). · DOI
  11. Mooder, K. P., Schurr, T. G., Bamforth, F. J., Bazaliiski, V. I. & Savel’ev, N. A. Population affinities of Neolithic Siberians: a snapshot from prehistoric Lake Baikal. Am. J. Phys. Anthropol. 129, 349–361 (2006). · DOI
  12. Keyser, C., Bouakaze, C., Crubézy, E., Nikolaev, V. G., Montagnon, D., Reis, T. et al. Ancient DNA provides new insights into the history of south Siberian Kurgan people. Hum Genet. 126, 395–410 (2009). · DOI · Paper page
  13. Li, C., Li, H., Cui, Y., Xie, C., Cai, D., Li, W. et al. Evidence that a West-East admixed population lived in the Tarim Basin as early as the early Bronze Age. BMC Biol. 8, 15 (2010). · DOI · Paper page
  14. Wells, R. S., Yuldasheva, N., Ruzibakiev, R., Underhill, P. A., Evseeva, I., Blue-Smith, J. et al. The Eurasian heartland: a continental perspective on Y chromosome diversity. Proc. Natl Acad. Sci. USA 98, 10244–10249 (2001). · DOI · Paper page
  15. Bortolini, M. C., Salzano, F. M., Thomas, M. G., Stuart, S., Nasanen, S. P., Bau, C. H. et al. Y-chromosome evidence for differing ancient demographic histories in the Americas. Am. J. Hum. Genet. 73, 524–539 (2003). · DOI · Paper page
  16. Seielstad, M., Yuldasheva, N., Singh, N., Underhill, P., Oefner, P., Shen, P. et al. A novel Y-chromosome variant puts an upper limit on the timing of first entry into the Americas. Am. J. Hum. Genet. 73, 700–705 (2003). · DOI · Paper page
  17. Cinnioglu, C., King, R., Kivisild, T., Kalfoglu, E., Atasoy, S., Cavalleri, G. L. et al. Excavating Y-chromosome haplotype strata in Anatolia. Hum. Genet. 114, 127–148 (2004).
  18. Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L. & Stoneking, M. Mating patterns amongst Siberian reindeer herders: inferences from mtDNA and Y-chromosomal analyses. Am. J. Phys. Anthropol. 133, 1013–1027 (2007). · DOI
  19. Zegura, S. L., Karafet, T. M., Zhivotovsky, L. A. & Hammer, M. F. High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol. Biol. Evol. 21, 164–175 (2004). · DOI
  20. Semino, O., Passarino, G., Oefner, P. J., Lin, A. A., Arbuzova, S., Beckman, L. E. et al. The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science 290, 1155–1159 (2000). · DOI
  21. Underhill, P. A., Myres, N. M., Rootsi, S., Metspalu, M., Zhivotovsky, L. A., King, R. J. et al. Separating the post-Glacial coancestry of European and Asian Y chromosomes within haplogroup R1a. Eur. J. Hum. Genet. 18, 479–484 (2010). · DOI · Paper page
  22. Myres, N. M., Rootsi, S., Lin, A. A., Järve, M., King, R. J., Kutuev, I. et al. A major Y-chromosome haplogroup R1b Holocene era founder effect in Central and Western Europe. Eur. J. Hum. Genet. 19, 95–101 (2011). · DOI · Paper page
  23. Derenko, M., Malyarchuk, B., Denisova, G., Wozniak, M., Dambueva, I., Dorzhu, C. et al. Contrasting patterns of Y chromosome variation in South Siberian populations from Baikal and Altay-Sayan regions. Hum. Genet. 118, 591–604 (2006). · DOI
  24. Sengupta, S., Zhivotovsky, L. A., King, R., Mehdi, S. Q., Edmonds, C. A., Chow, C. E. et al. Polarity and temporality of high-resolution Y chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of central Asian pastoralists. Am. J. Hum. Genet. 78, 202–221 (2006). · DOI · Paper page
  25. Cruciani, F., Santolamazza, P., Shen, P., Macaulay, V., Moral, P., Olckers, A. et al. A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes. Am. J.Hum. Genet. 70, 1197–1214 (2002). · DOI
  26. Balaresque, P., Bowden, G. R., Adams, S. M., Leung, H. Y., King, T. E., Rosser, Z. H. et al. A predominantly neolithic origin for European paternal lineages. PLoS Biol. 8, e1000285 (2010). · DOI · Paper page
  27. Kharkov, V. N. Y Chromosome Structure in Populations of Siberia. PhD thesis (Research Institute of Medical Genetics, Tomsk, 2005) (in Russian).
  28. Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., Danilova, A. P., Protod’jakonov, A. P. & Stoneking, M. Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts. Hum. Genet. 120, 334–353 (2006). · DOI
  29. Nasidze, I., Quinque, D., Dupanloup, I., Cordaux, R., Kokshunova, L. & Stoneking, M. Genetic evidence for the Mongolian ancestry of Kalmyks. Am. J. Phys. Anthropol. 128, 846–854 (2005). · DOI · Paper page
  30. Karafet, T. M., Mendez, F. L., Meilerman, M. B., Underhill, P. A., Zegura, S. L. & Hammer, M. F. New binary polymorphisms reshape and increase resolution of the human Y-chromosomal haplogroup tree. Genome Res. 18, 830–838 (2008). · DOI · Paper page
  31. Bandelt, H.- J., Macaulay, V. & Richards, M. Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA. Mol. Phylogenet. Evol. 16, 8–28 (2000). · DOI
  32. Zhivotovsky, L. A., Underhill, P. A., Cinnioglu, C., Kayser, M., Morar, B., Kivisild, T. et al. The effective mutation rate at Y chromosome short tandem repeats, with application to human population-divergence time. Am. J. Hum. Genet. 74, 50–61 (2004). · DOI
  33. Zhivotovsky, L. A. Estimating divergence time with the use of microsatellite genetic distances: impacts of population growth and gene flow. Mol. Biol. Evol 18, 700–709 (2001). · DOI
  34. Regueiro, M., Cadenas, A. M., Gayden, T., Underhill, P. A. & Herrera, R. J. Iran: tricontinental nexus for Y-chromosome driven migration. Hum. Hered. 61, 132–143 (2006). · DOI
  35. Järve, M., Zhivotovsky, L. A., Rootsi, S., Help, H., Rogaev, E. I., Khusnutdinova, E. K. et al. Decreased rate of evolution in Y chromosome STR loci of increased size of the repeat unit. PLoS One. 4, e7276 (2009). · DOI
  36. Mirabal, S., Regueiro, M., Cadenas, A. M., Cavalli-Sforza, L. L., Underhill, P. A., Verbenko, D. A. et al. Y-chromosome distribution within the geo-linguistic landscape of northwestern Russia. Eur. J. Hum. Genet. 17, 1260–1273 (2009). · DOI
  37. Malhi, R. S., Gonzalez-Oliver, A., Schroeder, K. B., Kemp, B. M., Greenberg, J. A., Dobrowski, S. Z. et al. Distribution of Y chromosomes among native North Americans: a study of Athapaskan population history. Am. J. Phys. Anthropol. 137, 412–424 (2008). · DOI
  38. Tamm, E., Kivisild, T., Reidla, M., Metspalu, M., Smith, D. G., Mulligan, C. J. et al. Beringian standstill and spread of Native American founders. PLoS One. 2, e829 (2007). · DOI · Paper page
  39. Fagundes, N. J., Kanitz, R. & Bonatto, S. L. A reevaluation of the Native American mtDNA genome diversity and its bearing on the models of early colonization of Beringia. PLoS One. 3, e3157 (2008). · DOI
  40. Perego, U. A., Achilli, A., Angerhofer, N., Accetturo, M., Pala, M., Olivieri, A. et al. Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups. Curr. Biol. 19, 1–8 (2009). · DOI · Paper page
  41. Perego, U. A., Angerhofer, N., Pala, M., Olivieri, A., Lancioni, H., Kashani, B. H. et al. The initial peopling of the Americas: a growing number of founding mitochondrial genomes from Beringia. Genome Res. 20, 1174–1179 (2010). · DOI
  42. Karafet, T., Zegura, S. L., Vuturo-Brady, J., Posukh, O., Osipova, L., Wiebe, V. et al. Y chromosome markers and trans-Bering Strait dispersals. Am. J. Phys. Anthropol. 102, 301–314 (1997). · DOI
  43. Lell, J. T., Brown, M. D., Schurr, T. G., Sukernik, R. I., Starikovskaya, Y. B., Torroni, A. et al. Y chromosome polymorphisms in Native American and Siberian populations: identification of Native American Y chromosome haplotypes. Hum. Genet. 100, 536–543 (1997). · DOI · Paper page

Cited by

Metadata

Authors
Malyarchuk, B., Derenko, M., Denisova, G., Maksimov, A., Wozniak, M., Grzybowski, T., Dambueva, I., & Zakharov, I.
Venue
Journal of Human Genetics
Published
2011-06-16
Volume
56
Issue
8
Pages
583-588
ISSN
  • 1434-5161
  • 1435-232X
Cited by
51
References
1
Language
en

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review