The DOI matches its Crossref record; 4 of the 4 references it cites were found in a registry or an index.
Biological imaging software tools
Open accessAbstract
Few technologies are more widespread in modern biological laboratories than imaging. Recent advances in optical technologies and instrumentation are providing hitherto unimagined capabilities. Almost all these advances have required the development of software to enable the acquisition, management, analysis and visualization of the imaging data. We review each computational step that biologists encounter when dealing with digital images, the inherent challenges and the overall status of available software for bioimage informatics, focusing on open-source options.
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Citations
Cites
Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890
Self-citationNIH Image to ImageJ: 25 years of image analysis
Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. (2012) · Nature Methods · doi:10.1038/nmeth.2089 · Cited by 64,638
Self-citationPeng, H., Ruan, Z., Long, F., Simpson, J. H., & Myers, E. W. (2010) · Nature Biotechnology · doi:10.1038/nbt.1612 · Cited by 707
Self-citationMultidimensional Drug Profiling By Automated Microscopy
Perlman, Z. E., Slack, M. D., Feng, Y., Mitchison, T. J., Wu, L. F., & Altschuler, S. J. (2004) · Science · doi:10.1126/science.1100709 · Cited by 660
Cited by
The ImageJ ecosystem: An open platform for biomedical image analysis
Schindelin, J., Rueden, C. T., Hiner, M. C., & Eliceiri, K. W. (2015) · Molecular Reproduction and Development · doi:10.1002/mrd.22489 · Cited by 2,636
Self-citationBray, M.-A., Singh, S., Han, H., Davis, C. T., Borgeson, B., Hartland, C., Kost-Alimova, M., Gustafsdottir, S. M., Gibson, C. C., & Carpenter, A. E. (2016) · Nature Protocols · doi:10.1038/nprot.2016.105 · Cited by 1,090
Self-citationData-analysis strategies for image-based cell profiling
Caicedo, J. C., Cooper, S., Heigwer, F., Warchal, S., Qiu, P., Molnar, C., Vasilevich, A. S., Barry, J. D., Bansal, H. S., Kraus, O., et al. (2017) · Nature Methods · doi:10.1038/nmeth.4397 · Cited by 739
Self-citationLee, J. H., Daugharthy, E. R., Scheiman, J., Kalhor, R., Ferrante, T. C., Terry, R., Turczyk, B. M., Yang, J. L., Lee, H. S., Aach, J., et al. (2015) · Nature Protocols · doi:10.1038/nprot.2014.191 · Cited by 529
Microscopy-Based High-Content Screening
Boutros, M., Heigwer, F., & Laufer, C. (2015) · Cell · doi:10.1016/j.cell.2015.11.007 · Cited by 396
Metadata
- Authors
- Eliceiri, K. W., Berthold, M. R., Goldberg, I. G., Ibáñez, L., Manjunath, B. S., Martone, M. E., Murphy, R. F., Peng, H., Plant, A. L., Roysam, B., Stuurman, N., Swedlow, J. R., Tomancak, P., & Carpenter, A. E.
- Venue
- Nature Methods
- Published
- 2012-06-28
- Volume
- 9
- Issue
- 7
- Pages
- 697-710
- ISSN
- 1548-7091 (ISSN-L)
- 1548-7105
- OpenAlex
- W1970480709
- Cited by
- 551
- References
- 4
- FWCI
- 19.26
- Type
- journal article
- Language
- en
- Open access
- green
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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