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Control of cotton fibre elongation by a homeodomain transcription factor GhHOX3
Open accessAbstract
Cotton fibres are unusually long, single-celled epidermal seed trichomes and a model for plant cell growth, but little is known about the regulation of fibre cell elongation. Here we report that a homeodomain-leucine zipper (HD-ZIP) transcription factor, GhHOX3, controls cotton fibre elongation.GhHOX3 genes are localized to the 12th homoeologous chromosome set of allotetraploid cotton cultivars, associated with quantitative trait loci (QTLs) for fibre length. Silencing of GhHOX3 greatly reduces (>80%) fibre length, whereas its overexpression leads to longer fibre. Combined transcriptomic and biochemical analyses identify target genes of GhHOX3 that also contain the L1-box cis-element, including two cell wall loosening protein genes GhRDL1 and GhEXPA1. GhHOX3 interacts with GhHD1, another homeodomain protein, resulting in enhanced transcriptional activity, and with cotton DELLA, GhSLR1, repressor of the growth hormone gibberellin (GA). GhSLR1 interferes with the GhHOX3–GhHD1 interaction and represses target gene transcription. Our results uncover a novel mechanism whereby a homeodomain protein transduces GA signal to promote fibre cell elongation.
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Cites
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Mortazavi, A., Williams, B. A., McCue, K., Schaeffer, L., & Wold, B. (2008) · Nature Methods · doi:10.1038/nmeth.1226 · Cited by 13,696
The control of the false discovery rate in multiple testing under dependency
Benjamini, Y., & Yekutieli, D. (2001) · The Annals of Statistics · doi:10.1214/aos/1013699998 · Cited by 10,490
SOAP2: an improved ultrafast tool for short read alignment
Li, R., Yu, C., Li, Y., Lam, T.-W., Yiu, S.-M., Kristiansen, K., & Wang, J. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp336 · Cited by 3,760
Firefly Luciferase Complementation Imaging Assay for Protein-Protein Interactions in Plants
Chen, H., Zou, Y., Shang, Y., Lin, H., Wang, Y., Cai, R., Tang, X., & Zhou, J.-M. (2008) · Plant Physiology · doi:10.1104/pp.107.111740 · Cited by 1,525
Mao, Y.-B., Cai, W.-J., Wang, J.-W., Hong, G.-J., Tao, X.-Y., Wang, L.-J., Huang, Y.-P., & Chen, X.-Y. (2007) · Nature Biotechnology · doi:10.1038/nbt1352 · Cited by 1,358
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
Paterson, A. H., Wendel, J. F., Gundlach, H., Guo, H., Jenkins, J., Jin, D., Llewellyn, D., Showmaker, K. C., Shu, S., Udall, J., et al. (2012) · Nature · doi:10.1038/nature11798 · Cited by 1,332
Self-citationA molecular framework for light and gibberellin control of cell elongation
de Lucas, M., Davière, J.-M., Rodríguez-Falcón, M., Pontin, M., Iglesias-Pedraz, J. M., Lorrain, S., Fankhauser, C., Blázquez, M. A., Titarenko, E., & Prat, S. (2008) · Nature · doi:10.1038/nature06520 · Cited by 1,319
PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors
Jin, J., Zhang, H., Kong, L., Gao, G., & Luo, J. (2014) · Nucleic Acids Research · doi:10.1093/nar/gkt1016 · Cited by 963
Gou, J.-Y., Felippes, F. F., Liu, C.-J., Weigel, D., & Wang, J.-W. (2011) · The Plant Cell · doi:10.1105/tpc.111.084525 · Cited by 953
A rapid CTAB DNA isolation technique useful for RAPD fingerprinting and other PCR applications.
Stewart, C. N., & Via, L. E. (1993) · PubMed · Cited by 913
Photoexcited CRY2 Interacts with CIB1 to Regulate Transcription and Floral Initiation in Arabidopsis
Liu, H., Yu, X., Li, K., Klejnot, J., Yang, H., Lisiero, D., & Lin, C. (2008) · Science · doi:10.1126/science.1163927 · Cited by 719
Kim, H. J., & Triplett, B. A. (2001) · Plant Physiology · doi:10.1104/pp.010724 · Cited by 709
The true story of the HD-Zip family
Ariel, F. D., Manavella, P. A., Dezar, C. A., & Chan, R. L. (2007) · Trends in Plant Science · doi:10.1016/j.tplants.2007.08.003 · Cited by 690
Shi, Y.-H., Zhu, S.-W., Mao, X.-Z., Feng, J.-X., Qin, Y.-M., Zhang, L., Cheng, J., Wei, L.-P., Wang, Z.-Y., & Zhu, Y.-X. (2006) · The Plant Cell · doi:10.1105/tpc.105.040303 · Cited by 578
Johansen, L. K., & Carrington, J. C. (2001) · Plant Physiology · doi:10.1104/pp.126.3.930 · Cited by 506
Ruan, Y.-L., Llewellyn, D. J., & Furbank, R. T. (2003) · The Plant Cell · doi:10.1105/tpc.010108 · Cited by 500
Repressing a Repressor: Gibberellin-Induced Rapid Reduction of the RGA Protein in Arabidopsis
Silverstone, A. L., Jung, H.-S., Dill, A., Kawaide, H., Kamiya, Y., & Sun, T.-P. (2001) · The Plant Cell · doi:10.1105/tpc.010047 · Cited by 472
Control of Plant Trichome Development by a Cotton Fiber MYB Gene[W]
Wang, S., Wang, J.-W., Yu, N., Li, C.-H., Luo, B., Gou, J.-Y., Wang, L.-J., & Chen, X.-Y. (2004) · The Plant Cell · doi:10.1105/tpc.104.024844 · Cited by 371
Self-citationYu, H., Chen, X., Hong, Y.-Y., Wang, Y., Xu, P., Ke, S.-D., Liu, H.-Y., Zhu, J.-K., Oliver, D. J., & Xiang, C.-B. (2008) · The Plant Cell · doi:10.1105/tpc.108.058263 · Cited by 367
Self-citationEvidence for Nuclear Processing of Plant Micro RNA and Short Interfering RNA Precursors
Papp, I., Mette, M. F., Aufsatz, W., Daxinger, L., Schauer, S. E., Ray, A., van der Winden, J., Matzke, M., & Matzke, A. J. M. (2003) · Plant Physiology · doi:10.1104/pp.103.021980 · Cited by 364
Characterization of the Class IV Homeodomain-Leucine Zipper Gene Family in Arabidopsis
Nakamura, M., Katsumata, H., Abe, M., Yabe, N., Komeda, Y., Yamamoto, K. T., & Takahashi, T. (2006) · Plant Physiology · doi:10.1104/pp.106.077388 · Cited by 346
Harberd, N. P., Belfield, E., & Yasumura, Y. (2009) · The Plant Cell · doi:10.1105/tpc.109.066969 · Cited by 345
THE EFFECTS OF PLANT GROWTH SUBSTANCES ON IN VITRO FIBER DEVELOPMENT FROM FERTILIZED COTTON OVULES
Beasley, C. A., & Ting, I. P. (1973) · American Journal of Botany · doi:10.1002/j.1537-2197.1973.tb10209.x · Cited by 334
The MYB transcription factor GhMYB25 regulates early fibre and trichome development
Machado, A., Wu, Y., Yang, Y., Llewellyn, D. J., & Dennis, E. S. (2009) · The Plant Journal · doi:10.1111/j.1365-313x.2009.03847.x · Cited by 334
Repressing a Repressor: Gibberellin-Induced Rapid Reduction of the RGA Protein in Arabidopsis
Silverstone, A. L. (2001) · THE PLANT CELL ONLINE · doi:10.1105/tpc.13.7.1555 · Cited by 326
GhMYB25‐like: a key factor in early cotton fibre development
Walford, S., Wu, Y., Llewellyn, D. J., & Dennis, E. S. (2011) · The Plant Journal · doi:10.1111/j.1365-313x.2010.04464.x · Cited by 283
Yu, L., Chen, X., Wang, Z., Wang, S., Wang, Y., Zhu, Q., Li, S., & Xiang, C. (2013) · Plant Physiology · doi:10.1104/pp.113.217596 · Cited by 224
Self-citationA protocol for TILLING and Ecotilling in plants and animals
Till, B. J., Zerr, T., Comai, L., & Henikoff, S. (2006) · Nature Protocols · doi:10.1038/nprot.2006.329 · Cited by 218
Samuel Yang, S., Cheung, F., Lee, J. J., Ha, M., Wei, N. E., Sze, S., Stelly, D. M., Thaxton, P., Triplett, B., Town, C. D., et al. (2006) · The Plant Journal · doi:10.1111/j.1365-313x.2006.02829.x · Cited by 213
EFFECTS OF PLANT GROWTH SUBSTANCES ON IN VITRO FIBER DEVELOPMENT FROM UNFERTILIZED COTTON OVULES
Beasley, C. A., & Ting, I. P. (1974) · American Journal of Botany · doi:10.1002/j.1537-2197.1974.tb06045.x · Cited by 177
The HD‐Zip IV gene GaHOX1 from cotton is a functional homologue of the Arabidopsis GLABRA2
Guan, X., Li, Q., Shan, C., Wang, S., Mao, Y., Wang, L., & Chen, X. (2008) · Physiologia Plantarum · doi:10.1111/j.1399-3054.2008.01115.x · Cited by 170
Self-citationEpidermal cell differentiation in cotton mediated by the homeodomain leucine zipper gene, GhHD‐1
Walford, S., Wu, Y., Llewellyn, D. J., & Dennis, E. S. (2012) · The Plant Journal · doi:10.1111/j.1365-313x.2012.05003.x · Cited by 170
Rombolá-Caldentey, B., Rueda-Romero, P., Iglesias‐Fernández, R., Carbonero, P., & Oñate‐Sánchez, L. (2014) · The Plant Cell · doi:10.1105/tpc.114.127647 · Cited by 106
Shangguan, X., Xu, B., Yu, Z.-X., Wang, L.-J., & Chen, X. (2008) · Journal of Experimental Botany · doi:10.1093/jxb/ern204 · Cited by 93
Self-citationSong, X., Wang, K., Guo, W., Zhang, J., & Zhang, T. (2005) · Genome · doi:10.1139/g04-126 · Cited by 92
Self-citationCharacterization of two NADPH: Cytochrome P450 reductases from cotton (Gossypium hirsutum)
Yang, C., Lu, S., Mao, Y., et al. (2009) · Phytochemistry · doi:10.1016/j.phytochem.2009.09.026 · Cited by 48
Self-citationKadaru, S. B., Yadav, A. S., Fjellstrom, R. G., & Oard, J. H. (2006) · Plant Molecular Biology Reporter · doi:10.1007/bf02914042 · Cited by 37
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Metadata
- Authors
- Shan, C.-M., Shangguan, X.-X., Zhao, B., Zhang, X.-F., Chao, L.-M., Yang, C.-Q., Wang, L.-J., Zhu, H.-Y., Zeng, Y.-D., Guo, W.-Z., Zhou, B.-L., Hu, G.-J., Guan, X.-Y., Chen, Z. J., Wendel, J. F., Zhang, T.-Z., & Chen, X.-Y.
- Venue
- Nature Communications
- Published
- 2014-11-21
- Volume
- 5
- Issue
- 1
- Pages
- 5519-5519
- ISSN
- 2041-1723 (ISSN-L)
- OpenAlex
- W2035523956
- Cited by
- 296
- References
- 37
- FWCI
- 14.78
- Type
- journal article
- Language
- en
- Open access
- hybrid
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