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A genomic atlas of systemic interindividual epigenetic variation in humans

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Epigenetic supersimilarity of monozygotic twin pairs

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Human Lung DNA Methylation Quantitative Trait Loci Colocalize with Chronic Obstructive Pulmonary Disease Genome-Wide Association Loci

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Leveraging gene-environment interactions and endotypes for asthma gene discovery

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Epigenome-wide analysis of DNA methylation in lung tissue shows concordance with blood studies and identifies tobacco smoke-inducible enhancers

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A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data

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Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33

Wang, Z., Zhu, B., Zhang, M., Parikh, H. M., Jia, J., Chung, C. C., Sampson, J. N., Hoskins, J. W., Hutchinson, A. A., Burdette, L. A., et al. (2014) · Human Molecular Genetics · doi:10.1093/hmg/ddu363 · Cited by 104 · see citing works

DNA methylation profiling in human lung tissue identifies genes associated with COPD

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Genetic variation at 16q24.2 is associated with small vessel stroke

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Kidney cytosine methylation changes improve renal function decline estimation in patients with diabetic kidney disease

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Cell-type–specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genesPreprint

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Cross-tissue integration of genetic and epigenetic data offers insight into autism spectrum disorder

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Association between fetal exposure to phthalate endocrine disruptor and genome-wide DNA methylation at birth

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Genetic variants influence on the placenta regulatory landscape

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Appraising the causal relevance of DNA methylation for risk of lung cancer

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Mendelian Randomization Analysis Identifies CpG Sites as Putative Mediators for Genetic Influences on Cardiovascular Disease Risk

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Glyco-genes change expression in cancer through aberrant methylation

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Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human cancer

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Maximizing ecological and evolutionary insight in bisulfite sequencing data sets

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Mendelian Randomization: Applications and Limitations in Epigenetic Studies

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A Multi-Omics Perspective of Quantitative Trait Loci in Precision Medicine

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DNA Methylation Analysis of the COVID-19 Host Cell Receptor, Angiotensin I Converting Enzyme 2 Gene (ACE2) in the Respiratory System Reveal Age and Gender DifferencesPreprint

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Genetically Predicted Levels of DNA Methylation Biomarkers and Breast Cancer Risk: Data From 228 951 Women of European Descent

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DNA methylation changes in epithelial ovarian cancer histotypes

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Role of ATG 10 expression quantitative trait loci in non‐small cell lung cancer survival

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Methylation quantitative trait locus analysis of osteoarthritis links epigenetics with genetic risk

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Genome-wide analysis of DNA methylation in buccal cells: a study of monozygotic twins and mQTLs

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Prioritization of PLEC and GRINA as Osteoarthritis Risk Genes Through the Identification and Characterization of Novel Methylation Quantitative Trait Loci

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Population and allelic variation of A-to-I RNA editing in human transcriptomes

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Colocalization of Gene Expression and DNA Methylation with Genetic Risk Variants Supports Functional Roles of MUC5B and DSP in Idiopathic Pulmonary Fibrosis

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Epigenome-wide association data implicates DNA methylation-mediated genetic risk in psoriasis

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meQTL mapping in the GENOA study reveals genetic determinants of DNA methylation in African Americans

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Analysis of blood methylation quantitative trait loci in East Asians reveals ancestry-specific impacts on complex traits

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CDH13 promoter SNPs with pleiotropic effect on cardiometabolic parameters represent methylation QTLs

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Genetic and Environmental Impacts on DNA Methylation Levels in Twins

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Integrating genome-wide association study and expression quantitative trait loci data identifies NEGR1 as a causal risk gene of major depression disorder

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Allele-specific DNA methylation is increased in cancers and its dense mapping in normal plus neoplastic cells increases the yield of disease-associated regulatory SNPs

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MicrobiomeGWAS: A Tool for Identifying Host Genetic Variants Associated with Microbiome Composition

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Association of CNVs with methylation variation

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A pooling-based approach to mapping genetic variants associated with DNA methylationPreprint

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Deciphering associations for lung cancer risk through imputation and analysis of 12 316 cases and 16 831 controls

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Hard wiring of normal tissue-specific chromosome-wide gene expression levels is an additional factor driving cancer type-specific aneuploidies

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Profiling the immune epigenome across global cattle breeds

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Genetic and epigenetic regulation of YKL-40 in childhood

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The influences of genetic and environmental factors on methylome-wide association studies for human diseases

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Regulation of DNA methylation signatures on NF-κB and STAT3 pathway genes and TET activity in cigarette smoke extract–challenged cells/COPD exacerbation model in vitro

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Genetic variation in one-carbon metabolism in relation to genome-wide DNA methylation in breast tissue from healthy women

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DNA Methylation is Predictive of Mortality in Current and Former Smokers

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Epigenome-wide association study of DNA methylation and microRNA expression highlights novel pathways for human complex traits

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Epigenetic regulation of AXL and risk of childhood asthma symptoms

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Use of Mendelian Randomization for Identifying Risk Factors for Brain Tumors

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The Importance of Detailed Epigenomic Profiling of Different Cell Types within Organs

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Epigenetic silencing of downstream genes mediated by tandem orientation in lung cancer

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Cell-type-specific meQTLs extend melanoma GWAS annotation beyond eQTLs and inform melanocyte gene-regulatory mechanisms

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A novel HIF1α-STIL-FOXM1 axis regulates tumor metastasis

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Open chromatin dynamics reveals stage-specific transcriptional networks in hiPSC-based neurodevelopmental model

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Dissecting the association of autophagy-related genes with cardiovascular diseases and intermediate vascular traits: A population-based approach

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15q12 Variants, Sputum Gene Promoter Hypermethylation, and Lung Cancer Risk: A GWAS in Smokers

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An alternative approach to multiple testing for methylation QTL mapping reduces the proportion of falsely identified CpGs

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Genetic regulation of differentially methylated genes in visceral adipose tissue of severely obese men discordant for the metabolic syndrome

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Tissue-Specific Trans Regulation of the Mouse Epigenome

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IMAGE: high-powered detection of genetic effects on DNA methylation using integrated methylation QTL mapping and allele-specific analysis

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Epigenetic variation in light of population genetic practice

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Integration analysis of methylation quantitative trait loci and GWAS identify three schizophrenia risk variants

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Multi‐omics integrative analysis identified SNP‐methylation‐mRNA: Interaction in peripheral blood mononuclear cells

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High-throughput characterization of functional variants highlights heterogeneity and polygenicity underlying lung cancer susceptibility

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Quantitative assessment of the diagnostic role of FHIT promoter methylation in non-small cell lung cancer

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Path from schizophrenia genomics to biology: gene regulation and perturbation in neurons derived from induced pluripotent stem cells and genome editing

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Methylation quantitative trait loci analysis in Korean exposome study

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Collapsed methylation quantitative trait loci analysis for low frequency and rare variants

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Integrating brain methylome with GWAS for psychiatric risk gene discoveryPreprint

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Relation between Established Glioma Risk Variants and DNA Methylation in the Tumor

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Expression and Clinical Significance of SARS-CoV-2 Human Targets in Neoplastic and Non-Neoplastic Lung Tissues

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CONFINED: distinguishing biological from technical sources of variation by leveraging multiple methylation datasets

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Comprehensive analysis of gene expression and DNA methylation data identifies potential biomarkers and functional epigenetic modules for lung adenocarcinoma

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Investigating the prediction of CpG methylation levels from SNP genotype data to help elucidate relationships between methylation, gene expression and complex traits

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Genetic regulation of THBS1 methylation in diabetic retinopathy

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Implication of a Chromosome 15q15.2 Locus in Regulating UBR1 and Predisposing Smokers to MGMT Methylation in Lung

Leng, S., Wu, G., Collins, L. B., Thomas, C. L., Tellez, C. S., Jauregui, A. R., Picchi, M. A., Zhang, X., Juri, D. E., Desai, D. H., et al. (2015) · Cancer Research · doi:10.1158/0008-5472.can-15-0243 · Cited by 9 · see citing works

Cell-type specific eQTL of primary melanocytes facilitates identification of melanoma susceptibility genesPreprint

Zhang, T., Choi, J., Kovacs, M. A., Shi, J., Xu, M., Program, N. C. S., Goldstein, A. M., Iles, M. M., Duffy, D. L., MacGregor, S., et al. (2017) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/231423 · Cited by 9 · see citing works

The effect of 5-fluorouracil/leucovorin chemotherapy on CpG methylation, or the confounding role of leukocyte heterogeneity: An illustration

Lemire, M., Zaidi, S. H. E., Zanke, B. W., Gallinger, S., Hudson, T. J., & Cleary, S. P. (2015) · Genomics · doi:10.1016/j.ygeno.2015.09.003 · Cited by 8 · see citing works

A Perspective of the Cross-Tissue Interplay of Genetics, Epigenetics, and Transcriptomics, and Their Relation to Brain Based Phenotypes in Schizophrenia

Liu, J., Chen, J., Perrone‐Bizzozero, N. I., & Calhoun, V. D. (2018) · Frontiers in Genetics · doi:10.3389/fgene.2018.00343 · Cited by 8 · see citing works

The effect of type 1 diabetes protection and susceptibility associated HLA class II genotypes on DNA methylation in immune cells

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Promoter hypermethylation of Y-chromosome gene PRKY as a potential biomarker for the early diagnosis of prostate cancer

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Abstract 287: Characterizing the genetic basis of methylome diversity in histologically normal human lung tissue

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Identification of methylation QTLs in breast cancer characterises the influence of germline SNP variation on the abnormal tumour methylome

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Linkage of DNA Methylation Quantitative Trait Loci to Human Cancer Risk

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Abstract 5319: Genetic regulation of DNA methylation in breast cancer

Lin, N., Shendre, A., Liu, J., Wang, C., Liu, Y., & He, C. (2018) · Cancer Research · doi:10.1158/1538-7445.am2018-5319

Genetic impacts on DNA methylation help elucidate regulatory genomic processes

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