The DOI matches its Crossref record; 56 of the 56 references it cites were found in a registry or an index.
Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine
Open accessAbstract
We present a sequence-tag-based search engine, Open-pFind, to identify peptides in an ultra-large search space that includes coeluting peptides, unexpected modifications and digestions. Our method detects peptides with higher precision and speed than seven other search engines. Open-pFind identified 70–85% of the tandem mass spectra in four large-scale datasets and 14,064 proteins, each supported by at least two protein-unique peptides, in a human proteome dataset.
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MSFragger: ultrafast and comprehensive peptide identification in mass spectrometry–based proteomics
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Self-citationFast and comprehensive N- and O-glycoproteomics analysis with MSFragger-Glyco
Polasky, D. A., Yu, F., Teo, G. C., & Nesvizhskii, A. I. (2020) · Nature Methods · doi:10.1038/s41592-020-0967-9 · Cited by 293
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Metadata
- Authors
- Chi, H., Liu, C., Yang, H., Zeng, W.-F., Wu, L., Zhou, W.-J., Wang, R.-M., Niu, X.-N., Ding, Y.-H., Zhang, Y., Wang, Z.-W., Chen, Z.-L., Sun, R.-X., Liu, T., Tan, G.-M., Dong, M.-Q., Xu, P., Zhang, P.-H., & He, S.-M.
- Venue
- Nature Biotechnology
- Published
- 2018-10-08
- Volume
- 36
- Issue
- 11
- Pages
- 1059-1061
- ISSN
- 0733-222X (ISSN-L)
- 1087-0156
- 1546-1696
- OpenAlex
- W2894727674
- Cited by
- 434
- References
- 56
- FWCI
- 14.49
- Type
- journal article
- Language
- en
- Open access
- green
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- Chi, H., Liu, C., Yang, H., Zeng, W.-F., Wu, L., Zhou, W.-J., Wang, R.-M., Niu, X.-N., Ding, Y.-H., Zhang, Y., Wang, Z.-W., Chen, Z.-L., Sun, R.-X., Liu, T., Tan, G.-M., Dong, M.-Q., Xu, P., Zhang, P.-H., & He, S.-M. (2018). Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine. Nature Biotechnology. https://doi.org/10.1038/nbt.4236
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