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The genome sequence of Atlantic cod reveals a unique immune system
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“More than 30% of the contig edges contained an STR and nearly a quarter of the gaps in scaffolds were flanked by STRs (Supplementary Note 7 in (66)), indicating that these STRs strongly affected the successful assembly into more contiguous genomic regions.”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [66]
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“More than 30% of the contig edges contained an STR and nearly a quarter of the gaps in scaffolds were flanked by STRs (Supplementary Note 7 in (66)), indicating that these STRs strongly affected the successful assembly into more contiguous genomic regions.”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [66]
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“The first de novo assembly (gadMor1) of the Atlantic cod genome was based on 454 sequencing data (66) and resulted in a fragmented assembly with many gaps.”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [66]
In the citing paper
“These genes were not properly assembled in the first version of the Atlantic cod genome (66), but were in the second version created with PacBio reads (62,109).”
From Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases (2019) · cites this paper as [66]
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Research works printed but not linked: 30
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Metadata
- Authors
- Star, B., Nederbragt, A. J., Jentoft, S., Grimholt, U., Malmstrøm, M., Gregers, T. F., Rounge, T. B., Paulsen, J., Solbakken, M. H., Sharma, A., Wetten, O. F., Lanzén, A., Winer, R., Knight, J., Vogel, J.-H., Aken, B., Andersen, Ø., Lagesen, K., Tooming-Klunderud, A., Edvardsen, R. B., Tina, K. G., Espelund, M., Nepal, C., Previti, C., Karlsen, B. O., Moum, T., Skage, M., Berg, P. R., Gjøen, T., Kuhl, H., Thorsen, J., Malde, K., Reinhardt, R., Du, L., Johansen, S. D., Searle, S., Lien, S., Nilsen, F., Jonassen, I., Omholt, S. W., Stenseth, N. C., & Jakobsen, K. S.
- Venue
- Nature
- Published
- 2011-08-10
- Volume
- 477
- Issue
- 7363
- Pages
- 207-210
- ISSN
- 0028-0836
- 1476-4687
- PMC
- PMC3537168
- Cited by
- 741
- References
- 0
- Language
- en
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