The DOI matches its Crossref record; 42 of the 42 references it cites were found in a registry or an index.
The duck genome and transcriptome provide insight into an avian influenza virus reservoir species
Open accessAbstract
Ning Li and colleagues report the whole-genome sequence of the duck, Anas platyrhynchos, a natural host of avian influenza viruses. They examine host response to infection by comparing the lung transcriptomes of ducks that were infected with influenza A viruses. The duck (Anas platyrhynchos) is one of the principal natural hosts of influenza A viruses. We present the duck genome sequence and perform deep transcriptome analyses to investigate immune-related genes. Our data indicate that the duck possesses a contractive immune gene repertoire, as in chicken and zebra finch, and this repertoire has been shaped through lineage-specific duplications. We identify genes that are responsive to influenza A viruses using the lung transcriptomes of control ducks and ones that were infected with either a highly pathogenic (A/duck/Hubei/49/05) or a weakly pathogenic (A/goose/Hubei/65/05) H5N1 virus. Further, we show how the duck's defense mechanisms against influenza infection have been optimized through the diversification of its β-defensin and butyrophilin-like repertoires. These analyses, in combination with the genomic and transcriptomic data, provide a resource for characterizing the interaction between host and influenza viruses.
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Self-citationComparative genomics reveals insights into avian genome evolution and adaptation
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Metadata
- Authors
- Huang, Y., Li, Y., Burt, D. W., Chen, H., Zhang, Y., Qian, W., Kim, H., Gan, S., Zhao, Y., Li, J., Yi, K., Feng, H., Zhu, P., Li, B., Liu, Q., Fairley, S., Magor, K. E., Du, Z., Hu, X., Goodman, L., Tafer, H., Vignal, A., Lee, T., Kim, K.-W., Sheng, Z., An, Y., Searle, S., Herrero, J., Groenen, M. A. M., Crooijmans, R. P. M. A., Faraut, T., Cai, Q., Webster, R. G., Aldridge, J. R., Warren, W. C., Bartschat, S., Kehr, S., Marz, M., Stadler, P. F., Smith, J., Kraus, R. H. S., Zhao, Y., Ren, L., Fei, J., Morisson, M., Kaiser, P., Griffin, D. K., Rao, M., Pitel, F., Wang, J., & Li, N.
- Venue
- Nature Genetics
- Published
- 2013-06-09
- Volume
- 45
- Issue
- 7
- Pages
- 776-783
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2122016967
- Cited by
- 405
- References
- 42
- FWCI
- 26.38
- Type
- journal article
- Language
- en
- Open access
- hybrid
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- Huang, Y., Li, Y., Burt, D. W., Chen, H., Zhang, Y., Qian, W., Kim, H., Gan, S., Zhao, Y., Li, J., Yi, K., Feng, H., Zhu, P., Li, B., Liu, Q., Fairley, S., Magor, K. E., Du, Z., Hu, X., . . . Li, N. (2013). The duck genome and transcriptome provide insight into an avian influenza virus reservoir species. Nature Genetics. https://doi.org/10.1038/ng.2657
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