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Haem-dependent dimerization of PGRMC1/Sigma-2 receptor facilitates cancer proliferation and chemoresistance

Kabe, Yasuaki, Nakane, Takanori, Koike, Ikko, Yamamoto, Tatsuya, Sugiura, Yuki, Harada, Erisa, Sugase, Kenji, Shimamura, Tatsuro, Ohmura, Mitsuyo, Muraoka, Kazumi, Yamamoto, Ayumi, Uchida, Takeshi, Iwata, So, Yamaguchi, Yuki, Krayukhina, Elena, Noda, Masanori, Handa, Hiroshi, Ishimori, Koichiro, Uchiyama, Susumu, Kobayashi, Takuya, Suematsu, Makoto·2016·Nature Communications

Abstract

Progesterone-receptor membrane component 1 (PGRMC1/Sigma-2 receptor) is a haem-containing protein that interacts with epidermal growth factor receptor (EGFR) and cytochromes P450 to regulate cancer proliferation and chemoresistance; its structural basis remains unknown. Here crystallographic analyses of the PGRMC1 cytosolic domain at 1.95 Å resolution reveal that it forms a stable dimer through stacking interactions of two protruding haem molecules. The haem iron is five-coordinated by Tyr113, and the open surface of the haem mediates dimerization. Carbon monoxide (CO) interferes with PGRMC1 dimerization by binding to the sixth coordination site of the haem. Haem-mediated PGRMC1 dimerization is required for interactions with EGFR and cytochromes P450, cancer proliferation and chemoresistance against anti-cancer drugs; these events are attenuated by either CO or haem deprivation in cancer cells. This study demonstrates protein dimerization via haem–haem stacking, which has not been seen in eukaryotes, and provides insights into its functional significance in cancer.

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Research works printed but not linked: 62

  1. Jakszyn, P. et al. Meat and heme iron intake and esophageal adenocarcinoma in the European prospective investigation into cancer and nutrition study. Int. J. Cancer. 133, 2744–2750 (2013).
  2. Shen, J. et al. Iron metabolism regulates p53 signaling through direct heme-p53 interaction and modulation of p53 localization, stability and function. Cell Rep. 7, 180–193 (2014). · DOI
  3. Hooda, J. et al. Enhanced heme function and mitochondrial respiration promote the progression of lung cancer cells. PLoS ONE 8, e63402 (2013). · DOI
  4. Wegiel, B. et al. Carbon monoxide expedites metabolic exhaustion to inhibit tumor growth. Cancer Res. 73, 7009–7021 (2013). · DOI
  5. Yamamoto, T. et al. Reduced methylation of PFKFB3 in cancer cells shunts glucose towards the pentose phosphate pathway. Nat. Commun. 5, 3480 (2014). · DOI
  6. Sakamoto, S., Kabe, Y., Hatakeyama, M., Yamaguchi, Y. & Handa, H. Development and application of high-performance affinity beads: toward chemical biology and drug discovery. Chem. Rec. 9, 66–85 (2009). · DOI
  7. Mifsud, W. & Bateman, A. Membrane-bound progesterone receptors contain a cytochrome b5-like ligand-binding domain. Genome. Biol. 3, RESEARCH0068 (2002). · DOI
  8. Neubauer, H. et al. Possible role of PGRMC1 in breast cancer development. Climacteric 16, 509–513 (2013). · DOI
  9. Craven, R. J. PGRMC1: a new biomarker for the estrogen receptor in breast cancer. Breast Cancer Res. 10, 113 (2008). · DOI
  10. Peluso, J. J., Liu, X., Saunders, M. M., Claffey, K. P. & Phoenix, K. Regulation of ovarian cancer cell viability and sensitivity to cisplatin by progesterone receptor membrane component-1. J. Clin. Endocrinol. Metab. 93, 1592–1599 (2008). · DOI
  11. Friel, A. M. et al. Progesterone receptor membrane component 1 deficiency attenuates growth while promoting chemosensitivity of human endometrial xenograft tumors. Cancer Lett. 356, 434–442 (2015). · DOI
  12. Nie, A. Y. et al. Predictive toxicogenomics approaches reveal underlying molecular mechanisms of nongenotoxic carcinogenicity. Mol. Carcinog. 45, 914–933 (2006). · DOI
  13. Mir, S. U., Ahmed, I. S., Arnold, S. & Craven, R. J. Elevated progesterone receptor membrane component 1/sigma-2 receptor levels in lung tumors and plasma from lung cancer patients. Int. J. Cancer 131, E1–E9 (2012). · DOI
  14. Hornick, J. R., Spitzer, D., Goedegebuure, P., Mach, R. H. & Hawkins, W. G. Therapeutic targeting of pancreatic cancer utilizing sigma-2 ligands. Surgery 152, S152–S156 (2012). · DOI
  15. Crudden, G., Loesel, R. & Craven, R. J. Overexpression of the cytochrome p450 activator hpr6 (heme-1 domain protein/human progesterone receptor) in tumors. Tumour Biol. 26, 142–146 (2005). · DOI
  16. Ahmed, I. S., Rohe, H. J., Twist, K. E. & Craven, R. J. Pgrmc1 (progesterone receptor membrane component 1) associates with epidermal growth factor receptor and regulates erlotinib sensitivity. J. Biol. Chem. 285, 24775–24782 (2010). · DOI
  17. Hughes, A. L. et al. Dap1/PGRMC1 binds and regulates cytochrome P450 enzymes. Cell Metab. 5, 143–149 (2007). · DOI · Paper page
  18. Ahmed, I. S., Rohe, H. J., Twist, K. E., Mattingly, M. N. & Craven, R. J. Progesterone receptor membrane component 1 (Pgrmc1): a heme-1 domain protein that promotes tumorigenesis and is inhibited by a small molecule. J. Pharmacol. Exp. Ther. 333, 564–573 (2010). · DOI
  19. Ahmed, I. S., Chamberlain, C. & Craven, R. J. S2R(Pgrmc1): the cytochrome-related sigma-2 receptor that regulates lipid and drug metabolism and hormone signaling. Expert Opin. Drug. Metab. Toxicol. 8, 361–370 (2012). · DOI · Paper page
  20. Kaluka, D., Batabyal, D., Chiang, B. Y., Poulos, T. L. & Yeh, S. R. Spectroscopic and mutagenesis studies of human PGRMC1. Biochemistry 54, 1638–1647 (2015). · DOI
  21. Min, L. et al. Molecular identification of adrenal inner zone antigen as a heme-binding protein. FEBS J. 272, 5832–5843 (2005). · DOI
  22. Krissinel, E. & Henrick, K. Inference of macromolecular assemblies from crystalline state. J. Mol. Biol. 372, 774–797 (2007). · DOI
  23. Shen, Y., Delaglio, F., Cornilescu, G. & Bax, A. TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts. J. Biomol. NMR. 44, 213–223 (2009). · DOI
  24. Nogi, T. et al. Structural basis for semaphorin signalling through the plexin receptor. Nature 467, 1123–1127 (2010). · DOI
  25. Ishikawa, H. et al. Involvement of heme regulatory motif in heme-mediated ubiquitination and degradation of IRP2. Mol. Cell. 19, 171–181 (2005). · DOI
  26. Liu, Y. et al. Replacement of the proximal histidine iron ligand by a cysteine or tyrosine converts heme oxygenase to an oxidase. Biochemistry 38, 3733–3743 (1999). · DOI
  27. Kubo, A. et al. Semi-quantitative analyses of metabolic systems of human colon cancer metastatic xenografts in livers of superimmunodeficient NOG mice. Anal. Bioanal. Chem. 400, 1895–1904 (2011). · DOI
  28. Bao, Y. et al. Energy management by enhanced glycolysis in G1-phase in human colon cancer cells in vitro and in vivo. Mol. Cancer Res. 11, 973–985 (2013). · DOI
  29. Quintieri, L. et al. In vivo antitumor activity and host toxicity of methoxymorpholinyl doxorubicin: role of cytochrome P450 3A. Cancer Res. 60, 3232–3238 (2000).
  30. McFadyen, M. C. et al. Cytochrome P450 CYP1B1 protein expression: a novel mechanism of anticancer drug resistance. Biochem. Pharmacol. 62, 207–212 (2001). · DOI
  31. Szczesna-Skorupa, E. & Kemper, B. Progesterone receptor membrane component 1 inhibits the activity of drug-metabolizing cytochromes P450 and binds to cytochrome P450 reductase. Mol. Pharmacol. 79, 340–350 (2011). · DOI
  32. Higashimoto, Y. et al. Involvement of NADPH in the interaction between heme oxygenase-1 and cytochrome P450 reductase. J. Biol. Chem. 280, 729–737 (2005). · DOI
  33. Wakasugi, K., Nakano, T. & Morishima, I. Oxidized human neuroglobin acts as a heterotrimeric Galpha protein guanine nucleotide dissociation inhibitor. J. Biol. Chem. 278, 36505–36512 (2003). · DOI
  34. Lucas, A. T. et al. Ligand binding reveals a role for heme in translationally-controlled tumor protein dimerization. PLoS ONE 9, e112823 (2014). · DOI
  35. Watanabe, M. et al. Structural basis for multimeric heme complexation through a specific protein-heme interaction: the case of the third neat domain of IsdH from Staphylococcus aureus. J. Biol. Chem. 283, 28649–28659 (2008). · DOI
  36. Cahill, M. A. Progesterone receptor membrane component 1: an integrative review. J. Steroid Biochem. Mol. Biol. 105, 16–36 (2007). · DOI
  37. Peluso, J. J., Griffin, D., Liu, X. & Horne, M. Progesterone receptor membrane component-1 (PGRMC1) and PGRMC-2 interact to suppress entry into the cell cycle in spontaneously immortalized rat granulosa cells. Biol. Reprod. 91, 104 (2014). · DOI
  38. Craven, R. J., Mallory, J. C. & Hand, R. A. Regulation of iron homeostasis mediated by the heme-binding protein Dap1 (damage resistance protein 1) via the P450 protein Erg11/Cyp51. J. Biol. Chem. 282, 36543–36551 (2007). · DOI
  39. Oda, S., Nakajima, M., Toyoda, Y., Fukami, T. & Yokoi, T. Progesterone receptor membrane component 1 modulates human cytochrome P450 activities in an isoform-dependent manner. Drug Metab. Dispos. 39, 2057–2065 (2011). · DOI
  40. Lin, S. T. et al. PGRMC1 contributes to doxorubicin-induced chemoresistance in MES-SA uterine sarcoma. Cell. Mol. Life Sci. 72, 2395–2409 (2015). · DOI
  41. Wendler, A., Keller, D., Albrecht, C., Peluso, J. J. & Wehling, M. Involvement of let-7/miR-98 microRNAs in the regulation of progesterone receptor membrane component 1 expression in ovarian cancer cells. Oncol. Rep. 25, 273–279 (2011).
  42. Liu, N., Zhou, C., Zhao, J. & Chen, Y. Reversal of paclitaxel resistance in epithelial ovarian carcinoma cells by a MUC1 aptamer-let-7i chimera. Cancer Invest. 30, 577–582 (2012). · DOI
  43. Kajimura, M., Fukuda, R., Bateman, R. M., Yamamoto, T. & Suematsu, M. Interactions of multiple gas-transducing systems: hallmarks and uncertainties of CO, NO, and H2S gas biology. Antioxid. Redox. Signal. 13, 157–192 (2010). · DOI
  44. Kyokane, T. et al. Carbon monoxide from heme catabolism protects against hepatobiliary dysfunction in endotoxin-treated rat liver. Gastroenterology 120, 1227–1240 (2001). · DOI
  45. Suematsu, M. & Ishimura, Y. The heme oxygenase-carbon monoxide system: a regulator of hepatobiliary function. Hepatology 31, 3–6 (2000). · DOI
  46. Chen, C. & Paw, B. H. Cellular and mitochondrial iron homeostasis in vertebrates. Biochim. Biophys. Acta. 1823, 1459–1467 (2012). · DOI
  47. Lee, W. Y. et al. The induction of heme oxygenase-1 suppresses heat shock protein 90 and the proliferation of human breast cancer cells through its byproduct carbon monoxide. Toxicol. Appl. Pharmacol. 274, 55–62 (2014). · DOI
  48. Xu, J. et al. Identification of the PGRMC1 protein complex as the putative sigma-2 receptor binding site. Nat. Commun. 2, 380 (2011). · DOI · Paper page
  49. Izzo, N. J. et al. Alzheimer's therapeutics targeting amyloid beta 1-42 oligomers II: Sigma-2/PGRMC1 receptors mediate Abeta 42 oligomer binding and synaptotoxicity. PLoS ONE 9, e111899 (2014). · DOI · Paper page
  50. Qin, Y. et al. Progesterone attenuates Abeta25-35-induced neuronal toxicity via JNK inactivation and progesterone receptor membrane component 1-dependent inhibition of mitochondrial apoptotic pathway. J. Steroid Biochem. Mol. Biol. 154, 302–311 (2015). · DOI
  51. Sahlholm, K., Liao, F., Holtzman, D. M., Xu, J. & Mach, R. H. Sigma-2 receptor binding is decreased in female, but not male, APP/PS1 mice. Biochem. Biophys. Res. Commun. 460, 439–445 (2015). · DOI
  52. Kabsch, W. XDS. Acta. Crystallogr. D Biol. Crystallogr. 66, 125–132 (2010). · DOI · Paper page
  53. Terwilliger, T. C. et al. Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard. Acta. Crystallogr. D Biol. Crystallogr. 65, 582–601 (2009). · DOI
  54. Emsley, P. & Cowtan, K. Coot: model-building tools for molecular graphics. Acta. Crystallogr. D Biol. Crystallogr. 60, 2126–2132 (2004). · DOI · Paper page
  55. Adams, P. D. et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta. Crystallogr. D Biol. Crystallogr. 66, 213–221 (2010). · DOI · Paper page
  56. Schuck, P. Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling. Biophys. J. 78, 1606–1619 (2000). · DOI
  57. Brookes, E., Demeler, B., Rosano, C. & Rocco, M. The implementation of SOMO (SOlution MOdeller) in the UltraScan analytical ultracentrifugation data analysis suite: enhanced capabilities allow the reliable hydrodynamic modeling of virtually any kind of biomacromolecule. Eur. Biophys. J. 39, 423–435 (2010). · DOI
  58. Wu, D. H., Chen, A. D. & Johnson, C. S. An improved diffusion-ordered spectroscopy experiment incorporating bipolar-gradient pulses. J. Magn. Reson. A. 115, 260–264 (1995). · DOI
  59. Esturau, N. et al. The use of sample rotation for minimizing convection effects in self-diffusion NMR measurements. J. Magn. Reson. 153, 48–55 (2001). · DOI
  60. Suematsu, M. et al. Carbon monoxide: an endogenous modulator of sinusoidal tone in the perfused rat liver. J. Clin. Invest. 96, 2431–2437 (1995). · DOI
  61. Goda, N. et al. Distribution of heme oxygenase isoforms in rat liver. Topographic basis for carbon monoxide-mediated microvascular relaxation. J. Clin. Invest. 101, 604–612 (1998). · DOI
  62. Nagai, T. et al. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nat. Biotechnol. 20, 87–90 (2002). · DOI

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Metadata

Authors
Kabe, Y., Nakane, T., Koike, I., Yamamoto, T., Sugiura, Y., Harada, E., Sugase, K., Shimamura, T., Ohmura, M., Muraoka, K., Yamamoto, A., Uchida, T., Iwata, S., Yamaguchi, Y., Krayukhina, E., Noda, M., Handa, H., Ishimori, K., Uchiyama, S., Kobayashi, T., & Suematsu, M.
Venue
Nature Communications
Published
2016-03-18
Volume
7
Issue
1
ISSN
2041-1723
Cited by
171
References
4
Language
en

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