The DOI matches its Crossref record; 5 of the 5 references it cites were found in a registry or an index.
Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis
Open accessAbstract
Functional genomics of the Gram-positive model organism Bacillus subtilis reveals valuable insights into basic concepts of cell physiology. In this study, we monitor temporal changes in the proteome, transcriptome and extracellular metabolome of B. subtilis caused by glucose starvation. For proteomic profiling, a combination of in vivo metabolic labelling and shotgun mass spectrometric analysis was carried out for five different proteomic subfractions (cytosolic, integral membrane, membrane, surface and extracellular proteome fraction), leading to the identification of ∼52% of the predicted proteome of B. subtilis. Quantitative proteomic and corresponding transcriptomic data were analysed with Voronoi treemaps linking functional classification and relative expression changes of gene products according to their fate in the stationary phase. The obtained data comprise the first comprehensive profiling of changes in the membrane subfraction and allow in-depth analysis of major physiological processes, including monitoring of protein degradation. Identifying the transcripts and proteins that fluctuate in response to stimuli provides important information for understanding cell physiology. In this study, 52% of theBacillus subtilispredicted proteome is identified following glucose starvation, revealing further insight into protein dynamics at a global scale.
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Anderson, N. L., & Anderson, N. G. (2002) · Molecular & Cellular Proteomics · doi:10.1074/mcp.r200007-mcp200 · Cited by 4,414
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de Godoy, L. M. F., Olsen, J. V., Cox, J., Nielsen, M. L., Hubner, N. C., Fröhlich, F., Walther, T. C., & Mann, M. (2008) · Nature · doi:10.1038/nature07341 · Cited by 873
Eymann, C., Homuth, G., Scharf, C., & Hecker, M. (2002) · Journal of Bacteriology · doi:10.1128/jb.184.9.2500-2520.2002 · Cited by 306
Self-citationFournier, M. L., Paulson, A., Pavelka, N., Mosley, A. L., Gaudenz, K., Bradford, W. D., Glynn, E., Li, H., Sardiu, M. E., Fleharty, B., et al. (2010) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m900415-mcp200 · Cited by 161
Soufi, B., Kumar, C., Gnad, F., Mann, M., Mijakovic, I., & Macek, B. (2010) · Journal of Proteome Research · doi:10.1021/pr100150w · Cited by 107
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Self-citationVerrucomicrobia use hundreds of enzymes to digest the algal polysaccharide fucoidan
Sichert, A., Corzett, C. H., Schechter, M. S., Unfried, F., Markert, S., Becher, D., Fernandez-Guerra, A., Liebeke, M., Schweder, T., Polz, M. F., et al. (2020) · Nature Microbiology · doi:10.1038/s41564-020-0720-2 · Cited by 325
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Metadata
- Authors
- Otto, A., Bernhardt, J., Meyer, H., Schaffer, M., Herbst, F.-A., Siebourg, J., Mäder, U., Lalk, M., Hecker, M., & Becher, D.
- Venue
- Nature Communications
- Published
- 2010-12-14
- Volume
- 1
- Issue
- 1
- Pages
- 137-137
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W1966566979
- Cited by
- 181
- References
- 5
- FWCI
- 5.80
- Type
- journal article
- Language
- en
- Open access
- hybrid
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