Personalized copy number and segmental duplication maps using next-generation sequencing

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Items 101–200 of 748

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   K. Pelak, K. Shianna, D. Ge, J. Maia, Mingfu Zhu, Jason Paul Smith, E. Cirulli, J. Fellay, S. Dickson, C. Gumbs et al. · 2010 · PLoS Genetics
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26. The group fused Lasso for multiple change-point detection
    Kevin Bleakley A, Jean‐Philippe Vert · 2011 · arXiv (Cornell University)
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    Timour Baslan, Jude Kendall, Brian Ward, Hilary Cox, Anthony Leotta, Linda Rodgers, Michael G. Riggs, Sean D'Italia, Guoli Sun, Yong Mao et al. · 2015 · Genome Research
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    Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Johann Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth · 2012 · Bioinformatics
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    Sergii Ivakhno, Tom Royce, Anthony J. Cox, Dirk J. Evers, R. Keira Cheetham, Simon Tavaré · 2010 · Bioinformatics
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    Fereydoun Hormozdiari, Can Alkan, Mario Ventura, Iman Hajirasouliha, Maika Malig, Faraz Hach, Deniz Yörükoğlu, Phuong Dao, Marzieh Bakhshi, S. Cenk Şahinalp et al. · 2010 · Genome Research
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    Enrico Siragusa, David Weese, Knut Reinert · 2013 · Nucleic Acids Research
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    Solena Le Scouarnec, Susan M. Gribble · 2011 · Heredity
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    Yogesh Paudel, Ole Madsen, Hendrik‐Jan Megens, Laurent Frantz, Mirte Bosse, Richard P. M. A. Crooijmans, Martien A. M. Groenen · 2015 · BMC Genomics
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    Alberto Magi, Matteo Benelli, Alessia Gozzini, Francesca Girolami, Francesca Torricelli, Maria Luisa Brandi · 2010 · Genes
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    Renee D. George, Graham McVicker, Rachel Diederich, Sarah Boon Hsi Ng, Alexandra P MacKenzie, Willie J. Swanson, Jay Shendure, James H. Thomas · 2011 · Genome Research
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    Jianxing Feng, Wei Li, Tao Jiang · 2011 · Journal of Computational Biology
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    Lukas F. K. Kuderna, Esther Lizano, Eva Julià, Jèssica Gómez‐Garrido, Aitor Serres Armero, Martin Kuhlwilm, Regina Antoni Alandes, Marina Álvarez-Estapé, David Juan, Simon Charles Heath et al. · 2018 · Nature Communications
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