The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Systems biology approaches identify ATF3 as a negative regulator of Toll-like receptor 4
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Cites
Cytoscape: A software Environment for integrated models of biomolecular interaction networks
Shannon, P., Markiel, A., Ozier, O., Baliga, N. S., Wang, J. T., Ramage, D., Amin, N., Schwikowski, B., & Ideker, T. (2003) · Genome Research · doi:10.1101/gr.1239303 · Cited by 51,888
Computational systems biology.
Kitano, H. (2002) · Nature · doi:10.1038/nature01254 · Cited by 2,209
Cawley, S., Bekiranov, S., Ng, H. H., Kapranov, P., Sekinger, E. A., Kampa, D., Piccolboni, A., Sementchenko, V., Cheng, J., Williams, A. J., et al. (2004) · Cell · doi:10.1016/s0092-8674(04)00127-8 · Cited by 1,095
Bonneau, R., Reiss, D. J., Shannon, P., Facciotti, M., Hood, L., Baliga, N. S., & Thorsson, V. (2006) · Genome Biology · doi:10.1186/gb-2006-7-5-r36 · Cited by 510
Yang, Q., Lishanski, A., Yang, W., Hatcher, S., Seet, H., & Gregg, J. P. (2003) · Genome Research · doi:10.1101/gr.997703 · Cited by 136
Research works printed but not linked: 22
- Kawai, T. & Akira, S. Pathogen recognition with Toll-like receptors. Curr. Opin. Immunol. 17, 338–344 (2005) · DOI
- Aderem, A. Systems biology: its practice and challenges. Cell 121, 511–513 (2005) · DOI · Paper page
- Suthram, S., Sittler, T. & Ideker, T. The plasmodium protein network diverges from those of other eukaryotes. Nature 438, 108–112 (2005) · DOI
- Royet, J., Reichhart, J. M. & Hoffmann, J. A. Sensing and signaling during infection in Drosophila. Curr. Opin. Immunol. 17, 11–17 (2005) · DOI
- Takeda, K. & Akira, S. TLR signaling pathways. Semin. Immunol. 16, 3–9 (2004) · DOI
- Nau, G. J. et al. Human macrophage activation programs induced by bacterial pathogens. Proc. Natl Acad. Sci. USA 99, 1503–1508 (2002) · DOI · Paper page
- Werner, T. Target gene identification from expression array data by promoter analysis. Biomol. Eng. 17, 87–94 (2001) · DOI
- Mayr, B. & Montminy, M. Transcriptional regulation by the phosphorylation-dependent factor CREB. Nature Rev. Mol. Cell Biol. 2, 599–609 (2001) · DOI · Paper page
- Yan, C., Lu, D., Hai, T. & Boyd, D. D. Activating transcription factor 3, a stress sensor, activates p53 by blocking its ubiquitination. EMBO J. 24, 2425–2435 (2005) · DOI
- Ishiguro, T. et al. Identification of genes differentially expressed in B16 murine melanoma sublines with different metastatic potentials. Cancer Res. 56, 875–879 (1996)
- Ishiguro, T., Nagawa, H., Naito, M. & Tsuruo, T. Inhibitory effect of ATF3 antisense oligonucleotide on ectopic growth of HT29 human colon cancer cells. Jpn. J. Cancer Res. 91, 833–836 (2000) · DOI
- Kawauchi, J. et al. Transcriptional repressor activating transcription factor 3 protects human umbilical vein endothelial cells from tumor necrosis factor-α-induced apoptosis through down-regulation of p53 transcription. J. Biol. Chem. 277, 39025–39034 (2002) · DOI
- Hartman, M. G. et al. Role for activating transcription factor 3 in stress-induced beta-cell apoptosis. Mol. Cell. Biol. 24, 5721–5732 (2004) · DOI · Paper page
- Thorsson, V. T., Hörnquist, M., Siegel, A. F. & Hood, L. Reverse engineering galactose regulation in yeast through model selection. Stat. Appl. Gen. Mol. Biol. 4, 1–24 (2005)
- Hua, B. et al. A splice variant of stress response gene ATF3 counteracts NF-κB-dependent anti-apoptosis through inhibiting recruitment of CREB-binding protein/p300 coactivator. J. Biol. Chem. 281, 1620–1629 (2006) · DOI
- Furumatsu, T. et al. Sox9 and p300 cooperatively regulate chromatin-mediated transcription. J. Biol. Chem. 280, 35203–35208 (2005) · DOI
- Gilchrist, M., McCauley, S. D. & Befus, A. D. Expression, localization, and regulation of NOS in human mast cell lines: effects on leukotriene production. Blood 104, 462–469 (2004) · DOI
- Thijs, G. et al. INCLUSive: INtegrated Clustering, Upstream sequence retrieval and motif Sampling. Bioinformatics 18, 331–332 (2002) · DOI
- Frith, M. C. et al. Detection of functional DNA motifs via statistical over-representation. Nucleic Acids Res. 32, 1372–1381 (2004) · DOI
- Matys, V. et al. TRANSFAC: transcriptional regulation, from patterns to profiles. Nucleic Acids Res. 31, 374–378 (2003) · DOI
- Lewis, S. E. et al. Apollo: a sequence annotation editor. Genome Biol. 3, research0082 (2002) · DOI
- Kim, T. H. et al. A high-resolution map of active promoters in the human genome. Nature 436, 876–880 (2005) · DOI · Paper page
Cited by
Pattern Recognition Receptors and Inflammation
Takeuchi, O., & Akira, S. (2010) · Cell · doi:10.1016/j.cell.2010.01.022 · Cited by 8,895
Macrophages, inflammation, and insulin resistance
Olefsky, J. M., & Glass, C. K. (2010) · Annual Review of Physiology · doi:10.1146/annurev-physiol-021909-135846 · Cited by 2,733
Integration of biological networks and gene expression data using Cytoscape
Cline, M. S., Smoot, M., Cerami, E., Kuchinsky, A., Landys, N., Workman, C., Christmas, R., Avila-Campilo, I., Creech, M., Gross, B., et al. (2007) · Nature Protocols · doi:10.1038/nprot.2007.324 · Cited by 2,507
Transcriptional regulation of macrophage polarization: enabling diversity with identity
Lawrence, T., & Natoli, G. (2011) · Nature Reviews Immunology · doi:10.1038/nri3088 · Cited by 2,284
Hammond, T. R., Dufort, C., Dissing-Olesen, L., Giera, S., Young, A., Wysoker, A., Walker, A. J., Segel, M., Nemesh, J., Saunders, A., et al. (2018) · doi:10.1101/406140 · Cited by 2,225
Metadata
- Authors
- Gilchrist, M., Thorsson, V., Li, B., Rust, A. G., Korb, M., Kennedy, K., Hai, T., Bolouri, H., & Aderem, A.
- Venue
- Nature
- Published
- 2006-05-11
- Volume
- 441
- Issue
- 7090
- Pages
- 173-178
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2145221987
- Cited by
- 803
- References
- 5
- FWCI
- 15.91
- Type
- journal article
- Language
- en
- Update notices
- erratum (2008-02-21)
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- www.springer.com/tdm (vor)
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
