Protein activity regulation by conformational entropy
Cited by (546)
Items 101–200 of 546
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- Conformational Recognition of an Intrinsically Disordered ProteinKrieger, James M., Fusco, Giuliana, Lewitzky, Marc, Simister, Philip C., Marchant, Jan, Camilloni, Carlo, Feller, Stephan M., De Simone, Alfonso · 2014 · Biophysical Journal
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- Dual allosteric activation mechanisms in monomeric human glucokinaseA. Carl Whittington, Mioara Larion, Joseph M. Bowler, Kristen M. Ramsey, Rafael Brüschweiler, Brian G. Miller · 2015 · Proceedings of the National Academy of Sciences
- Regulation of Protein Activity and Cellular Functions Mediated by Molecularly Evolved Nucleic AcidsJie Tan, Mengmeng Zhao, Jie Wang, Zhihao Li, Ling Liang, Liqin Zhang, Quan Yuan, Weihong Tan · 2018 · Angewandte Chemie International Edition
- Energy Transport across Interfaces in Biomolecular SystemsDavid M. Leitner, Hari Datt Pandey, Korey M. Reid · 2019 · The Journal of Physical Chemistry B
- Entropy–Entropy Compensation between the Protein, Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand Binding to Galectin-3CJohan Wallerstein, Vilhelm Ekberg, Majda Misini Ignjatović, Rohit Kumar, Octav F. Caldararu, Kristoffer Peterson, Sven Wernersson, Ulrika Brath, Hakon Leffler, Esko Oksanen et al. · 2021 · JACS Au
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- Advances in uncovering the mechanisms of macromolecular conformational entropyStephanie A. M. Wankowicz, James S. Fraser · 2025 · Nature Chemical Biology
- A Universal Pattern in the Percolation and Dissipation of Protein Structural PerturbationsNandakumar Rajasekaran, Ashok Sekhar, Athi N. Naganathan · 2017 · The Journal of Physical Chemistry Letters
- Programming Biomimetically Confined Aptamers with DNA FrameworksXiuhai Mao, Mengmeng Liu, Lei Yan, Mengying Deng, Fan Li, Min Li, Fei Wang, Jiang Li, Lihua Wang, Yang Tian et al. · 2020 · ACS Nano
- Globally correlated conformational entropy underlies positive and negative cooperativity in a kinase’s enzymatic cycleYingjie Wang, Manu Veliparambil Subrahmanian, Jonggul Kim, Geoffrey Li, Lalima Gagan Ahuja, Phillip C. Aoto, Susan Serota Taylor, Gianluigi Veglia · 2019 · Nature Communications
- Structure and Dynamics of Phospholipid Nanodiscs from All-Atom and Coarse-Grained SimulationsAnanya Debnath, Lars V. Schäfer · 2015 · The Journal of Physical Chemistry B
- Two Differential Binding Mechanisms of FG-Nucleoporins and Nuclear Transport ReceptorsPiau Siong Tan, Iker Valle Aramburu, Davide Mercadante, Swati Tyagi, Aritra Chowdhury, Daniel Spitz, Sarah L. Shammas, Frauke Gräter, Edward A. Lemke · 2018 · Cell Reports
- How the Local Environment of Functional Sites Regulates Protein FunctionKarine Mazmanian, Karen Sargsyan, Carmay Lim · 2020 · Journal of the American Chemical Society
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- DNA-Based Nanodevices Controlled by Purely Entropic Linker DomainsDavide Mariottini, Andrea Idili, Minke A. D. Nijenhuis, Tom F. A. de Greef, Francesco Ricci · 2018 · Journal of the American Chemical Society
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- Dancing through Life: Molecular Dynamics Simulations and Network-Centric Modeling of Allosteric Mechanisms in Hsp70 and Hsp110 Chaperone ProteinsGabrielle Stetz, Gennady M. Verkhivker · 2015 · PLoS ONE
- Probing Allosteric Inhibition Mechanisms of the Hsp70 Chaperone Proteins Using Molecular Dynamics Simulations and Analysis of the Residue Interaction NetworksGabrielle Stetz, Gennady M. Verkhivker · 2016 · Journal of Chemical Information and Modeling
- Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein ComplexesZachary K. Boswell, Michael P. Latham · 2018 · Biochemistry
- New Insights into the Cooperativity and Dynamics of Dimeric EnzymesKe-Wei Chen, Tian‐Yu Sun, Yun‐Dong Wu · 2023 · Chemical Reviews
- Time-Resolved Protein Side-Chain Motions Unraveled by High-Resolution Relaxometry and Molecular Dynamics Simulations.Samuel F. Cousin, P. Kadeřávek, Nicolas Bolik-Coulon, Yi-Na Gu, Cyril Charlier, L. Carlier, L. Bruschweiler-Li, T. Marquardsen, Jean-Max Tyburn, R. Brüschweiler et al. · 2018 · Journal of the American Chemical Society
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- NMR and computational methods for molecular resolution of allosteric pathways in enzyme complexesKyle W. East, Erin Skeens, Jennifer Y. Cui, Helen B Belato, Brandon P. Mitchell, Rohaine V. Hsu, Víctor S. Batista, Giulia Palermo, George P. Lisi · 2019 · Biophysical Reviews
- The Structure of the Tiam1 PDZ Domain/ Phospho-Syndecan1 Complex Reveals a Ligand Conformation that Modulates Protein DynamicsXu Liu, Tyson R. Shepherd, Ann M. Murray, Zhen Xu, Ernesto J. Fuentes · 2013 · Structure
- “Invisible” Conformers of an Antifungal Disulfide Protein Revealed by Constrained Cold and Heat Unfolding, CEST‐NMR Experiments, and Molecular Dynamics CalculationsÁdám Fizil, Zoltán Gáspári, Terézia Barna, Florentine Marx, Gyula Batta · 2015 · Chemistry - A European Journal
- Entropy and Information within Intrinsically Disordered Protein RegionsIva Pritišanac, Robert McCoy Vernon, Alan M Moses, Julie Deborah Forman-Kay · 2019 · Entropy
- Molecular origins of binding affinity: seeking the Archimedean pointPanagiotis L. Kastritis, Alexandre M. J. J. Bonvin · 2013 · Current Opinion in Structural Biology
- Correlation as a Determinant of Configurational Entropy in Supramolecular and Protein SystemsAndrew T. Fenley, Benjamin J. Killian, Vladimir Hnizdo, Adam Fedorowicz, Dan S. Sharp, Michael K. Gilson · 2014 · The Journal of Physical Chemistry B
- Allosteric activation of T cell antigen receptor signaling by quaternary structure relaxationAnna-Lisa Lanz, Giulia Masi, Nicla Porciello, André Cohnen, Deborah Cipria, Dheeraj Prakaash, Štefan Bálint, Roberto Raggiaschi, Donatella Galgano, David K. Cole et al. · 2021 · Cell Reports
- Conformational Destabilization of Immunoglobulin G Increases the Low pH Binding Affinity with the Neonatal Fc ReceptorBenjamin T. Walters, Pernille Foged Jensen, Vincent Larraillet, Kevin Lin, Thomas W. Patapoff, Tilman Schlothauer, Kasper Dyrberg Rand, Jennifer Zhang · 2015 · Journal of Biological Chemistry
- Recent advances in measuring the kinetics of biomolecules by NMR relaxation dispersion spectroscopyDavid Ban, Colin A. Smith, Bert L. de Groot, Christian Griesinger, Donghan Lee · 2017 · Archives of Biochemistry and Biophysics
- Insight into the specificity and severity of pathogenic mechanisms associated with missense mutations through experimental and structural perturbation analysesEncarnación Medina‐Carmona, Isabel Betancor-Fernández, Jaime Santos, Noel Mesa‐Torres, Silvia Grottelli, Cristina Batlle, Athi N. Naganathan, Elisa Oppici, Barbara Cellini, Salvador Ventura et al. · 2018 · Human Molecular Genetics
- Solvent effects on ligand binding to a serine proteaseSrinivasa M. Gopal, Fabian Klumpers, Christian Herrmann, Lars V. Schäfer · 2017 · Physical Chemistry Chemical Physics
- Ligand Strain and Its Conformational Complexity Is a Major Factor in the Binding of Cyclic Dinucleotides to STING ProteinMiroslav Smola, Ondrej Gutten, Milan Dejmek, Milan Kožíšek, Thomas Evangelidis, Zahra Aliakbar Tehrani, Barbora Novotná, Radim Nencka, Gabriel Birkuš, Lubomı́r Rulı́šek et al. · 2021 · Angewandte Chemie International Edition
- PARENT: A Parallel Software Suite for the Calculation of Configurational Entropy in Biomolecular SystemsMarkus Fleck, Anton A. Polyansky, Bojan Žagrović · 2016 · Journal of Chemical Theory and Computation
- Effects of Cyclization on Peptide Backbone DynamicsConan K. L. Wang, Joakim E. Swedberg, Susan E. Northfield, David J. Craik · 2015 · The Journal of Physical Chemistry B
- Scaling of Rates of Vibrational Energy Transfer in Proteins with Equilibrium Dynamics and EntropyKorey M. Reid, Takahisa Yamato, David M. Leitner · 2018 · The Journal of Physical Chemistry B
- Structure and dynamics conspire in the evolution of affinity between intrinsically disordered proteinsPer Jemth, Elin Karlsson, Beat Vögeli, Brenda Guzovsky, Eva Andersson, Greta Hultqvist, Jakob Dogan, Peter Güntert, Roland Riek, N. Celestine · 2018 · Science Advances
- Towards a true protein movie: A perspective on the potential impact of the ensemble-based structure determination using exact NOEsBeat Vögeli, Julien Orts, Dean Strotz, N. Celestine, Martina Minges, Marielle Aulikki Wälti, Peter Güntert, Roland Riek · 2014 · Journal of Magnetic Resonance
- Concurrent Increases and Decreases in Local Stability and Conformational Heterogeneity in Cu, Zn Superoxide Dismutase Variants Revealed by Temperature-Dependence of Amide Chemical ShiftsColleen Doyle, Jessica Rumfeldt, Helen R. Broom, Ashok Sekhar, Lewis E. Kay, Elizabeth M. Meiering · 2016 · Biochemistry
- Water‐Restructuring Mutations Can Reverse the Thermodynamic Signature of Ligand Binding to Human Carbonic AnhydraseJerome M. Fox, Kyungtae Kang, Madhavi Sastry, Woody Sherman, Banumathi Sankaran, Peter H. Zwart, George M. Whitesides · 2017 · Angewandte Chemie International Edition
- Structure of a human IgA1 Fab fragment at 1.55 Å resolution: potential effect of the constant domains on antigen-affinity modulationAgustín Correa, Felipe Trajtenberg, Gonzalo Obal, Otto Pritsch, Guillermo Dighiero, Pablo Oppezzo, Alejandro Buschiazzo · 2013 · Acta Crystallographica Section D Biological Crystallography
- Max Bergmann lecture Protein epitope mimetics in the age of structural vaccinologyJohn A. Robinson · 2013 · Journal of Peptide Science
- Colocalization of Fast and Slow Timescale Dynamics in the Allosteric Signaling Protein CheYLeanna R. McDonald, Matthew J. Whitley, Joshua A. Boyer, Andrew L. Lee · 2013 · Journal of Molecular Biology
- Recent advances in Major Histocompatibility Complex (MHC) class I antigen presentation: Plastic MHC molecules and TAPBPR-mediated quality controlAndy van Hateren, A.G. Bailey, Tim J Elliott · 2017 · F1000Research
- Site-to-site interdomain communication may mediate different loss-of-function mechanisms in a cancer-associated NQO1 polymorphismEncarnación Medina‐Carmona, José L. Neira, EDUARDO C. SALIDO, Julian E. Fuchs, Rogelio Palomino‐Morales, David J. Timson, Angel Luis Pey · 2017 · Scientific Reports
- Drug Resistance Mutations Alter Dynamics of Inhibitor-Bound HIV-1 ProteaseYufeng Cai, Wazo Myint, Janet L. Paulsen, Celia A. Schiffer, Rieko Ishima, Neşe Kurt Yılmaz · 2014 · Journal of Chemical Theory and Computation
- Thermodynamic Switch in Binding of Adhesion/Growth Regulatory Human Galectin-3 to Tumor-Associated TF Antigen (CD176) and MUC1 GlycopeptidesMaría C. Rodríguez, Svetlana Yegorova, Jean‐Philippe Pitteloud, Anais E. Chavaroche, Sabine André, Ana Ardá, Dmitriy Minond, Jesús Jiménez‐Barbero, Hans‐Joachim Gabius, Mare Čudić · 2015 · Biochemistry
- Solution NMR views of dynamical ordering of biomacromoleculesTeppei Ikeya, David Ban, Donghan Lee, Yutaka Ito, Koichi Kato, Christian Griesinger · 2017 · Biochimica et Biophysica Acta (BBA) - General Subjects
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- Structural Analysis of Biomolecules through a Combination of Mobility Capillary Electrophoresis and Mass SpectrometryMuyi He, Pan Luo, Jie Hong, Xiaofeng Wang, Haimei Wu, Rongkai Zhang, Feng Qu, Ye Xiang, Wei Liang Xu · 2019 · ACS Omega
- Macromolecular crowding effects on protein dynamicsNilimesh Das, Tanmoy Khan, Bisal Halder, Shreya Ghosh, Pratik Sen · 2024 · International Journal of Biological Macromolecules
- Conformational Entropies and Order Parameters: Convergence, Reproducibility, and TransferabilitySamuel Genheden, Mikael Akke, Ulf Ryde · 2013 · Journal of Chemical Theory and Computation
- A multiconformer ligand model of inhibitor 53W bound to CREB binding protein bromodomainBrandi M. Hudson, Gydo C. P. van Zundert, D.A. Keedy, Rasmus Fonseca, Amélie Héliou, Pooja Suresh, Kenneth W. Borrelli, Tyler Day, James S. Fraser, Henry van den Bedem · 2018 · Worldwide Protein Data Bank
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