The DOI matches its Crossref record; 59 of the 59 references it cites were found in a registry or an index.
Zika virus evolution and spread in the Americas
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The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Katoh, K., & Standley, D. M. (2013) · Molecular Biology and Evolution · doi:10.1093/molbev/mst010 · Cited by 46,209
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Grabherr, M. G., Haas, B. J., Yassour, M., Levin, J. Z., Thompson, D. A., Amit, I., Adiconis, X., Fan, L., Raychowdhury, R., Zeng, Q., et al. (2011) · Nature Biotechnology · doi:10.1038/nbt.1883 · Cited by 21,039
Self-citationKearse, M., Moir, R., Wilson, A., Stones-Havas, S., Cheung, M., Sturrock, S., Buxton, S., Cooper, A., Markowitz, S., Duran, C., et al. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts199 · Cited by 20,027
Guindon, S., Dufayard, J.-F., Lefort, V., Anisimova, M., Hordijk, W., & Gascuel, O. (2010) · Systematic Biology · doi:10.1093/sysbio/syq010 · Cited by 18,376
FactoMineR : An R Package for Multivariate Analysis
Lê, S., Josse, J., & Husson, F. (2008) · Journal of Statistical Software · doi:10.18637/jss.v025.i01 · Cited by 11,603
Cd-hit: Accelerated for clustering the next-generation sequencing data
Fu, L., Niu, B., Zhu, Z., Wu, S., & Li, W. (2012) · Bioinformatics · doi:10.1093/bioinformatics/bts565 · Cited by 11,175
Database resources of the National Center for Biotechnology Information: update
Wheeler, D. L. (2004) · Nucleic Acids Research · doi:10.1093/nar/gkh073 · Cited by 10,641
Bayesian Phylogenetics with BEAUti and the BEAST 1.7
Drummond, A. J., Suchard, M. A., Xie, D., & Rambaut, A. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss075 · Cited by 10,063
Self-citationRelaxed Phylogenetics and Dating with Confidence
Drummond, A. J., Ho, S. Y. W., Phillips, M. J., & Rambaut, A. (2006) · PLoS Biology · doi:10.1371/journal.pbio.0040088 · Cited by 6,463
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Field-deployable viral diagnostics using CRISPR-Cas13
Myhrvold, C., Freije, C. A., Gootenberg, J. S., Abudayyeh, O. O., Metsky, H. C., Durbin, A. F., Kellner, M. J., Tan, A. L., Paul, L. M., Parham, L. A., et al. (2018) · Science · doi:10.1126/science.aas8836 · Cited by 1,444
Self-citationQuick, J., Grubaugh, N. D., Pullan, S. T., Claro, I. M., Smith, A. D., Gangavarapu, K., Oliveira, G., Robles-Sikisaka, R., Rogers, T. F., Beutler, N. A., et al. (2017) · Nature Protocols · doi:10.1038/nprot.2017.066 · Cited by 1,190
Self-citationGrubaugh, N. D., Gangavarapu, K., Quick, J., Matteson, N. L., De Jesus, J. G., Main, B. J., Tan, A. L., Paul, L. M., Brackney, D. E., Grewal, S., et al. (2019) · Genome Biology · doi:10.1186/s13059-018-1618-7 · Cited by 1,014
Self-citationEstablishment and cryptic transmission of Zika virus in Brazil and the Americas
Faria, N. R., Quick, J., Claro, I. M., Thézé, J., de Jesus, J. G., Giovanetti, M., Kraemer, M. U. G., Hill, S. C., Black, A., da Costa, A. C., et al. (2017) · Nature · doi:10.1038/nature22401 · Cited by 616
Self-citationTracking virus outbreaks in the twenty-first century
Grubaugh, N. D., Ladner, J. T., Lemey, P., Pybus, O. G., Rambaut, A., Holmes, E. C., & Andersen, K. G. (2018) · Nature Microbiology · doi:10.1038/s41564-018-0296-2 · Cited by 485
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Metadata
- Authors
- Metsky, H. C., Matranga, C. B., Wohl, S., Schaffner, S. F., Freije, C. A., Winnicki, S. M., West, K., Qu, J., Baniecki, M. L., Gladden-Young, A., Lin, A. E., Tomkins-Tinch, C. H., Ye, S. H., Park, D. J., Luo, C. Y., Barnes, K. G., Shah, R. R., Chak, B., Barbosa-Lima, G., Delatorre, E., Vieira, Y. R., Paul, L. M., Tan, A. L., Barcellona, C. M., Porcelli, M. C., Vasquez, C., Cannons, A. C., Cone, M. R., Hogan, K. N., Kopp, E. W., Anzinger, J. J., Garcia, K. F., Parham, L. A., Ramírez, R. M. G., Montoya, M. C. M., Rojas, D. P., Brown, C. M., Hennigan, S., Sabina, B., Scotland, S., Gangavarapu, K., Grubaugh, N. D., Oliveira, G., Robles-Sikisaka, R., Rambaut, A., Gehrke, L., Smole, S., Halloran, M. E., Villar, L., Mattar, S., Lorenzana, I., Cerbino-Neto, J., Valim, C., Degrave, W., Bozza, P. T., Gnirke, A., Andersen, K. G., Isern, S., Michael, S. F., Bozza, F. A., Souza, T. M. L., Bosch, I., Yozwiak, N. L., MacInnis, B. L., & Sabeti, P. C.
- Venue
- Nature
- Published
- 2017-05-24
- Volume
- 546
- Issue
- 7658
- Pages
- 411-415
- ISSN
- 0028-0836 (ISSN-L)
- 1476-4687
- OpenAlex
- W2620298867
- Cited by
- 403
- References
- 59
- FWCI
- 51.37
- Type
- journal article
- Language
- en
- Open access
- bronze
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- CoChat. (2026). Citation check: Zika virus evolution and spread in the Americas. https://app.cochat.ai/papers/10.1038/nature22402
- The paper
- Metsky, H. C., Matranga, C. B., Wohl, S., Schaffner, S. F., Freije, C. A., Winnicki, S. M., West, K., Qu, J., Baniecki, M. L., Gladden-Young, A., Lin, A. E., Tomkins-Tinch, C. H., Ye, S. H., Park, D. J., Luo, C. Y., Barnes, K. G., Shah, R. R., Chak, B., Barbosa-Lima, G., . . . Sabeti, P. C. (2017). Zika virus evolution and spread in the Americas. Nature. https://doi.org/10.1038/nature22402
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.