Proteomic screen reveals Fbw7 as a modulator of the NF-κB pathway
Open accessAbstract
Fbw7 is a ubiquitin-ligase that targets several oncoproteins for proteolysis, but the full range of Fbw7 substrates is not known. Here we show that by performing quantitative proteomics combined with degron motif searches, we effectively screened for a more complete set of Fbw7 targets. We identify 89 putative Fbw7 substrates, including several disease-associated proteins. The transcription factor NF-κB2 (p100/p52) is one of the candidate Fbw7 substrates. We show that Fbw7 interacts with p100 via a conserved degron and that it promotes degradation of p100 in a GSK3β phosphorylation-dependent manner. Fbw7 inactivation increases p100 levels, which in the presence of NF-κB pathway stimuli, leads to increased p52 levels and activity. Accordingly, the apoptotic threshold can be increased by loss of Fbw7 in a p100-dependent manner. In conclusion, Fbw7-mediated destruction of p100 is a regulatory component restricting the response to NF-κB2 pathway stimulation. Fbw7 is a ubiquitin-ligase, which targets several oncoproteins for proteolysis, and is therefore important for the control and prevention of tumorigenesis. In this study, Arabi and colleagues carry out a proteomic screen of the targets of Fbw7, and identify Nuclear Factor of κ-B2 as a substrate.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Other tumor suppressors among them Fbw7 and p53 have also been reported to target NF-κB.
“It is noteworthy that other tumor suppressors among them Fbw7 (43) and p53 have also been reported to target NF-κB (44).”
From Tumor suppressor PDCD4 inhibits NF-κB-dependent transcription in human glioblastoma cells by direct interaction with p65 (2014) · cites this paper as [43]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Semi-supervised learning for peptide identification from shotgun proteomics datasets
Käll, L., Canterbury, J. D., Weston, J., Noble, W. S., & MacCoss, M. J. (2007) · Nature Methods · doi:10.1038/nmeth1113 · Cited by 2,424 · see citing works
Welcker, M., & Clurman, B. E. (2008) · Nature Reviews Cancer · doi:10.1038/nrc2290 · Cited by 1,084 · see citing works
Forshed, J., Johansson, H. J., Pernemalm, M., Branca, R. M. M., Sandberg, A., & Lehtiö, J. (2011) · Molecular & Cellular Proteomics · doi:10.1074/mcp.m111.010264 · Cited by 32 · see citing works
Self-citation
Flagged first, then by citations
Research works printed but not linked: 44
- Strohmaier H.. Human F-box protein hCdc4 targets cyclin E for proteolysis and is mutated in a breast cancer cell line. Nature 413, 316– 322 (2001). 11565034
- Welcker M.. The Fbw7 tumor suppressor regulates glycogen synthase kinase 3 phosphorylation-dependent c-Myc protein degradation. Proc. Natl Acad. Sci. USA 101, 9085– 9090 (2004). 15150404 PMC428477
- Oberg C.. The Notch intracellular domain is ubiquitinated and negatively regulated by the mammalian Sel-10 homolog. The Journal of biological chemistry 276, 35847– 35853 (2001). 11461910
- Inuzuka H.. SCF(FBW7) regulates cellular apoptosis by targeting MCL1 for ubiquitylation and destruction. Nature 471, 104– 109 (2011). 21368833 PMC3076007
- Tetzlaff M. T.. Defective cardiovascular development and elevated cyclin E and Notch proteins in mice lacking the Fbw7 F-box protein. Proc. Natl Acad. Sci. USA 101, 3338– 3345 (2004). 14766969 PMC373463
- Rajagopalan H.. Inactivation of hCDC4 can cause chromosomal instability. Nature 428, 77– 81 (2004). 14999283
- Akhoondi S.. FBXW7/hCDC4 is a general tumor suppressor in human cancer. Cancer Res. 67, 9006– 9012 (2007). 17909001
- Tan Y., Sangfelt O. & Spruck C. The Fbxw7/hCdc4 tumor suppressor in human cancer. Cancer Lett. 271, 1– 12 (2008). 18541364
- Hao B., Oehlmann S., Sowa M. E., Harper J. W. & Pavletich N. P. Structure of a Fbw7-Skp1-cyclin E complex: multisite-phosphorylated substrate recognition by SCF ubiquitin ligases. Mol. Cell 26, 131– 143 (2007). 17434132
- Nash P.. Multisite phosphorylation of a CDK inhibitor sets a threshold for the onset of DNA replication. Nature 414, 514– 521 (2001). 11734846
- Welcker M. & Clurman B. E. Fbw7/hCDC4 dimerization regulates its substrate interactions. Cell Div. 2, 7 (2007). 17298674 PMC1802738
- Orlicky S., Tang X., Willems A., Tyers M. & Sicheri F. Structural basis for phosphodependent substrate selection and orientation by the SCFCdc4 ubiquitin ligase. Cell 112, 243– 256 (2003). 12553912
- Baldwin A. S. Jr. The NF-kappaB and I kappaB proteins: new discoveries and insights. Annu. Rev. Immunol. 14, 649– 683 (1996). 8717528
- Barre B. & Perkins N. D. A cell cycle regulatory network controlling NF-kappaB subunit activity and function. EMBO J. 26, 4841– 4855 (2007). 17962807 PMC2099464
- Sun S. C. Non-canonical NF-kappaB signaling pathway. Cell Res. 21, 71– 85 (2011). 21173796 PMC3193406
- Shih V. F., Tsui R., Caldwell A. & Hoffmann A. A single NF-kappaB system for both canonical and non-canonical signaling. Cell Res. 21, 86– 102 (2011). 21102550 PMC3193412
- Thompson A.. Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS. Anal. Chem. 75, 1895– 1904 (2003). 12713048
- Bengoechea-Alonso M. T. & Ericsson J. Tumor suppressor Fbxw7 regulates TGFbeta signaling by targeting TGIF1 for degradation. Oncogene 29, 5322– 5328 (2010). 20622901
- Mao J. H.. FBXW7 targets mTOR for degradation and cooperates with PTEN in tumor suppression. Science 321, 1499– 1502 (2008). 18787170 PMC2849753
- Liu N.. The Fbw7/human CDC4 tumor suppressor targets proproliferative factor KLF5 for ubiquitination and degradation through multiple phosphodegron motifs. J. Biol. Chem. 285, 18858– 18867 (2010). 20388706 PMC2881808
- Blom N., Sicheritz-Ponten T., Gupta R., Gammeltoft S. & Brunak S. Prediction of post-translational glycosylation and phosphorylation of proteins from the amino acid sequence. Proteomics 4, 1633– 1649 (2004). 15174133
- Xiao G., Harhaj E. W. & Sun S. C. NF-kappaB-inducing kinase regulates the processing of NF-kappaB2 p100. Mol. Cell 7, 401– 409 (2001). 11239468
- Derudder E.. RelB/p50 dimers are differentially regulated by tumor necrosis factor-alpha and lymphotoxin-beta receptor activation: critical roles for p100. J. Biol. Chem. 278, 23278– 23284 (2003). 12709443
- Xiao G.. Retroviral oncoprotein Tax induces processing of NF-kappaB2/p100 in T cells: evidence for the involvement of IKKalpha. EMBO J. 20, 6805– 6815 (2001). 11726516 PMC125766
- Basak S.. A fourth IkappaB protein within the NF-kappaB signaling module. Cell 128, 369– 381 (2007). 17254973 PMC1831796
- Bernal-Mizrachi L., Lovly C. M. & Ratner L. The role of NF-{kappa}B-1 and NF-{kappa}B-2-mediated resistance to apoptosis in lymphomas. Proc. Natl Acad. Sci. USA 103, 9220– 9225 (2006). 16751281 PMC1482593
- Busino L.. Fbxw7alpha- and GSK3-mediated degradation of p100 is a pro-survival mechanism in multiple myeloma. Nat. Cell Biol. 14, 375– 385 (2012). 22388891 PMC3339029
- Wang Y.. NF-kappaB2 p100 is a pro-apoptotic protein with anti-oncogenic function. Nat. Cell Biol. 4, 888– 893 (2002). 12389034
- Perkins N. D. The diverse and complex roles of NF-kappaB subunits in cancer. Nat. Rev. Cancer 12, 121– 132 (2012). 22257950
- Nadiminty N.. Stat3 activation of NF-{kappa}B p100 processing involves CBP/p300-mediated acetylation. Proc. Natl Acad. Sci. USA 103, 7264– 7269 (2006). 16651533 PMC1464331
- Liang C., Zhang M. & Sun S. C. beta-TrCP binding and processing of NF-kappaB2/p100 involve its phosphorylation at serines 866 and 870. Cell Signal 18, 1309– 1317 (2006). 16303288
- Keats J. J.. Promiscuous mutations activate the noncanonical NF-kappaB pathway in multiple myeloma. Cancer Cell 12, 131– 144 (2007). 17692805 PMC2083698
- Annunziata C. M.. Frequent engagement of the classical and alternative NF-kappaB pathways by diverse genetic abnormalities in multiple myeloma. Cancer Cell 12, 115– 130 (2007). 17692804 PMC2730509
- Xiao G., Rabson A. B., Young W., Qing G. & Qu Z. Alternative pathways of NF-kappaB activation: a double-edged sword in health and disease. Cytokine Growth Factor Rev. 17, 281– 293 (2006). 16793322
- Xiao G. & Fu J. NF-kappaB and cancer: a paradigm of Yin-Yang. Am. J. Cancer Res. 1, 192– 221 (2011). 21969033 PMC3180046
- Staudt L. M. Oncogenic activation of NF-kappaB. Cold Spring Harb. Perspect. Biol. 2, a000109 (2010). 20516126 PMC2869521
- van Drogen F.. Ubiquitylation of cyclin E requires the sequential function of SCF complexes containing distinct hCdc4 isoforms. Mol. Cell 23, 37– 48 (2006). 16818231
- Rocha S., Martin A. M., Meek D. W. & Perkins N. D. p53 represses cyclin D1 transcription through down regulation of Bcl-3 and inducing increased association of the p52 NF-kappaB subunit with histone deacetylase 1. Mol. Cell. Biol. 23, 4713– 4727 (2003). 12808109 PMC164841
- Lerner M.. MiRNA-27a controls FBW7/hCDC4-dependent cyclin E degradation and cell cycle progression. Cell cycle 10, 2172– 2183 (2011). 21597324
- van Uden P.. Evolutionary conserved regulation of HIF-1β by NF-kappaB. PLoS Genet. 7, e1001285 (2011). 21298084 PMC3029248
- Den Boer M. L.. A subtype of childhood acute lymphoblastic leukaemia with poor treatment outcome: a genome-wide classification study. Lancet Oncol. 10, 125– 134 (2009). 19138562 PMC2707020
- Eriksson H.. Quantitative membrane proteomics applying narrow range peptide isoelectric focusing for studies of small cell lung cancer resistance mechanisms. Proteomics 8, 3008– 3018 (2008). 18654985
- Ongoing and future developments at the Universal Protein Resource. Nucleic Acids Res. 39, D214– D219 (2011). 21051339 PMC3013648
- Tusher V. G., Tibshirani R. & Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc. Natl Acad. Sci. USA 98, 5116– 5121 (2001). 11309499 PMC33173
Cited by
Sorted by citations
Hwang, S.-K., Baker, A. R., Young, M. R., & Colburn, N. H. (2014) · Carcinogenesis · doi:10.1093/carcin/bgu008 · Cited by 49 · see citing works
- Authors
- Arabi, A., Ullah, K., Branca, R. M. M., Johansson, J., Bandarra, D., Haneklaus, M., Fu, J., Ariës, I., Nilsson, P., Den Boer, M. L., Pokrovskaja, K., Grandér, D., Xiao, G., Rocha, S., Lehtiö, J., & Sangfelt, O.
- Affiliations
- Karolinska Institutet (SE)
- Science for Life Laboratory (SE)
- University of Dundee (GB)
- University of Pittsburgh (US)
- Corresponding author
- Arabi, Azadeh
- Sangfelt, Olle
- ORCID
- Venue
- Nature Communications
- Published
- 2012-07-31
- Volume
- 3
- Issue
- 1
- Pages
- 976-976
- ISSN
- 2041-1723 (ISSN-L)
- PMC
- PMC4354031
- OpenAlex
- W2021056570
- Cited by
- 90
- References
- 3
- Citations by year
- 2026: 1 · 2025: 2 · 2024: 1 · 2023: 4 · 2022: 6 · 2021: 6 · 2020: 11 · 2019: 11 · 2018: 5 · 2017: 6 · 2016: 8 · 2015: 6 · 2014: 9 · 2013: 12 · 2012: 2
- FWCI
- 3.08
- Type
- journal article
- Language
- en
- Open access
- hybrid
- doi.org
- Licence
- Locations
- Nature Communications (publishedVersion, cc-by-nc-sa)
- PubMed Central (publishedVersion, cc-by-nc-sa)
- PubMed (publishedVersion)
- RePEc: Research Papers in Economics (submittedVersion)
- Discovery Research Portal (University of Dundee) (submittedVersion)
- Funders
- Swedish Cancer Foundation
- Cancer Research UK (A12918, 12918)
- Cancerfonden
- Karolinska Institutet
- Vetenskapsrådet
- National Institutes of Health
- National Cancer Institute (R01CA116616)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › NF-κB Signaling Pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Ubiquitin and proteasome pathways
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Signaling Pathways in Disease
- Keywords
- FBXW7, NF-κB2, P100, p52, ubiquitin ligase, protein degradation, GSK3β phosphorylation, proteomic screen, apoptosis, tumor suppression
- MeSH terms
- F-Box-WD Repeat-Containing Protein 7, Cell Line, Humans, Phosphorylation, Immunoblotting, Signal Transduction, Cell Cycle Proteins, Computational Biology, Glycogen Synthase Kinase 3, Proteomics, Ubiquitin-Protein Ligases, F-Box Proteins, Cell Line, Tumor, Immunoprecipitation, NF-kappa B p52 Subunit, Tandem Mass Spectrometry
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review