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A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1
Open accessAbstract
We have constructed a collection of single-gene deletion mutants for all dispensable genes of the soil bacterium Acinetobacter baylyi ADP1. A total of 2594 deletion mutants were obtained, whereas 499 (16%) were not, and are therefore candidate essential genes for life on minimal medium. This essentiality data set is 88% consistent with the Escherichia coli data set inferred from the Keio mutant collection profiled for growth on minimal medium, while 80% of the orthologous genes described as essential in Pseudomonas aeruginosa are also essential in ADP1. Several strategies were undertaken to investigate ADP1 metabolism by (1) searching for discrepancies between our essentiality data and current metabolic knowledge, (2) comparing this essentiality data set to those from other organisms, (3) systematic phenotyping of the mutant collection on a variety of carbon sources (quinate, 2-3 butanediol, glucose, etc.). This collection provides a new resource for the study of gene function by forward and reverse genetic approaches and constitutes a robust experimental data source for systems biology approaches.
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Cites
Construction of Escherichia coli K‐12 in‐frame, single‐gene knockout mutants: the Keio collection
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K. A., Tomita, M., Wanner, B. L., & Mori, H. (2006) · Molecular Systems Biology · doi:10.1038/msb4100050 · Cited by 7,858
Cited by
Albalat, R., & Cañestro, C. (2016) · Nature Reviews Genetics · doi:10.1038/nrg.2016.39 · Cited by 775
Boyer, F., Fichant, G., Berthod, J., Vandenbrouck, Y., & Attree, I. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-104 · Cited by 580
DEG 5.0, a database of essential genes in both prokaryotes and eukaryotes
Zhang, R., & Lin, Y. (2009) · Nucleic Acids Research · doi:10.1093/nar/gkn858 · Cited by 503
Vallenet, D., Calteau, A., Dubois, M., Amours, P., Bazin, A., Beuvin, M., Burlot, L., Bussell, X., Fouteau, S., Gautreau, G., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gkz926 · Cited by 346
Self-citationComparative Analysis of Acinetobacters: Three Genomes for Three Lifestyles
Vallenet, D., Nordmann, P., Barbe, V., Poirel, L., Mangenot, S., Bataille, E., Dossat, C., Gas, S., Kreimeyer, A., Lenoble, P., et al. (2008) · PLoS ONE · doi:10.1371/journal.pone.0001805 · Cited by 314
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Metadata
- Authors
- de Berardinis, V., Vallenet, D., Castelli, V., Besnard, M., Pinet, A., Cruaud, C., Samair, S., Lechaplais, C., Gyapay, G., Richez, C., Durot, M., Kreimeyer, A., Le Fèvre, F., Schächter, V., Pezo, V., Döring, V., Scarpelli, C., Médigue, C., Cohen, G. N., Marlière, P., Salanoubat, M., & Weissenbach, J.
- Venue
- Molecular Systems Biology
- Published
- 2008-01
- Volume
- 4
- Issue
- 1
- Pages
- 174-174
- ISSN
- 1744-4292 (ISSN-L)
- OpenAlex
- W2111906329
- Cited by
- 302
- References
- 1
- FWCI
- 10.37
- Type
- journal article
- Language
- en
- Open access
- gold
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- de Berardinis, V., Vallenet, D., Castelli, V., Besnard, M., Pinet, A., Cruaud, C., Samair, S., Lechaplais, C., Gyapay, G., Richez, C., Durot, M., Kreimeyer, A., Le Fèvre, F., Schächter, V., Pezo, V., Döring, V., Scarpelli, C., Médigue, C., Cohen, G. N., . . . Weissenbach, J. (2008). A complete collection of single‐gene deletion mutants of Acinetobacter baylyi ADP1. Molecular Systems Biology. https://doi.org/10.1038/msb.2008.10
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