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Expansion of an unstable trinucleotide CAG repeat in spinocerebellar ataxia type 1
Abstract
Spinocerebellar ataxia type 1 (SCA1) is an autosomal dominant disorder characterized by neurodegeneration of the cerebellum, spinal cord and brainstem. A 1.2-Megabase stretch of DNA from the short arm of chromosome 6 containing the SCA1 locus was isolated in a yeast artificial chromosome contig and subcloned into cosmids. A highly polymorphic CAG repeat was identified in this region and was found to be unstable and expanded in individuals with SCA1. There is a direct correlation between the size of the (CAG)n repeat expansion and the age-of-onset of SCA1, with larger alleles occurring in juvenile cases. We also show that the repeat is present in a 10 kilobase mRNA transcript. SCA1 is therefore the fifth genetic disorder to display a mutational mechanism involving an unstable trinucleotide repeat.
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“spinocerebellar ataxia type 1 (SCA1), a disease caused by a polyglutamine expansion in the protein ATAXIN1 (ATXN1).”
From Polyglutamine Disease Toxicity Is Regulated by Nemo-like Kinase in Spinocerebellar Ataxia Type 1 (2013) · cites this paper as Orr et al., 1993
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BackgroundInfluentialDeepRepeat: direct quantification of short tandem repeats on signal data from nanopore sequencing
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“To date, over 40 neurological disorders have been found to be associated with trinucleotide repeat expansion, including Huntington’s diseases [2], the spinocerebellar ataxias [3], fragile X syndrome”
BackgroundLindsay, E., & Storey, E. (2017) · Brain Sciences · doi:10.3390/brainsci7070083 · Cited by 47
“SCA 1 is due to a cytosine-adenine-guanidine (CAG)n repeat expansion in the ataxin-1 (ATXN1) gene [23], resulting in an expanded polyglutamine (Qn) tract of between 39 and 91 residues.”
BackgroundCell-autonomous and non-cell-autonomous toxicity in polyglutamine diseases
Sambataro, F., & Pennuto, M. (2011) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2011.10.003 · Cited by 45
“Expansions of polyQ tracts in six different genes, known as ataxin-1 (Orr et al., 1993), ataxin-2 (Imbert et al.”
BackgroundVig, P. J., Shao, Q., Subramony, S., Lopez, M. E., & Safaya, E. (2009) · Cerebellum · doi:10.1007/s12311-009-0125-5 · Cited by 44
Tsai, H.-F., Liu, C.-S., Leu, T., Wen, F.-C., Lin, S.-J., Liu, C.-C., Yang, D.-K., Li, C., & Hsieh, M. (2004) · Acta Neurologica Scandinavica · doi:10.1046/j.1600-0404.2003.00229.x · Cited by 44
“To date, at least 13 different loci causing SCAs have been genetically mapped, including the spinocerebellar ataxia type 1 (SCA1) on chromosome 6p (3), SCA2 on 12q (4–6), SCA3/Machado–Joseph disease (MJD) on 14q (7, 8), SCA4 on 16q (9), SCA5 on 11cen (10), SCA6 on 19p (11), SCA7 on 3p (12), SCA8 on 13q (13), SCA10 on…”
BackgroundMosaicism of unstable CAG repeats in the brain of spinocerebellar ataxia type 2
Matsuura, T., Sasaki, H., Yabe, I., Hamada, K., Hamada, T., Shitara, M., & Tashiro, K. (1999) · Journal of Neurology · doi:10.1007/s004150050464 · Cited by 44
Phenotype variation correlates with CAG repeat length in SCA2--a study of 28 Japanese patients.
Sasaki, H., Wakisaka, A., Sanpei, K., Takano, H., Igarashi, S., Ikeuchi, T., Iwabuchi, K., Fukazawa, T., Hamada, T., Yuasa, T., et al. (1998) · Journal of Neurological Sciences · doi:10.1016/s0022-510x(98)00166-x · Cited by 44
Lattante, S., Pomponi, M., Conte, A., Marangi, G., Bisogni, G., Patanella, A. K., Meleo, E., Lunetta, C., Riva, N., Mosca, L., et al. (2017) · Neurobiology of Aging · doi:10.1016/j.neurobiolaging.2017.11.011 · Cited by 43
Studying polyglutamine diseases in Drosophila
Xu, Z., Tito, A. J., Rui, Y., & Zhang, S. (2015) · Experimental Neurology · doi:10.1016/j.expneurol.2015.08.002 · Cited by 41
Petrakis, S., Schaefer, M. H., Wanker, E. E., & Andrade-Navarro, M. A. (2013) · BioEssays · doi:10.1002/bies.201300001 · Cited by 42
“In the case of SCA1, which is caused by mutant ATXN1 protein [4], a gradual atrophy and loss of cerebellar DOI 10.”
BackgroundRequirement for Zebrafish Ataxin-7 in Differentiation of Photoreceptors and Cerebellar Neurons
Yanicostas, C., Barbieri, E., Hibi, M., Brice, A., Stévanin, G., & Soussi‐Yanicostas, N. (2012) · PLoS ONE · doi:10.1371/journal.pone.0050705 · Cited by 47
Late-onset pure cerebellar ataxia: differentiating those with and without identifiable mutations.
Kerber, K., Jen, J., Perlman, S., & Baloh, R. (2005) · Journal of Neurological Sciences · doi:10.1016/j.jns.2005.06.006 · Cited by 43
“All the samples were screened for trinucleotide repeat expansions in the responsible genes for SCA1 [25], SCA2 [26], SCA3 [27], SCA6 [28], SCA8 [29], and fragile X syndrome [30].”
BackgroundSchmucker, B., Ballhausen, W., & Pfeiffer, R. (1996) · Human Genetics · doi:10.1007/s004390050230 · Cited by 43
Bacolla, A., Ulrich, M. J., Larson, J. E., Ley, T., & Wells, R. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.41.24556 · Cited by 43
Propriospinal myoclonus after treatment with ciprofloxacin
Post, B., Koelman, J., & Tijssen, M. (2004) · Movement Disorders · doi:10.1002/mds.10717 · Cited by 42
Hayashi, M., Kobayashi, K., & Furuta, H. (2003) · Psychiatry and Clinical Neurosciences · doi:10.1046/j.1440-1819.2003.01102.x · Cited by 42
Gasser, T., Bressman, S., Dürr, A., Higgins, J., Klockgether, T., & Myers, R. H. (2003) · Movement Disorders · doi:10.1002/mds.10338 · Cited by 42
Adult-onset autosomal recessive ataxia with thalamic lesions in a Finnish family
Rantamaki, M., Krahe, R., Paetau, A., Cormand, B., Mononen, I. T., & Udd, B. (2001) · Neurology · doi:10.1212/wnl.57.6.1043 · Cited by 42
Osteochondrodysplasia in Scottish Fold cats.
Malik, R., Allan, G., Howlett, C., Thompson, D., James, G., McWhirter, C., & Kendall, K. (1999) · Australian Veterinary Journal · doi:10.1111/j.1751-0813.1999.tb11672.x · Cited by 42
Banfi, S., Chung, M., Kwiatkowski, T., Ranum, L., McCall, A., Chinault, A., Orr, H., & Zoghbi, H. (1993) · Genomics · doi:10.1016/s0888-7543(05)80365-9 · Cited by 42
Self-citationAutosomal‐dominant dentatorubropallidoluysian atrophy in the United Kingdom
Warner, T. T., Lennox, G., Janota, I., & Harding, A. (1994) · Movement Disorders · doi:10.1002/mds.870090302 · Cited by 42
Conventional MRI findings in hereditary degenerative ataxias: a pictorial review
Cocozza, S., Pontillo, G., Michele, G. D., Stasi, M. D., Guerriero, E., Perillo, T., Pane, C., Rosa, A. D. D., Ugga, L., & Brunetti, A. (2021) · Neuroradiology · doi:10.1007/s00234-021-02682-2 · Cited by 41
“Affected individuals have 39 or more CAG trinucleotide repeats in the ATXN1 gene, which encodes for the Ataxin1 protein [8].”
BackgroundUsing the shared genetics of dystonia and ataxia to unravel their pathogenesis
Nibbeling, E., Delnooz, C. C. S., de Koning, T. D., Sinke, R., Jinnah, H., Tijssen, M., & Verbeek, D. (2017) · Neuroscience and Biobehavioral Reviews · doi:10.1016/j.neubiorev.2017.01.033 · Cited by 41
Thomas, E. A. (2014) · Pharmaceuticals · doi:10.3390/ph7060634 · Cited by 52
“Spinocerebellar ataxia 1 (SCA1) is caused by glutamine repeat expansion in the ataxin 1 (ATXN1) gene [73].”
BackgroundExome sequencing in an SCA14 family demonstrates its utility in diagnosing heterogeneous diseases
Sailer, A., Scholz, S. W., Gibbs, J. R., Tucci, A., Johnson, J. O., Wood, N., Plagnol, V., Hummerich, H., Ding, J.-H., Hernandez, D., et al. (2012) · Neurology · doi:10.1212/wnl.0b013e31825f048e · Cited by 41
Spinocerebellar ataxias type 1, 2 and 3: a study of heart rate variability
Pradhan, C., Yashavantha, B. S., Pal, P. K., & Sathyaprabha, T. (2008) · Acta Neurologica Scandinavica · doi:10.1111/j.1600-0404.2007.00945.x · Cited by 41
Metabolic characterization of spinocerebellar ataxia type 6.
Soong, B., Liu, R.-S., Wu, L.-C., Lu, Y.-C., & Lee, H.-Y. (2001) · Archives of Neurology · doi:10.1001/archneur.58.2.300 · Cited by 41
Functional analysis of the Huntington's disease (HD) gene promoter.
Coles, R., Caswell, R., & Rubinsztein, D. (1998) · Human Molecular Genetics · doi:10.1093/hmg/7.5.791 · Cited by 41
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Keiser, M. S., Kordower, J. H., Gonzalez‐Alegre, P., & Davidson, B. L. (2015) · Brain · doi:10.1093/brain/awv292 · Cited by 43
“SCA1 is caused by an unstable CAG expansion in the ATXN1 gene which encodes ataxin 1 (Orr et al., 1993; Banfi et al., 1994).”
BackgroundSpeech in spinocerebellar ataxia.
Schalling, E., & Hartelius, L. (2013) · Brain and Language · doi:10.1016/j.bandl.2013.10.002 · Cited by 40
SCA1—Phosphorylation, a regulator of Ataxin-1 function and pathogenesis
Orr, H. T. (2012) · Progress in Neurobiology · doi:10.1016/j.pneurobio.2012.04.003 · Cited by 40
“Spinocerebellar ataxia type 1 (SCA1) joined the ranks of the unstable nucleotide repeat disorders and specifically the CAG/ polyglutamine (polyQ) diseases in 1993 (Orr et al., 1993).”
Self-citationMapping cerebral blood flow during speech production in hereditary ataxia
Sidtis, J. J., Gomez, C. M., Groshong, A., Strother, S. C., & Rottenberg, D. A. (2006) · NeuroImage · doi:10.1016/j.neuroimage.2005.12.005 · Cited by 37
“There were nine SCA1 subjects (Orr et al., 1993), eight SCA5 subjects (Ranum et al., 1994), five SCA6 subjects (Ishikawa et al., 1997; Zhuchenko et al., 1997), and two SCA26 subjects (Yu et al., 2005).”
Sen, S., Dash, D., Pasha, S., & Brahmachari, S. K. (2003) · Protein Science · doi:10.1110/ps.0224403 · Cited by 38
“In case of one of the disease loci, spinocerebellar ataxia type1 (SCA1), the abnormalities is the result of a highly polymorphic CAG repeat stretch in the SCA1 gene located on chromosome 6p23 (Orr et al. 1993).”
BackgroundPiccioni, F., Simeoni, S., Andriola, I., Armatura, E., Bassanini, S., Pozzi, P., & Poletti, A. (2001) · Brain Research Bulletin · doi:10.1016/s0361-9230(01)00652-9 · Cited by 35
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DRPLA gene (atrophin-1) sequence and mRNA expression in human brain.
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Oostra, B. A., & Willems, P. J. (1995) · BioEssays · doi:10.1002/bies.950171107 · Cited by 40
The identification of a functional nuclear localization signal in the Huntington disease protein.
Bessert, D., Gutridge, K., Dunbar, J., & Carlock, L. (1995) · Brain Research. Molecular Brain Research · doi:10.1016/0169-328x(95)00124-b · Cited by 40
Metadata
- Authors
- Orr, H. T., Chung, M.-Y., Banfi, S., Kwiatkowski, T. J., Servadio, A., Beaudet, A. L., McCall, A. E., Duvick, L. A., Ranum, L. P. W., & Zoghbi, H. Y.
- Affiliations
- University of Minnesota (US)
- Baylor College of Medicine (US)
- Howard Hughes Medical Institute (US)
- ORCID
- Venue
- Nature Genetics
- Published
- 1993-07
- Volume
- 4
- Issue
- 3
- Pages
- 221-226
- ISSN
- 1061-4036 (ISSN-L)
- 1546-1718
- OpenAlex
- W2255469197
- Cited by
- 1,632
- References
- 0
- Citations by year
- 2026: 20 · 2025: 24 · 2024: 30 · 2023: 37 · 2022: 45 · 2021: 35 · 2020: 41 · 2019: 27 · 2018: 42 · 2017: 35 · 2016: 23 · 2015: 19 · 2014: 41 · 2013: 50 · 2012: 34
- FWCI
- 40.91
- Type
- journal article
- Language
- en
- Open access
- closed
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Genetics (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Genetic Neurodegenerative Diseases
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetics and Neurodevelopmental Disorders
- Keywords
- spinocerebellar ataxia type 1, CAG repeat expansion, trinucleotide repeat instability, age of onset, chromosome 6, repeat polymorphism, mRNA transcripts, neurodegeneration
- MeSH terms
- Base Sequence, Chromosome Mapping, Chromosomes, Human, Pair 6, Cloning, Molecular, DNA, Female, Humans, Male, Molecular Sequence Data, Oligodeoxyribonucleotides, Pedigree, Repetitive Sequences, Nucleic Acid, Spinocerebellar Degenerations, Transcription, Genetic, Polymerase Chain Reaction
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