Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue

Shi, Jianxin, Marconett, Crystal N., Duan, Jubao, Hyland, Paula L., Li, Peng, Wang, Zhaoming, Wheeler, William, Zhou, Beiyun +24 more·2014·Nature Communications
DOI 10.1038/ncomms4365

Cited by (155)

Items 101–155 of 155

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    Jie Zheng, Santiago Rodrı́guez, Charles Laurin, Denis A. Baird, Lea Trela-Larsen, Abdullah Mesut Erzurumluoglu, Yi Zheng, Jon White, Claudia Giambartolomei, Delilah Zabaneh et al. · 2016 · Bioinformatics
  3. Novel DNA methylation biomarkers in enhancer regions with chromatin interactions for diagnosis of non‐small‐cell lung cancer
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  5. Genetic variation in CDH13 gene was associated with non-small cell lung cancer (NSCLC): A population-based case-control study
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  7. Bayesian Inference for Mixed Model-Based Genome-Wide Analysis of Expression Quantitative Trait Loci by Gibbs Sampling
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  8. Differentially methylated regions within lung cancer risk loci are enriched in deregulated enhancers
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  10. Investigating the Relationship Between DNA Methylation, Genetic Variation, and Suicide Attempt in Bipolar Disorder
    Aysheh Alrfooh, Lucas G. Casten, Jenny Gringer Richards, John A. Wemmie, Vincent A. Magnotta, Jess G. Fiedorowicz, Jacob J. Michaelson, Aislinn Joanmarie Williams, Marie E. Gaine · 2025 · Archives of Suicide Research
  11. Epigenome Mapping of Human Normal Purified Hepatocytes: Personal Epigenome Variation and Genome–Epigenome Correlation
    Eri Arai, Fumihito Miura, Yasushi Totoki, Satoshi Yamashita, Ying Tian, Masahiro Gotoh, Hidenori Ojima, Hiroyuki Nakagawa, Yoriko Takahashi, Hiromi K. Nakamura et al. · 2018 · Epigenomics
  12. Winner’s curse correction and variable thresholding improve performance of polygenic risk modeling based on genome-wide association study summary-level data
    Jianxin Shi, Ju-Hyun Park, Jubao Duan, Sonja I. Berndt, Winton Moy, Kai Yu, Lei Song, William Wheeler, Xing Hua, Debra T. Silverman et al. · 2016 · bioRxiv (Cold Spring Harbor Laboratory)
  13. Genetic effects on the skin methylome in healthy older twins
    Christopher J. Shore, Sergio Villicaña, Julia S. El-Sayed Moustafa, Amy L. Roberts, David Andrew Gunn, Veronique A. Bataille, Panos Deloukas, Tim D. Spector, Kerrin S. Small, Jordana T. Bell · 2024 · The American Journal of Human Genetics
  14. Exhaustive search for epistatic effects on the human methylome
    Tobias Egli, Vanja Vukojević, Thierry Sengstag, Martin Jacquot, Rubén M. Cabezón, David Coynel, Virginie Freytag, Angela Heck, Christian Vogler, Dominique J.‐F. de Quervain et al. · 2017 · Scientific Reports
  15. Genetics and Population Analysis
    Fotis Tsetsos, Petros Drineas B, Peristera Paschou · 2018 · Elsevier eBooks
  16. Epigenetic Events in Lung Cancer
    Ite A. Laird‐Offringa, Montse Sánchez‐Céspedes · 2018 · Elsevier eBooks
  17. Genetic Architecture of Immune Cell DNA Methylation in the Rhesus Macaque
    Christina E. Costa, Marina M. Watowich, Elisabeth A. Goldman, Kirstin N. Sterner, Josué E. Negrón-Del Valle, Daniel Phillips, Michael L. Platt, Michael J. Montague, Lauren J. N. Brent, James P. Higham et al. · 2024 · Molecular Ecology
  18. Genetic influences on the association between DNA methylation and obesity measures: insights from a twin study design
    Xuanming Hong, Hui Cao, Weihua Cao, Jun Lv, Canqing Yu, Tao Huang, Dianjianyi Sun, Chunxiao Liao, Yuanjie Pang, Runhua Hu et al. · 2025 · Cell & Bioscience
  19. Introduction to Data Types in Epigenomics
    F. Marabita, J. Tegnér, D. Gómez-Cabrero · 2015 · Translational bioinformatics
  20. DNA methylation: its role in transcriptional regulation and association with lung cancer
    Triantafillos Liloglou, Paschalia Pantazi, Amelia Acha‐Sagredo, Alexandra Papaioannou, Georgios Nikolaidis · 2015 · Research and Reports in Biochemistry
  21. Interindividual Variability of DNA Methylation
    Louis Patrick Watanabe, Nicole C. Riddle · 2015 · Elsevier eBooks
  22. Chromatin modification and remodeling in schizophrenia
    Jubao Duan · 2019 · Elsevier eBooks
  23. An atlas of genetic effects on the monocyte methylome across European and African populations
    Wan-Heng Zhang, Xiao Zhang, Chuan Qiu, Zi-Chen Zhang, Kuan-Jui Su, Zhe Luo, Minghui Liu, Bing-Xin Zhao, Lang Wu, Qing Tian et al. · 2024 · medRxiv
  24. METHOD Open Access
    Lasse Maretty, Jonas A. Sibbesen, Anders Krogh · 2014
  25. Neuroepigenomics and Human Disease
    John M. Greally, Eric J. Nestler · 2016 · Elsevier eBooks
  26. Beyond the Transcription Factor: The Under-Studied Role of Epigenomics in Lung Differentiation
    Laurence St. Pierre, Crystal N. Marconett · 2021 · Epigenomics
  27. Additional file 16 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  28. Additional file 1 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  29. Additional file 20 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  30. Additional file 14 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  31. Additional file 6 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  32. Additional file 15 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  33. Additional file 19 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  34. Additional file 7 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  35. Additional file 13 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  36. Additional file 4 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  37. Additional file 3 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  38. Additional file 2 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  39. Additional file 17 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  40. Additional file 18 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  41. Additional file 21 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  42. Additional file 8 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Kerstin Heselmeyer‐Haddad, Noam Auslander, Daniela D. Hirsch, Jordi Camps, Daniel Bronder, Markus A. Brown, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  43. Additional file 1 of Genetic impacts on DNA methylation: research findings and future perspectives
    Sergio Villicaña, Jordana T. Bell · 2021 · Figshare
  44. Additional file 5 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Heselmeyer-Haddad, Kerstin, Auslander, Noam, Hirsch, Daniela, Jordi Camps, Daniel Bronder, Brown, Markus, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  45. Additional file 2 of Profiling the immune epigenome across global cattle breeds
    Jessica Powell, Andrea Talenti, Andressa Fisch, Johanneke Dinie Hemmink, Edith A. Paxton, Philip G. Toye, Santos, Isabel, Beatriz Rossetti Ferreira, Tim Connelley, Morrison, Liam J. et al. · 2024 · Figshare
  46. Additional file 12 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Heselmeyer-Haddad, Kerstin, Auslander, Noam, Hirsch, Daniela, Jordi Camps, Daniel Bronder, Brown, Markus, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  47. Additional file 3 of Profiling the immune epigenome across global cattle breeds
    Jessica Powell, Andrea Talenti, Andressa Fisch, Johanneke Dinie Hemmink, Edith A. Paxton, Philip G. Toye, Isabel Kinney Ferreira de Miranda Santos, Beatriz Rossetti Ferreira, Tim Connelley, Morrison, Liam J. et al. · 2024 · Figshare
  48. Additional file 1 of Profiling the immune epigenome across global cattle breeds
    Jessica Powell, Andrea Talenti, Andressa Fisch, Johanneke Dinie Hemmink, Edith A. Paxton, Philip G. Toye, Santos, Isabel, Beatriz Rossetti Ferreira, Tim Connelley, Morrison, Liam J. et al. · 2024 · Figshare
  49. Additional file 11 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Heselmeyer-Haddad, Kerstin, Auslander, Noam, Hirsch, Daniela, Jordi Camps, Daniel Bronder, Brown, Markus, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  50. Additional file 10 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Heselmeyer-Haddad, Kerstin, Noam Auslander, Hirsch, Daniela, Jordi Camps, Daniel Bronder, Brown, Markus, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  51. Additional file 9 of Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies
    Sushant Patkar, Heselmeyer-Haddad, Kerstin, Auslander, Noam, Hirsch, Daniela, Jordi Camps, Daniel Bronder, Brown, Markus, Wei-dong D. Chen, Rachel Adihe Lokanga, Darawalee Wangsa et al. · 2021 · Figshare
  52. Additional file 4 of Profiling the immune epigenome across global cattle breeds
    Jessica Powell, Andrea Talenti, Andressa Fisch, Johanneke Dinie Hemmink, Edith A. Paxton, Philip G. Toye, Isabel Kinney Ferreira de Miranda Santos, Beatriz Rossetti Ferreira, Tim Connelley, Morrison, Liam J. et al. · 2024 · Figshare
  53. An atlas of genetic effects on the monocyte methylome across European and African populations
    Wanheng Zhang, Chuan Qiu, Xiao Zhang, Zichen Zhang, Kuan‐Jui Su, Zhe Luo, Minghui Liu, Bingxin Zhao, Lang Wu, Qing Tian et al. · 2026 · Genome Medicine
  54. Épidémiologie épi-génétique de biomarqueurs du risque cardiovasculaire : intérêt de l’étude de la méthylation de l’ADN à partir d’échantillons sanguins
    Dylan Aïssi · 2015 · theses.fr (ABES)
  55. Étude de la méthylation des gènes STAT3, IL2RA et CDH1 dans la maladie de Crohn iléale
    Solafah Abdalla · 2023 · theses.fr (ABES)