Charting a dynamic DNA methylation landscape of the human genome

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Items 401–500 of 1,000

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    Liming Liang, William Cookson · 2014 · Human Molecular Genetics
  2. Genome-wide CpG island methylation and intergenic demethylation propensities vary among different tumor sites
    Seung‐Tae Lee, Joseph Leo Wiemels · 2015 · Nucleic Acids Research
  3. Modeling complex patterns of differential DNA methylation that associate with gene expression changes
    Christopher Schlosberg, Nathan D. VanderKraats, John R. Edwards · 2017 · Nucleic Acids Research
  4. DNA methylation and gene expression alterations in zebrafish early-life stages exposed to the antibacterial agent triclosan
    Elodie Falisse, Bertrand Ducos, Peter A. Stockwell, Ian M. Morison, Aniruddha Chatterjee, Frédéric Silvestre · 2018 · Environmental Pollution
  5. The role and molecular mechanism of epigenetics in cardiac hypertrophy
    Hao Chuan Lei, Jiahui Hu, Kaijun Sun, Danyan Xu · 2020 · Heart Failure Reviews
  6. DNA methylome profiling of circulating tumor cells in lung cancer at single base-pair resolution
    Lei Zhao, Xiaohong Wu, Junnian Zheng, Dong Dong · 2021 · Oncogene
  7. Increased methylation at an unexplored glucocorticoid responsive element within exon 1D of NR3C1 gene is related to anxious-depressive disorders and decreased hippocampal connectivity
    Helena Palma‐Gudiel, Aldo Córdova‐Palomera, Cristian Tornador, Carles Falcón, Núria Bargalló, Gustavo Deco, Lourdes Fañanás · 2018 · European Neuropsychopharmacology
  8. Epigenetic remodeling in B-cell acute lymphoblastic leukemia occurs in two tracks and employs embryonic stem cell-like signatures
    Seung‐Tae Lee, Marcus O. Muench, Marina E. Fomin, Jianqiao Xiao, Mi Zhou, Adam J. de Smith, José Ignacio Martín-Subero, Simon Charles Heath, Eugene Andres Houseman, Ritu Roy et al. · 2015 · Nucleic Acids Research
  9. Whole-genome bisulfite sequencing maps from multiple human tissues reveal novel CpG islands associated with tissue-specific regulation
    Isabel Mendizabal, Soojin V. Yi · 2015 · Human Molecular Genetics
  10. DNA methylation and smoking in Korean adults: epigenome-wide association study
    Mi Kyeong Lee, Yoonki Hong, Sunyoung Kim, Stephanie J. London, Woo Jin Kim · 2016 · Clinical Epigenetics
  11. DNA methylation patterns associated with oxidative stress in an ageing population
    Åsa K. Hedman, Mihkel Zilmer, Johan Sundström, Lars Lind, Erik Ingelsson · 2016 · BMC Medical Genomics
  12. Epigenome‐wide association studies in asthma: A systematic review
    Ahmed Edris, Herman T. den Dekker, Erik Melén, Lies Lahousse · 2019 · Clinical & Experimental Allergy
  13. Insights into Epigenome Evolution from Animal and Plant Methylomes
    Soojin V. Yi · 2017 · Genome Biology and Evolution
  14. Network integration and modelling of dynamic drug responses at multi-omics levels
    Nathalie Selevsek, Florian Caiment, Ramona Nudischer, Hans Gmuender, Irina Agarkova, Francis L. Atkinson, Ivo Bachmann, Vanessa Baier, Gal Barel, Chris Bauer et al. · 2020 · Communications Biology
  15. The Comparative Methylome and Transcriptome After Change of Direction Compared to Straight Line Running Exercise in Human Skeletal Muscle
    Mohd Firdaus Maasar, Daniel C. Turner, Piotr P. Gorski, Robert A. E. Seaborne, Juliette A. Strauss, Sam O. Shepherd, Matthew S. Cocks, Nicolas J. Pillon, Juleen Rae Zierath, Andrew Thomas Hulton et al. · 2021 · Frontiers in Physiology
  16. The Role of Cell-Free DNA in Cancer Treatment Decision Making
    András Telekes, Anna Horváth · 2022 · Cancers
  17. Systematic DNA methylation analysis of multiple cell lines reveals common and specific patterns within and across tissues of origin
    Xiaofei Yang, Xiaojian Shao, Lin Gao, Shihua Zhang · 2015 · Human Molecular Genetics
  18. Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin
    Evgenia Ntini, Annita Louloupi, Julia Liz, José M. Muiño, Annalisa Marsico, Ulf Andersson Ørom · 2018 · Nature Communications
  19. Dynamic regulation of epigenetic demethylation by oxygen availability and cellular redox
    Nermina Lamadema, Simon Burr, Alison C. Brewer · 2018 · Free Radical Biology and Medicine
  20. BoostMe accurately predicts DNA methylation values in whole-genome bisulfite sequencing of multiple human tissues
    Luli S. Zou, Michael R. Erdos, D. Leland Taylor, Peter S. Chines, Arushi Varshney, Stephen C.J. Parker, Francis S. Collins, John P. Didion · 2018 · BMC Genomics
  21. Retrotransposition creates sloping shores: a graded influence of hypomethylated CpG islands on flanking CpG sites
    Fiorella Carla Grandi, James M. Rosser, Simon J. Newkirk, Jun Yin, Xiaoling Jiang, Zhuo Xing, Leanne S. Whitmore, Sanum Bashir, Zoltán Ivics, Zsuzsanna Izsvák et al. · 2015 · Genome Research
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    Carlos de la Calle‐Fabregat, Josep Calafell-Segura, Margaux Gardet, Garett Dunsmore, Kevin Mulder, Laura Ciudad, Aymeric Silvin, Joaquim Moreno‐Càceres, Angel Luis Corbí, Cristina Muñoz‐Pinedo et al. · 2024 · Science Advances
  23. The BisPCR2 method for targeted bisulfite sequencing
    Diana L. Bernstein, Vasumathi Kameswaran, John E. Le Lay, Karyn L. Sheaffer, Klaus H. Kaestner · 2015 · Epigenetics & Chromatin
  24. Genotype effects contribute to variation in longitudinal methylome patterns in older people
    Qian Zhang, Riccardo Emilio Marioni, Matthew R. Robinson, Jonathan Higham, Duncan Sproul, Naomi R. Wray, Ian J. Deary, Allan F. McRae, Peter M. Visscher · 2018 · Genome Medicine
  25. Combined effects of genotype and childhood adversity shape variability of DNA methylation across age
    Darina Czamara, Elleke Tissink, Johanna Tuhkanen, Jade Martins, Yvonne Awaloff, Amanda Jane Drake, Batbayar Khulan, Aarno V. Palotie, Sibylle Winter, Charles B. Nemeroff et al. · 2021 · Translational Psychiatry
  26. Identification of DNA methylation changes atcis-regulatory elements during early steps of HSC differentiation using tagmentation-based whole genome bisulfite sequencing
    Daniel B. Lipka, Qi Wang, Nina Cabezas‐Wallscheid, Daniel Klimmeck, Dieter Weichenhan, Carl Herrmann, Amelie Lier, David Brocks, Lisa von Paleske, Simon Renders et al. · 2014 · Cell Cycle
  27. Genome-wide DNA methylation analysis reveals estrogen-mediated epigenetic repression of metallothionein-1 gene cluster in breast cancer
    Rohit R. Jadhav, Zhenqing Ye, Rui Huang, Joseph Liu, Pei-Yin Hsu, Yi-Wen Huang, Letícia Batista Azevedo Rangel, Hung-Cheng Lai, Juan Carlos Roa, Nameer B. Kirma et al. · 2015 · Clinical Epigenetics
  28. Genome-Wide DNA Methylation Patterns in Wild Samples of Two Morphotypes of Threespine Stickleback (Gasterosteus aculeatus)
    Gilbert Smith, Carl Smith, John G. Kenny, Roy R. Chaudhuri, Michael Gordon Ritchie · 2014 · Molecular Biology and Evolution
  29. Combinatorial DNA methylation codes at repetitive elements
    Christophe Papin, Abdulkhaleg Ibrahim, Stéphanie Le Gras, Amandine Velt, Isabelle Stoll, Bernard Jost, Hervé Menoni, Christian Bronner, Stefan I. Dimitrov, Ali Hamiche · 2017 · Genome Research
  30. Integrative genomic analyses in adipocytes implicate DNA methylation in human obesity and diabetes
    Liam McAllan, Damir Baranas̆ić, Sergio Villicaña, Scarlett Brown, Weihua Zhang, Benjamin C. Lehne, Marco Adamo, Andrew D. Jenkinson, Mohamed Elkalaawy, Borzoueh Mohammadi et al. · 2023 · Nature Communications
  31. Integrating DNA methylation dynamics into a framework for understanding epigenetic codes
    Keith E. Szulwach, Peng Jin · 2013 · BioEssays
  32. Enhancers reside in a unique epigenetic environment during early zebrafish development
    Lucas J. T. Kaaij, Michal Mokrý, Meng Zhou, Michael U. Musheev, Geert Geeven, Adrien S. J. Melquiond, António Miguel de Jesus Domingues, Wouter L. de Laat, Christof Niehrs, Andrew D. Smith et al. · 2016 · Genome biology
  33. Integrative modelling of tumour DNA methylation quantifies the contribution of metabolism
    Mahya Mehrmohamadi, Lucas Mentch, Andrew G. Clark, Jason W. Locasale · 2016 · Nature Communications
  34. Enrichment methods provide a feasible approach to comprehensive and adequately powered investigations of the brain methylome
    Robin F. Chan, Andrey A. Shabalin, Lin Ying Xie, Daniel E. Adkins, Min Zhao, Gustavo Turecki, Shaunna L. Clark, Karolina A. Åberg, Edwin J. C. G. van den Oord · 2017 · Nucleic Acids Research
  35. Epigenetic Mechanisms of Gene Regulation in Amyotrophic Lateral Sclerosis
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  36. DNA Methylation Associated with Mitochondrial Dysfunction in a South African Autism Spectrum Disorder Cohort
    Sofia Stathopoulos, Renaud Gaujoux, Jeremie Zander Lindeque, Caitlyn Mahony, Rachelle Van Der Colff, Francois Hendrikus van der Westhuizen, Colleen O’Ryan · 2020 · Autism Research
  37. Robust Detection of DNA Hypermethylation of ZNF154 as a Pan-Cancer Locus with in Silico Modeling for Blood-Based Diagnostic Development
    Gennady Margolin, Hanna M. Petrykowska, Nader Jameel, Daphne W. Bell, Alice Young, Laura L. Elnitski · 2016 · Journal of Molecular Diagnostics
  38. Placental Hypomethylation Is More Pronounced in Genomic Loci Devoid of Retroelements
    Aniruddha Chatterjee, Erin C. Macaulay, Euan James Rodger, Peter A. Stockwell, Matthew F. Parry, Hester E. Roberts, Tania L. Slatter, Noelyn Anne Hung, Celia J. Devenish, Ian M. Morison · 2016 · G3 Genes Genomes Genetics
  39. Low salinity affects cellularity, DNA methylation, and mRNA expression of igf1 in the liver of half smooth tongue sole (Cynoglossus semilaevis)
    Siping Li, Feng He, Haishen Wen, Jifang Li, Yufeng Si, Mingyuan Liu, Yajuan Huang, Lingcai Meng · 2017 · Fish Physiology and Biochemistry
  40. Melatonin impedes Tet1‐dependent mGluR5 promoter demethylation to relieve pain
    Ming‐Chun Hsieh, Yu‐Cheng Ho, Cheng‐Yuan Lai, Dylan Chou, Hsueh‐Hsiao Wang, Gin‐Den Chen, Tzer‐Bin Lin, Hsien‐Yu Peng · 2017 · Journal of Pineal Research
  41. Direct Observation of Activated Kinetics and Downhill Dynamics in DNA Dehybridization
    Paul J. Sanstead, Andrei Tokmakoff · 2018 · The Journal of Physical Chemistry B
  42. Preliminary indications that the Attachment and Biobehavioral Catch-up Intervention alters DNA methylation in maltreated children
    Julie R. Hoye, David Cheishvili, Heather A. Yarger, Tania L. Roth, Moshe Szyf, Mary Dozier · 2019 · Development and Psychopathology
  43. New answers to old questions from genome-wide maps of DNA methylation in hematopoietic cells
    Mira Jeong, Margaret A. Goodell · 2014 · Experimental Hematology
  44. Nasal Epithelial Cells: A Tool to Study Dna Methylation in Airway Diseases
    Anne Bergougnoux, Mireille Claustres, Albertina De Sario · 2015 · Epigenomics
  45. An evaluation of methods to test predefined genomic regions for differential methylation in bisulfite sequencing data
    Hans‐Ulrich Klein, Katja Hebestreit · 2015 · Briefings in Bioinformatics
  46. Differentially Methylated DNA Regions in Monozygotic Twin Pairs Discordant for Rheumatoid Arthritis: An Epigenome-Wide Study
    Anders Jørgen Svendsen, Kristina Gervin, Robert Lyle, Lene Christiansen, Kirsten Ohm Kyvik, Peter Junker, Christian Nielsen, Gunnar Houen, Qihua Tan · 2016 · Frontiers in Immunology
  47. Functional impacts of 5-hydroxymethylcytosine, 5-formylcytosine, and 5-carboxycytosine at a single hemi-modified CpG dinucleotide in a gene promoter
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  48. Epigenetic Regulation of Adult Myogenesis
    Daniel C.L. Robinson, Francis Jeffrey Dilworth · 2017 · Current topics in developmental biology/Current Topics in Developmental Biology
  49. Investigating the genetic and epigenetic basis of big biological questions with the parthenogenetic marbled crayfish: A review and perspectives
    Günter Vogt · 2018 · Journal of Biosciences
  50. Points-to-consider on the return of results in epigenetic research
    Stephanie O. M. Dyke, Katie M. Saulnier, Charles Dupras, Amy P. Webster, Karen J. Maschke, Mark A. Rothstein, Reiner Siebert, Jörn Walter, Stephan Beck, Tomi Pastinen et al. · 2019 · Genome Medicine
  51. Distal CpG islands can serve as alternative promoters to transcribe genes with silenced proximal promoters
    Sarda, Shrutii, Das, Avinash, Vinson, Charles, Hannenhalli, Sridhar · 2017 · Genome Research
  52. Epigenetics of traumatic stress: The association of NR3C1 methylation and posttraumatic stress disorder symptom changes in response to narrative exposure therapy
    Wilker, Sarah, Vukojevic, Vanja, Schneider, Anna, Pfeiffer, Anett, Inerle, Stefan, Pauly, Markus, Elbert, Thomas, Papassotiropoulos, Andreas, de Quervain, Dominique, Kolassa, Iris-Tatjana · 2023 · Translational Psychiatry
  53. The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells
    Anna Wippermann, Oliver Rupp, Karina Brinkrolf, Raimund Hoffrogge, Thomas Noll · 2015 · Journal of Biotechnology
  54. DNA methylation variation of human-specific Alu repeats
    Arundhati Bakshi, Scott W. Herke, Mark A. Batzer, Joomyeong Kim · 2016 · Epigenetics
  55. Galactic Cosmic Radiation Induces Persistent Epigenome Alterations Relevant to Human Lung Cancer
    Elizabeth M. Kennedy, D. R. Powell, Z. Li, Joshua S. K. Bell, Benjamin G. Barwick, Hao Feng, Myles Randolph McCrary, Bhakti Dwivedi, Jeanne Kowalski, William S. Dynan et al. · 2018 · Scientific Reports
  56. Tracing Early Neurodevelopment in Schizophrenia with Induced Pluripotent Stem Cells
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  57. Hypoxia Alters the Response to Anti-EGFR Therapy by Regulating EGFR Expression and Downstream Signaling in a DNA Methylation–Specific and HIF-Dependent Manner
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  58. MethylScore, a pipeline for accurate and context-aware identification of differentially methylated regions from population-scale plant whole-genome bisulfite sequencing data
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  59. Impaired DNA demethylation of C/EBP sites causes premature aging
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  60. Goldmine integrates information placing genomic ranges into meaningful biological contexts
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  61. Customized MethylC-Capture Sequencing to Evaluate Variation in the Human Sperm DNA Methylome Representative of Altered Folate Metabolism
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  62. Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex
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  63. A methylome-wide mQTL analysis reveals associations of methylation sites with GAD1 and HDAC3 SNPs and a general psychiatric risk score
    Ciuculete, D M, Boström, A E, Voisin, S, Philipps, H, Titova, O E, Bandstein, M, Nikontovic, L, Williams, M J, Mwinyi, J, Schiöth, H B · 2017 · Translational Psychiatry
  64. Global DNA methylation patterns in Barrett’s esophagus, dysplastic Barrett’s, and esophageal adenocarcinoma are associated with BMI, gender, and tobacco use
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  65. Body-hypomethylated human genes harbor extensive intragenic transcriptional activity and are prone to cancer-associated dysregulation
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  66. Comprehensive Whole DNA Methylome Analysis by Integrating MeDIP-seq and MRE-seq
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  67. Systems-epigenomics inference of transcription factor activity implicates aryl-hydrocarbon-receptor inactivation as a key event in lung cancer development
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  68. Unusual sequence characteristics of human chromosome 19 are conserved across 11 nonhuman primates
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  69. DNA methylation age as a biomarker for cancer
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  70. Enhancer RNAs step forward: new insights into enhancer function
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  71. Epigenetics in cardiac development, function, and disease
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  73. Novel regional age-associated DNA methylation changes within human common disease-associated loci
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  74. DNA methylation alters transcriptional rates of differentially expressed genes and contributes to pathophysiology in mice fed a high fat diet
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  75. Perinatal DNA Methylation at CDKN2A Is Associated With Offspring Bone Mass: Findings From the Southampton Women's Survey
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  76. Gestational Alcohol Exposure Altered DNA Methylation Status in the Developing Fetus
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  77. Impact of DNA source on genetic variant detection from human whole-genome sequencing data
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  78. DNA Methylation of PGC-1α Is Associated With Elevated mtDNA Copy Number and Altered Urinary Metabolites in Autism Spectrum Disorder
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  87. Discovering DNA methylation patterns for long non-coding RNAs associated with cancer subtypes
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  91. Regulatory Variants and Disease: The E-Cadherin −160C/A SNP as an Example
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  92. Association of DNA methylation in the brain with age in older persons is confounded by common neuropathologies
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  93. Who's your daddy?: paternal inheritance of metabolic disease risk
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  94. An Integrative Framework for Protein Interaction Network and Methylation Data to Discover Epigenetic Modules
    Xiaoke Ma, Penggang Sun, Zhongyuan Zhang · 2018 · IEEE Transactions on Computational Biology and Bioinformatics
  95. TET2 facilitates PPARγ agonist–mediated gene regulation and insulin sensitization in adipocytes
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  96. Information recovery from low coverage whole-genome bisulfite sequencing
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  97. Modulating Epigenetic Memory through Vitamins and TET: Implications for Regenerative Medicine and Cancer Treatment
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  98. Prenatal Alcohol Exposure: Profiling Developmental DNA Methylation Patterns in Central and Peripheral Tissues
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  99. Exposome and Immunity Training: How Pathogen Exposure Order Influences Innate Immune Cell Lineage Commitment and Function
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  100. GADD45 promotes locus-specific DNA demethylation and 2C cycling in embryonic stem cells
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