The binary protein-protein interaction landscape of Escherichia coli

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Items 101–200 of 232

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4. Proteomes of pathogenicEscherichia coli/Shigellagroup surveyed in their host environments
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6. Identification of protein complexes and functional modules in E. coli PPI networks
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7. ZapG (YhcB/DUF1043), a novel cell division protein in gamma-proteobacteria linking the Z-ring to septal peptidoglycan synthesis
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8. Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions
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    Haiqing Zhao, Donald S. Petrey, Diana Murray, Barry H. Honig · 2024 · Proceedings of the National Academy of Sciences
15. Tetrameric UvrD Helicase Is Located at the E. Coli Replisome due to Frequent Replication Blocks
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16. Comparative analysis of differential proteome-wide protein-protein interaction network of Methanobrevibacter ruminantium M1
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17. Defining hierarchical protein interaction networks from spectral analysis of bacterial proteomes
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18. The interactome of Streptococcus pneumoniae and its bacteriophages show highly specific patterns of interactions among bacteria and their phages
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19. Discovering large conserved functional components in global network alignment by graph matching
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20. Using yeast two-hybrid system and molecular dynamics simulation to detect venom protein-protein interactions
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21. Protein complex detection based on partially shared multi-view clustering
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22. The Quantitative Biotinylproteomics Studies Reveal a WInd-Related Kinase 1 (Raf-Like Kinase 36) Functioning as an Early Signaling Component in Wind-Induced Thigmomorphogenesis and Gravitropism
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23. How different viruses perturb host cellular machinery via short linear motifs
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24. Proteome Data Improves Protein Function Prediction in the Interactome of Helicobacter pylori
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25. Proteins with Highly Evolvable Domain Architectures Are Nonessential but Highly Retained
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26. Misconnecting the dots: altered mitochondrial protein-protein interactions and their role in neurodegenerative disorders
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27. The protein interactome of the citrus Huanglongbing pathogen Candidatus Liberibacter asiaticus
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28. Co-regulation of translation in protein complexes
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29. Statistical physics of interacting proteins: Impact of dataset size and quality assessed in synthetic sequences
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31. Assessment of model fit via network comparison methods based on subgraph counts
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32. Co‐evolution at protein–protein interfaces guides inference of stoichiometry of oligomeric protein complexes by de novo structure prediction
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33. Antihistamine drug loratadine at environmentally relevant concentrations promotes conjugative transfer of antibiotic resistance genes: Coeffect of oxidative stress and ion transport
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36. Experimental Characterization of Protein Complex Structure, Dynamics, and Assembly
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37. Protein-protein complexes as targets for drug discovery against infectious diseases
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38. Barcode fusion genetics-protein-fragment complementation assay (BFG-PCA): tools and resources that expand the potential for binary protein interaction discovery
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39. E. coli network upgrade
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40. Local Action with Global Impact: Highly Similar Infection Patterns of Human Viruses and Bacteriophages
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45. Experimental characterization and prediction of Escherichia coli host cell proteome retention during preparative chromatography
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46. Mango: combining and analyzing heterogeneous biological networks
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47. Protein Structures, Interactions and Function from Evolutionary Couplings
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48. The novel E. coli cell division protein, YtfB, plays a role in eukaryotic cell adhesion
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49. BindML/BindML+: Detecting Protein-Protein Interaction Interface Propensity from Amino Acid Substitution Patterns
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50. The rsmS (ybaM) mutation causes bypass suppression of the RsmAB post-transcriptional virulence regulation system in enterobacterial phytopathogens
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51. Prediction of Intra-Species Protein-Protein Interactions in Enteropathogens Facilitating Systems Biology Study
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52. Proteome-scale discovery of protein interactions with residue-level resolution using sequence coevolution
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53. MESM: integrating multi-source data for high-accuracy protein-protein interactions prediction through multimodal language models
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54. Uncovering domain motif interactions using high‐throughput protein–protein interaction detection methods
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55. Direct Quantification of Protein–Protein Interactions in Living Bacterial Cells
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58. The role of proteomics in studies of protein moonlighting
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60. Testing the Domino Theory of Gene Loss in Buchnera aphidicola: The Relevance of Epistatic Interactions
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61. Bacterial Protein Interaction Networks: Connectivity is Ruled by Gene Conservation, Essentiality and Function
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62. iBRET Screen of the ABCD1 Peroxisomal Network and Mutation-Induced Network Perturbations
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64. Enhancing coevolutionary signals in protein–protein interaction prediction through clade-wise alignment integration
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65. A Fast Exact Algorithm to Enumerate Maximal Pseudo-cliques in Large Sparse Graphs
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66. Fine Epitope Mapping of Monoclonal Antibodies to the DNA Repair Protein, RadA
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69. Analysis of the RNA and Protein Complexome by Grad-seq
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70. Interactomes – Scaffolds of Cellular Systems
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73. Combining structural modeling and deep learning to calculate the E. coli protein interactome and functional networks
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75. On the Origin of Compositional Features of Ribosomes
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