Genome-wide analysis of noncoding regulatory mutations in cancer
Weinhold, Nils, Jacobsen, Anders, Schultz, Nikolaus, Sander, Chris, Lee, William·2014·Nature Genetics
DOI 10.1038/ng.3101
Cited by (486)
Items 301–400 of 486
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- Cis-regulatory mutations with driver hallmarks in major cancersZhongshan Cheng, Michael Vermeulen, Micheal Rollins-Green, Brian DeVeale, Tomas Babak · 2021 · iScience
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- Network perturbation by recurrent regulatory variants in cancerKiwon Jang, Kwoneel Kim, Ara Cho, Insuk Lee, Jung Kyoon Choi · 2017 · PLoS Computational Biology
- Applications of ENCODE data to systematic analyses via data integrationYanding Zhao, Evelien Schaafsma, Chao Cheng · 2018 · Current Opinion in Systems Biology
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- The Genome in a Three-Dimensional Context: Deciphering the Contribution of Noncoding Mutations at Enhancers to Blood CancerLlorenç Rovirosa, Alberto Ramos-Morales, Biola M. Javierre · 2020 · Frontiers in Immunology
- SMDB: pivotal somatic sequence alterations reprogramming regulatory cascadesLimin Jiang, Mingrui Duan, Fei Guo, Jijun Tang, Olufunmilola Oyebamiji, Hui Yu, Scott A. Ness, Ying‐Yong Zhao, Peng Mao, Yan Ping Guo · 2020 · NAR Cancer
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- BayesPI-BAR2: A New Python Package for Predicting Functional Non-coding Mutations in Cancer Patient CohortsKirill Batmanov, Jan Delabie, Junbai Wang · 2019 · Frontiers in Genetics
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- Allelic mutations in noncoding genomic sequences construct novel transcription factor binding sites that promote gene overexpressionErming Tian, Magne Børset, Jeffrey R. Sawyer, Gaute Brede, Thea Kristin Våtsveen, Håkon Hov, Anders Waage, Bart Barlogie, John D. Shaughnessy, Joshua Epstein et al. · 2015 · Genes Chromosomes and Cancer
- Defects of the Carney complex gene (PRKAR1A) in odontogenic tumorsSílvia Ferreira de Sousa, Ricardo Santiago Gomez, Marina Gonçalves Diniz, Vanessa Fátima Bernardes, Flávia Fonseca Carvalho Soares, João Artur Ricieri Brito, Sophie N. Liu, Hélder Antônio Rebelo Pontes, Constantine A. Stratakis, Carolina Cavaliéri Gomes · 2015 · Endocrine Related Cancer
- Altérations moléculaires au cours de la carcinogenèse urothéliale vésicaleG. Pignot, Constance le Goux, Ivan Bièche · 2015 · Bulletin du Cancer
- Quantitative Trait Loci Identify Functional Noncoding Variation in CancerHolger Heyn · 2016 · PLoS Genetics
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- NIMBus: a negative binomial regression based Integrative Method for mutation Burden AnalysisJing Zhang, Jason J. Liu, Patrick D. McGillivray, Caroline Yi, Lucas Lochovsky, Donghoon Lee, Mark Gerstein · 2020 · BMC Bioinformatics
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- Using evolutionary constraint to define novel candidate driver genes in medulloblastomaAnanya Roy, Sharadha Sakthikumar, Sergey V. Kozyrev, Jessika Nordin, Raphaela Pensch, Suvi Mäkeläinen, Mats E. Pettersson, Elinor K. Karlsson, Kerstin Lindblad‐Toh, Karin Forsberg‐Nilsson et al. · 2023 · Proceedings of the National Academy of Sciences
- Genome stability: An evolutionary perspectiveIgor Kovalchuk · 2021 · Elsevier eBooks
- Intrinsic Molecular Processes: Impact on MutagenesisByungho Lim, Jihyeob Mun, Seon‐Young Kim · 2017 · Trends in cancer
- Novel Mutation Hotspots within Non-Coding Regulatory Regions of the Chronic Lymphocytic Leukemia GenomeAdrián Mosquera Orgueira, Beatriz Antelo Rodríguez, José Ángel Díaz Arias, Nicolas A Diaz Varela, Natalia Alonso Vence, Marta Sonia González, Jose Luís Bello López · 2020 · Scientific Reports
- A comprehensive analysis of cancer-driving mutations and genes in kidney cancerChengmei Long, Jinbo Jian, Xinchang Li, Gongxian Wang, Jingen Wang · 2017 · Oncology Letters
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- Germline mutations predisposing to melanoma and associated malignancies and syndromes: a narrative reviewIrene López Riquelme, Silvestre Martínez García, Ana Serrano Ordóñez, Leandro Martínez Pilar · 2024 · International Journal of Dermatology
- TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed EnhancersDimitrios Kleftogiannis, Haitham Ashoor, Nikolaos Zarokanellos, Vladimir B. Bajić · 2018 · Genomics Proteomics & Bioinformatics
- Deciphering the Functions of Telomerase Reverse Transcriptase in Head and Neck CancerTsung‐Jang Yeh, Chi‐Wen Luo, Jeng‐Shiun Du, Chien-Tzu Huang, Min-Hung Wang, Benjamin Tzer-Ming Chuang, Yuh‐Ching Gau, Shih‐Feng Cho, Yi‐Chang Liu, Hui‐Hua Hsiao et al. · 2023 · Biomedicines
- SMuRF: a novel tool to identify regulatory elements enriched for somatic point mutationsPaul Guilhamon, Mathieu Lupien · 2018 · BMC Bioinformatics
- Untangling a complex web: Computational analyses of tumor molecular profiles to decode driver mechanismsSirvan Khalighi, Salendra Singh, Vinay Varadan · 2020 · Journal of genetics and genomics/Journal of Genetics and Genomics
- Two ovarian candidate enhancers, identified by time series enhancer RNA analyses, harbor rare genetic variations identified in ovarian insufficiencyRyuichi Nakagawa, Kei Takasawa, Maki Gau, Atsumi Tsuji‐Hosokawa, Hideya Kawaji, Yasuhiro Murakawa, Shuji Takada, Masashi Mikami, Satoshi Narumi, Maki Fukami et al. · 2022 · Human Molecular Genetics
- Whole-genome mutational analysis: cause and effect of noncoding and structural mutations in liver cancerSuchandrima Ghosh, Soma Banerjee · 2017 · HepatoBiliary Surgery and Nutrition
- Prevention of Urinary Bladder Cancer: The Interface Between Experimental and Human Studies.Shoji Fukushima, Hideki Wanibuchi · 2000 · PubMed
- Computational Prediction of Genetic Drivers in CancerAlice B. S. Nono Djotsa, Ken Chen, Xiaoming Liu · 2016 · Encyclopedia of Life Sciences
- Non-canonical secondary structures arising from non-B-DNA motifs are determinants of mutagenesisIlias Georgakopoulos‐Soares, Sandro Morganella, Naman Jain, Martin Hemberg, Serena Nik‐Zainal · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
- Comprehensive Characterization of Somatic Mutation Timing Reveals the Evolutionary Trajectory of Lung Adenocarcinoma in Chinese PatientsNa Qin, Zhoufeng Wang, Xianfeng Xu, Yuan Xie, Yingjia Chen, Wenxin Luo, Pan Tang, Xin Wang, Lingfeng Bi, Linnan Gong et al. · 2025 · Cancer Research
- The Noncoding Mutational Landscape of Pancreatic Cancer Reveals Recurrent Somatic Mutations in Enhancer RegionsAkimasa Hayashi, Yu-Jui Ho, Alvin P. Makohon-Moore, Amanda Zucker, Jungeui Hong, Shigeaki Umeda, Elias-Ramzey R. Karnoub, Jinlong Huang, Priscilla Baez, Rajya L. Kappagantula et al. · 2025 · Cancer Research Communications
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- Loss of XRCC1 promotes cGAS/STING mediated innate immune signaling in gastric cancerAashirwad Shahi, Shengyuan Zhao, Julia A. Goewey Ruiz, Dawit Kidane · 2026 · Molecular Medicine
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- Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE dataNisar Ahmed Shar, M. S. Vijayabaskar, David R. Westhead · 2016 · Molecular Cancer
- Circular RNAs and Untranslated Regions in Acute Myeloid LeukemiaShih-Chia Yeh, Faith J. F. Cheong, Yvonne Tay · 2023 · International Journal of Molecular Sciences
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- Olovnikov, Telomeres, and Telomerase. Is It Possible to Prolong a Healthy Life?Yegor E. Yegorov · 2023 · Biochemistry (Moscow)
- Discriminative identification of transcriptional responses of promoters and enhancers after stimulusDimitrios Kleftogiannis, Panos Kalnis, Erik Arner, Vladimir B. Bajić · 2016 · Nucleic Acids Research
- A functional strategy to characterize expression Quantitative Trait LociElena Grassi, Elisa Mariella, Mattia Forneris, Federico Marotta, Marika Catapano, Ivan Molineris, Paolo Provero · 2017 · Human Genetics
- Motif Disruption Domains Lead To Cancer Gene Expression RewiringFabien Claude Lamaze, Aurélien Chateigner, Hilary A. Edgington, Marie-Julie Favé, Armande Ang Houle, PCAWG3, Philip Awadalla · 2017 · bioRxiv (Cold Spring Harbor Laboratory)
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