The Mycobacterium tuberculosis protein LdtMt2 is a nonclassical transpeptidase required for virulence and resistance to amoxicillin
Open accessAbstract
The peptidoglycan layer is a vital component of the bacterial cell wall. The existing paradigm describes the peptidoglycan network as a static structure that is cross-linked predominantly by 4-->3 transpeptide linkages. However, the nonclassical 3-->3 linkages predominate the transpeptide networking of the peptidoglycan layer of nonreplicating Mycobacterium tuberculosis. The molecular basis of these linkages and their role in the physiology of the peptidoglycan layer, virulence and susceptibility of M. tuberculosis to drugs remain undefined. Here we identify MT2594 as an L,D-transpeptidase that generates 3-->3 linkages in M. tuberculosis. We show that the loss of this protein leads to altered colony morphology, loss of virulence and increased susceptibility to amoxicillin-clavulanate during the chronic phase of infection. This suggests that 3-->3 cross-linking is vital to the physiology of the peptidoglycan layer. Although a functional homolog exists, expression of ldtMt2 is dominant throughout the growth phases of M. tuberculosis. 4-->3 transpeptide linkages are targeted by one of the most widely used classes of antibacterial drugs in human clinical use today, beta-lactams. Recently, meropenem-clavulanate was shown to be effective against drug-resistant M. tuberculosis. Our study suggests that a combination of L,D-transpeptidase and beta-lactamase inhibitors could effectively target persisting bacilli during the chronic phase of tuberculosis.
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LdtA may be upregulated in stasis, and LdtB is required for chronic phase survival.
“Ldta may be upregulated in stasis59, and LdtB is required for chronic phase survival147.”
From The mycobacterial cell envelope — a moving target (2020) · cites this paper as [147]
Citation 147 attaches to the LdtB chronic-survival claim, not the LdtA expression claim. In the paper’s infection-results passage (section labeled Abstract; page unavailable), mice infected with the ldtMt2 mutant still had approximately 10,000 bacteria in their lungs during the persistent stage. The paper reports attenuated persistence, not that this gene is required for survival in that stage. (LLM, conf=0.86)
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Wiegand, I., Hilpert, K., & Hancock, R. E. W. (2008) · Nature Protocols · doi:10.1038/nprot.2007.521 · Cited by 6,156 · see citing works
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- [1]Wietzerbin J Occurrence of D-alanyl-(D)-meso-diaminopimelic acid and meso-diaminopimelyl-meso-diaminopimelic acid interpeptide linkages in the peptidoglycan of Mycobacteria Biochemistry 1974 13 3471 3476 4210702
- [2]Lavollay M The peptidoglycan of stationary-phase Mycobacterium tuberculosis predominantly contains cross-links generated by L,D-transpeptidation J Bacteriol 2008 190 4360 4366 18408028 PMC2446752
- [3]Hugonnet JE Tremblay LW Boshoff HI Barry CE 3rd Blanchard JS Meropenem-clavulanate is effective against extensively drug-resistant Mycobacterium tuberculosis Science (New York, N.Y 2009 323 1215 1218 PMC2679150 19251630
- [4]Fauci AS Multidrug-resistant and extensively drug-resistant tuberculosis: the National Institute of Allergy and Infectious Diseases Research agenda and recommendations for priority research J Infect Dis 2008 197 1493 1498 18426366
- [5]Gandhi NR Extensively drug-resistant tuberculosis as a cause of death in patients co- infected with tuberculosis and HIV in a rural area of South Africa Lancet 2006 368 1575 1580 17084757
- [6]Jindani A Dore CJ Mitchison DA Bactericidal and sterilizing activities of antituberculosis drugs during the first 14 days Am J Respir Crit Care Med 2003 167 1348 1354 12519740
- [7]Wayne LG Sohaskey CD Nonreplicating persistence of mycobacterium tuberculosis Annu Rev Microbiol 2001 55 139 163 11544352
- [8]Betts JC Lukey PT Robb LC McAdam RA Duncan K Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling Mol Microbiol 2002 43 717 731 11929527
- [9]Voskuil MI Inhibition of respiration by nitric oxide induces a Mycobacterium tuberculosis dormancy program J Exp Med 2003 198 705 713 12953092 PMC2194188
- [10]Keren I Shah D Spoering A Kaldalu N Lewis K Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli J Bacteriol 2004 186 8172 8180 15576765 PMC532439
- [11]Goren MB Brennan PJ Youmans GP Tuberculosis 1979 Philadelphia W. B. Saunders 63
- [12]Vollmer W Holtje JV The architecture of the murein (peptidoglycan) in gram-negative bacteria: vertical scaffold or horizontal layer(s)? J Bacteriol 2004 186 5978 5987 15342566 PMC515156
- [13]Matsuhashi M Biosynthesis in the bacterial cell wall Tanpakushitsu kakusan koso 1966 11 875 886 5341387
- [14]Lamichhane G A postgenomic method for predicting essential genes at subsaturation levels of mutagenesis: application to Mycobacterium tuberculosis Proc Natl Acad Sci USA 2003 100 7213 7218 12775759 PMC165855
- [15]Mainardi JL A novel peptidoglycan cross-linking enzyme for a beta-lactam-resistant J Biol Chem 2005 280 38146 38152 16144833
- [16]Lavollay M The β-lactam-sensitive D,D-carboxypeptidase activity of Pbp4 controls the L,D and D,D transpeptidation pathways in Corynebacterium jeikeium Mol Microbiol 2009 In press 19807868
- [17]Hugonnet JE Blanchard JS Irreversible inhibition of the Mycobacterium tuberculosis beta- lactamase by clavulanate Biochemistry 2007 46 11998 12004 17915954 PMC2593862
- [18]Donald PR Early bactericidal activity of amoxicillin in combination with clavulanic acid in patients with sputum smear-positive pulmonary tuberculosis Scand J Infect Dis 2001 33 466 469 11450868
- [19]Nadler JP Berger J Nord JA Cofsky R Saxena M Amoxicillin-clavulanic acid for treating drug-resistant Mycobacterium tuberculosis Chest 1991 99 1025 1026 1901260
- [20]Ghuysen JM Serine beta-lactamases and penicillin-binding proteins Annu Rev Microbiol 1991 45 37 67 1741619
- [21]Waxman DJ Strominger JL Penicillin-binding proteins and the mechanism of action of beta-lactam antibiotics Annu Rev Biochem 1983 52 825 869 6351730
- [23]Templin MF Ursinus A Holtje JV A defect in cell wall recycling triggers autolysis during the stationary growth phase of Escherichia coli EMBO J 1999 18 4108 4117 10428950 PMC1171488
- [24]Boneca IG A critical role for peptidoglycan N-deacetylation in Listeria evasion from the host innate immune system Proc Natl Acad Sci USA 2007 104 997 1002 17215377 PMC1766339
- [25]Lee MH Pascopella L Jacobs WR Jr Hatfull GF Site-specific integration of mycobacteriophage L5: integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guerin Proc Natl Acad Sci USA 1991 88 3111 3115 1901654 PMC51395
- [26]Amrein KE Purification and characterization of recombinant human p50csk protein- tyrosine kinase from an Escherichia coli expression system overproducing the bacterial chaperones GroES and GroEL Proc Natl Acad Sci USA 1995 92 1048 1052 7862631 PMC42634
- [27]Auger G van Heijenoort J Mengin-Lecreulx D Blanot D A MurG assay which utilises a synthetic analogue of lipid I FEMS Microbiol Lett 2003 219 115 119 12594032
- [28]Arbeloa A Synthesis of mosaic peptidoglycan cross-bridges by hybrid peptidoglycan assembly pathways in gram-positive bacteria J Biol Chem 2004 279 41546 41556 15280360
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- Authors
- Gupta, R., Lavollay, M., Mainardi, J.-L., Arthur, M., Bishai, W. R., & Lamichhane, G.
- Affiliations
- Johns Hopkins University (US)
- Inserm (FR)
- Corresponding author
- Lamichhane, Gyanu
- ORCID
- Venue
- Nature Medicine
- Published
- 2010-03-21
- Volume
- 16
- Issue
- 4
- Pages
- 466-469
- ISSN
- 1078-8956 (ISSN-L)
- 1546-170X
- PMC
- PMC2851841
- OpenAlex
- W2070190311
- Cited by
- 281
- References
- 1
- Citations by year
- 2026: 10 · 2025: 13 · 2024: 14 · 2023: 10 · 2022: 14 · 2021: 24 · 2020: 14 · 2019: 32 · 2018: 24 · 2017: 24 · 2016: 17 · 2015: 18 · 2014: 14 · 2013: 18 · 2012: 16
- FWCI
- 10.99
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Licence
- www.springer.com/tdm (tdm)
- Locations
- Nature Medicine (publishedVersion)
- PubMed (publishedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (n01ai30036-6-0-0)
- National Institute of Allergy and Infectious Diseases (AI 30036, N01 AI030036)
- Topics
- Health Sciences › Medicine › Infectious Diseases › Tuberculosis Research and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Health Sciences › Medicine › Surgery › Infectious Diseases and Tuberculosis
- Keywords
- Mycobacterium tuberculosis, L,D-transpeptidase, peptidoglycan, virulence, amoxicillin resistance, amoxicillin-clavulanic acid, beta-lactam resistance, beta-lactamase inhibitors, chronic tuberculosis, cell wall
- MeSH terms
- Amoxicillin, Animals, Antitubercular Agents, Humans, Mice, Inbred BALB C, Microbial Sensitivity Tests, Models, Biological, Mycobacterium tuberculosis, Penicillin Resistance, Peptidoglycan, Tuberculosis, Pulmonary, Aminoacyltransferases, Mice
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