In situ sequencing for RNA analysis in preserved tissue and cells

Ke, Rongqin, Mignardi, Marco, Pacureanu, Alexandra, Svedlund, Jessica, Botling, Johan, Wählby, Carolina, Nilsson, Mats·2013·Nature Methods
DOI 10.1038/nmeth.2563

Cited by (951)

Items 501–600 of 951

  1. Pathway identification through transcriptome analysis
    Takeshi Terabayashi, Gregory George Germino, Luís F. Menezes · 2020 · Cellular Signalling
  2. Comparative analysis of multiplexed in situ gene expression profiling technologies
    Austin Hartman, Rahul Satija · 2024 · eLife
  3. The burgeoning spatial multi-omics in human gastrointestinal cancers
    Weizheng Liang, Zhenpeng Zhu, Dandan Xu, Peng Wang, Fei Guo, Haoshan Xiao, Chenyang Hou, Jun Wu Xue, Xuejun Zhi, Rensen Ran · 2024 · PeerJ
  4. Opportunities for High-plex Spatial Transcriptomics in Solid Organ Transplantation
    Amy Rachael Cross, Lisa Gartner, Joanna Hester, Fadi Issa · 2023 · Transplantation
  5. Heterogeneity of the tumor immune microenvironment and clinical interventions
    Zheng Jin, Qin Zhou, Jianan Cheng, Qingzhu Jia, Bo Zhu · 2023 · Frontiers of Medicine
  6. A versatile tissue-rolling technique for spatial-omics analyses of the entire murine gastrointestinal tract
    Gustavo Monasterio, Rodrigo A. Morales, David Alejandro Bejarano, Xesús Manoel Abalo, Jennifer Fransson, Ludvig Larsson, Andreas Schlitzer, Joakim Lundeberg, Srustidhar Das, Eduardo J. Villablanca · 2024 · Nature Protocols
  7. scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis
    Yuheng C. Fu, Arpan Das, Dongmei Wang, Rosemary Braun, Rui Yi · 2024 · Genome biology
  8. Squeezable Hydrogel Microparticles for Single Extracellular Vesicle Protein Profiling
    Yoon Ho Roh, Renee‐Tyler T. Morales, Emily Huynh, Uday K. Chintapula, David E. Reynolds, Renis J. Agosto‐Nieves, Daniel Oh, Akari J. Seiner, Jianhua Lim, Christopher B. Rodell et al. · 2024 · Small
  9. Efficient DNA-assisted synthesis of trans-membrane gold nanowires
    Maoxiang Guo, Iván Hernández-Neuta, Narayanan Madaboosi, Mats F. Nilsson, Wouter van der Wijngaart · 2018 · Microsystems & Nanoengineering
  10. Single-cell technologies for profiling T cells to enable monitoring of immunotherapies
    Xingyue An, Navin Varadarajan · 2018 · Current Opinion in Chemical Engineering
  11. Complex Organ Construction from Human Pluripotent Stem Cells for Biological Research and Disease Modeling with New Emerging Techniques
    Ryusaku Matsumoto, Takuya Yamamoto, Yutaka Takahashi · 2021 · International Journal of Molecular Sciences
  12. Conneconomics: The Economics of Dense, Large-Scale, High-Resolution Neural Connectomics
    Adam Henry Marblestone, Evan R. Daugharthy, Reza Kalhor, Ian D. Peikon, Justus M. Kebschull, Seth L. Shipman, Yuriy Mishchenko, Jehyuk Lee, David Dalrymple, Bradley M. Zamft et al. · 2013 · bioRxiv (Cold Spring Harbor Laboratory)
  13. TissUUmaps 3: Improvements in interactive visualization, exploration, and quality assessment of large-scale spatial omics data
    Nicolas Pielawski, Axel Andersson, Christophe Avenel, Andrea Beháňová, Eduard Chelebian, Anna H. Klemm, Fredrik Nysjö, Leslie Solorzano, Carolina Wählby · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  14. Harnessing Single-Cell and Spatial Transcriptomics for Crop Improvement
    Yuzhao Hu, Linkan Dash, Gregory D. May, Nagesh Sardesai, Stéphane Deschamps · 2024 · Plants
  15. Techniques and analytic workflow for spatial transcriptomics and its application to allergy and inflammation
    Haihan Zhang, Matthew T. Patrick, Jingyu Zhao, Xintong Zhai, Jialin Liu, Zheng Li, Yiqian Gu, Joshua D. Welch, Xiang Zhou, Robert L. Modlin et al. · 2025 · Journal of Allergy and Clinical Immunology
  16. Spatiotemporal Dynamics of Central Nervous System Diseases: Advancing Translational Neuropathology via Single‐Cell and Spatial Multiomics
    Mingkai Xia, Quan Liu, Wenli Zhang, Jinwen Ge, Zhigang Mei · 2025 · MedComm
  17. Progress of CRISPR-Cas13 Mediated Live-Cell RNA Imaging and Detection of RNA-Protein Interactions
    Huake Cao, Yuechen Wang, Ning Zhang, Siyuan Xia, Pengfei Tian, Lu Li, Juan Du, Yinan Du · 2022 · Frontiers in Cell and Developmental Biology
  18. Applicability of Spatial Technology in Cancer Research
    Seonghoon Ahn, Hye Seung Lee · 2024 · Cancer Research and Treatment
  19. Trophoblastic signals facilitate endometrial interferon response and lipid metabolism, ensuring normal decidualization
    Ningjie Yang, Yang Sun, Bing Han, Na Deng, Gaizhen Li, Qian Han, Yinan Wang, Han Cai, Fan Liu, Bin Cao et al. · 2024 · Cell Reports
  20. Benchmarking mapping algorithms for cell-type annotating in mouse brain by integrating single-nucleus RNA-seq and Stereo-seq data
    Quyuan Tao, Yiheng Xu, Youzhe He, Ting Luo, Xiao-ming Li, Lei Han · 2024 · Briefings in Bioinformatics
  21. Single-Cell in Situ RNA Analysis With Switchable Fluorescent Oligonucleotides
    Lu Xiao, Jia Guo · 2018 · Frontiers in Cell and Developmental Biology
  22. What Have Advances in Transcriptomic Technologies Taught us About Human White Matter Pathologies?
    Sarah Jäkel, Anna Williams · 2020 · Frontiers in Cellular Neuroscience
  23. Probing steps in DNA transcription using single-molecule methods
    Chun-Ying Lee, Sua Myong · 2021 · Journal of Biological Chemistry
  24. Mechanically Induced Catalytic Amplification Reaction for Readout of Receptor‐Mediated Cellular Forces
    Victor Pui‐Yan Ma, Yang Liu, Kevin M. Yehl, Kornelia D. Galior, Yun Zhang, Khalid S. Salaita · 2016 · Angewandte Chemie
  25. Padlock Probe–Based Targeted In Situ Sequencing: Overview of Methods and Applications
    Anastasia Magoulopoulou, Sergio Marco Salas, Katarína Tiklová, Erik Reinhold Samuelsson, Markus M. Hilscher, Mats Nilsson · 2023 · Annual Review of Genomics and Human Genetics
  26. Unravelling the biological secrets of microchimerism by single-cell analysis
    Anders Ståhlberg, Amin El Heliebi, Peter Sedlmayr, Thomas Kroneis · 2017 · Briefings in Functional Genomics
  27. Subcellular Spatial Transcriptomes: Emerging Frontier for Understanding Gene Regulation
    Furqan M. Fazal, Howard Y. Chang · 2019 · Cold Spring Harbor Symposia on Quantitative Biology
  28. Direct RNA targeted transcriptomic profiling in tissue using Hybridization-based RNA In Situ Sequencing (HybRISS)
    Hower Lee, Sergio Marco Salas, Daniel Gyllborg, Mats F. Nilsson · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  29. Reconstructing the ancestral vertebrate brain using a lamprey neural cell type atlas
    Francesco Lamanna, Francisca Hervas-Sotomayor, A. Phillip Oel, Dávid Jandzík, Daniel Sobrido‐Cameán, Megan L. Martik, Stephen A. Green, Thoomke Brüning, Katharina Mößinger, Julia Schmidt et al. · 2022 · bioRxiv (Cold Spring Harbor Laboratory)
  30. Next generation lineage tracing and its applications to unravel development
    Spencer Short, Rodrigo García-Tejera, Linus J. Schumacher, Daniel L. Coutu · 2025 · npj Systems Biology and Applications
  31. Multiomics for Crop Improvement
    Palak Chaturvedi, Iro Pierides, Shuang Zhang, Jana Schwarzerová, Arindam Ghatak, Wolfram Weckwerth · 2024 · Sustainability Sciences in Asia and Africa
  32. Scoping Review: Methods and Applications of Spatial Transcriptomics in Tumor Research
    Kacper Maciejewski, Patrycja Czerwińska · 2024 · Cancers
  33. Single molecule chromogenic in situ hybridization assay for RNA visualization in fixed cells and tissues
    Meng Jiang, Ling Liu, Chengye Hong, Debo Chen, Xihu Yao, Xiaoyuan Chen, Chen Lin, Rongqin Ke · 2019 · RNA
  34. Potential of Multiscale Astrocyte Imaging for Revealing Mechanisms Underlying Neurodevelopmental Disorders
    Takuma Kumamoto, Tomokazu Tsurugizawa · 2021 · International Journal of Molecular Sciences
  35. Spatiotemporally resolved tools for analyzing gut microbiota
    Xianglin Zhu, Kaixiang Zhang, Xucong Teng, Xuhan Xia, Ruijie Deng, Jinghong Li · 2023 · Chem
  36. Microfluidics-based in situ Padlock/Rolling Circle Amplification System for Counting Single DNA Molecules in a Cell
    Arisa Kuroda, Yuri Ishigaki, Mats F. Nilsson, Kiichi Sato, Kae Sato · 2014 · Analytical Sciences
  37. In situ quantification of individual mRNA transcripts in melanocytes discloses gene regulation of relevance to speciation
    Chi‐Chih Wu, Axel Klaesson, Julia Buskas, Petter Ranefall, Reza Mirzazadeh, Ola Söderberg, Jochen B. W. Wolf · 2019 · Journal of Experimental Biology
  38. Highly Sensitive and Multiplexed In Situ RNA Profiling with Cleavable Fluorescent Tyramide
    Lu Xiao, Joshua LaBaer, Jia Guo · 2021 · Cells
  39. Decoding spatial heterogeneity in plants: Advances and challenges in spatial transcriptomics for stress responses and crop resilience
    Wenwen Shao, Ivana Sitepu, Xing Guo, Bilian Qian, Tong Wei, Sunil Kumar Sahu · 2026 · Plant Stress
  40. Computer-assisted interpretation, in-depth exploration and single cell type annotation of RNA sequence data using k-means clustering algorithm
    Pranshu Saxena, Amit Sinha, Sanjay Kumar Singh · 2024 · Computer Methods in Biomechanics & Biomedical Engineering
  41. Accelerating crop improvement via integration of transcriptome-based network biology and genome editing
    Izreen Izzati Razalli, Muhammad‐Redha Abdullah‐Zawawi, Amin Asyraf Tamizi, Sarahani Harun, Rabiatul‐Adawiah Zainal‐Abidin, Muhammad Irfan Abdul Jalal, Mohammad Asad Ullah, Zamri Zainal · 2025 · Planta
  42. The Secret Life of RNA: Lessons from Emerging Methodologies
    Caroline Médioni, Florence Besse · 2017 · Methods in molecular biology
  43. Classical and emerging techniques to identify and quantify localized RNAs
    J. Matthew Taliaferro · 2019 · Wiley Interdisciplinary Reviews - RNA
  44. The impact of single-cell genomics on the field of mycobacterial infection
    Inês Geraldes, Mónica Fernandes, Alexandra G. Fraga, Nuno Sampaio Osório · 2022 · Frontiers in Microbiology
  45. NIPMAP: niche-phenotype mapping of multiplex histology data by community ecology
    Anissa El Marrahi, Fabio Lipreri, Ziqi Kang, Louise Gsell, Alper Eroğlu, David Alber, Jean Hausser · 2023 · Nature Communications
  46. Spatial technologies to evaluate the HIV-1 reservoir and its microenvironment in the lymph node
    Fatima Zaman, Melissa Laird Smith, Ashwin Balagopal, Christine M. Durand, Andrew D. Redd, Aaron A.R. Tobian · 2024 · mBio
  47. New technologies for DNA analysis – a review of the READNA Project
    Steven McGinn, David L.V. Bauer, Thomas Brefort, Liqin Dong, Afaf Helmy El-Sagheer, Abdou ElSharawy, Geraint W. Evans, Elin Falk-Sörqvist, Michael Förster, Simon Fredriksson et al. · 2015 · New Biotechnology
  48. CD-tagging-MS2: detecting allelic expression of endogenous mRNAs and their protein products in single cells
    Jonathan Sheinberger, Hodaya Hochberg-Laufer, Erez Lavi, Itamar Kanter, Shira Avivi-Mintz, Gita Reinitz, Avital Schwed-Gross, Yuval Aizler, Eli Varon, Noa Kinor et al. · 2017 · Biology Methods and Protocols
  49. Bridging Histology and Bioinformatics—Computational Analysis of Spatially Resolved Transcriptomics
    Marco Mignardi, Omer Ishaq, Xiaoyan Qian, Carolina Wählby · 2016 · Proceedings of the IEEE
  50. ISTDECO: In Situ Transcriptomics Decoding by Deconvolution
    Axel Andersson, Ferran Diego, Fred A. Hamprecht, Carolina Wählby · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  51. High cardiomyocyte diversity in human early prenatal heart development
    Christer Sylvén, Eva Wärdell, Agneta Månsson‐Broberg, Eugenio Cingolani, Konstantinos Ampatzis, Ludvig Larsson, Åsa K. Björklund, Stefania Giacomello · 2022 · iScience
  52. Application and prospects of single-cell and spatial omics technologies in woody plants
    Shaoming Liang, Yiling Li, Yang Chen, Heng Huang, Ran Zhou, Tao Ma · 2023 · Forestry Research
  53. The dawn of spatiotemporal transcriptomics
    Siying Wang, Shichao Lin, Chaoyong James Yang · 2024 · Biomedical Analysis
  54. Spatial Transcriptomics: Biotechnologies, Computational Tools, and Neuroscience Applications
    Qianwen Wang, Hongyuan Zhu, Linhong Deng, Shuangbin Xu, Wenqin Xie, Ming Li, Rui Wang, Liang Tie, Li Zhan, Guangchuang Yu · 2025 · Small Methods
  55. Spatial-Omics Methods and Applications
    Arutha Kulasinghe, Naomi Berrell, Meg L. Donovan, Benedikt S. Nilges · 2025 · Methods in molecular biology
  56. Tissue and cellular spatiotemporal dynamics in colon aging
    Aidan C. Daly, Francesco Cambuli, Tarmo Äijö, Britta Lötstedt, Nemanja Despot Marjanovic, Sara Fernandez, Olena Kuksenko, Matthew Smith-Erb, Daniel Domovic, Nicholas Van Wittenberghe et al. · 2025 · Nature Biotechnology
  57. Spatially organized cellular communities shape functional tissue architecture in the pancreas
    Alejo Torres-Cano, Jean-François Darrigrand, Gabriel Emilio Herrera-Oropeza, Georgina Goss, David Willnow, Anna Salowka, Siwanart Ma, Debashish Chitnis, M. Rouault, Alessandra Vigilante et al. · 2025 · Science Advances
  58. Unravelling Tumour Microenvironment in Melanoma at Single-Cell Level and Challenges to Checkpoint Immunotherapy
    Xinyu Bai, Camelia Y. J. Quek · 2022 · Genes
  59. Achieving single nucleotide sensitivity in direct hybridization genome imaging
    Yanbo Wang, Wayne Taylor Cottle, Haobo Wang, Momčilo M. Gavrilov, Roger S. Zou, Minh‐Tam Pham, Srinivasan Yegnasubramanian, Scott Bailey, Taekjip Ha · 2022 · Nature Communications
  60. Genomic Mysteries of Giant Bacteria: Insights and Implications
    Danny Ionescu, Jean‐Marie Volland, Paul-Emile Contarini, Olivier Gros · 2023 · Genome Biology and Evolution
  61. Highly Multiplexed Single-Cell In Situ RNA and DNA Analysis by Consecutive Hybridization
    Lu Xiao, Renjie Liao, Jia Guo · 2020 · Methods in molecular biology
  62. Beyond quantification: in situ analysis of transcriptome and pre‐ mRNA alternative splicing at the nanoscale
    Yi Cui, Jing Liu, Joseph Irudayaraj · 2016 · Wiley Interdisciplinary Reviews Nanomedicine and Nanobiotechnology
  63. Visualization of individual microRNA molecules in fixed cells and tissues using target-primed padlock probe assay
    Chen Lin, Meng Jiang, Shanshan Duan, Jianlong Qiu, Yujuan Hong, Xin Wang, Xiaoyuan Chen, Rongqin Ke · 2020 · Biochemical and Biophysical Research Communications
  64. Barcoded oligonucleotides ligated on RNA amplified for multiplex and parallel in-situ analyses
    Eswar Prasad R. Iyer, Sukanya Punthambaker, Songlei Liu, Kunal Jindal, Michael Farrell, Jernej Murn, Thomas C. Ferrante, Stewart Rudnicki, Richie E. Kohman, Asmamaw T. Wassie et al. · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  65. Charting Tissue Expression Anatomy by Spatial Transcriptome Decomposition
    Jonas Maaskola, Ludvig Bergenstråhle, Aleksandra Jurek, José Fernández Navarro, Jens Lagergren, Joakim Lundeberg · 2018 · bioRxiv (Cold Spring Harbor Laboratory)
  66. Open-source, high-throughput targeted in-situ transcriptomics for developmental biologists
    Hower Lee, Christoffer Mattsson Langseth, Sergio Marco Salas, Andreas Metousis, Eneritz Rueda-Alaña, Fernando García‐Moreno, Marco Grillo, Mats F. Nilsson · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  67. Generation of Mammalian Astrocyte Functional Heterogeneity
    Theresa Bartels, David H. Rowitch, Omer Ali Bayraktar · 2024 · Cold Spring Harbor Perspectives in Biology
  68. Systematic Benchmarking of High-Throughput Subcellular Spatial Transcriptomics Platforms
    Pengfei Ren, Rui Zhang, Yunfeng Wang, Peng Zhang, Ce Luo, Suyan Wang, Xiaohong Li, Zongxu Zhang, Yanping Zhao, Yufeng He et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  69. Multiplexed spatial transcriptomics methods and the application of expansion microscopy
    Fortner, Andra, Bucur, Octavian · 2024 · Frontiers in Cell and Developmental Biology
  70. Spatial RNA sequencing methods show high resolution of single cell in cancer metastasis and the formation of tumor microenvironment
    Yue Zheng, Xiaofeng Yang · 2022 · Bioscience Reports
  71. Spatial Omics Sequencing Based on Microfluidic Array Chips
    Jian‐Yu Shi, Yating Pan, Xudong Liu, Wenjian Cao, Ying Mu, Qiangyuan Zhu · 2023 · Biosensors
  72. Spatial analysis toolkits for RNA in situ sequencing
    Jiayu Chen, Rongqin Ke · 2024 · Wiley Interdisciplinary Reviews - RNA
  73. Next‐generation spatial transcriptomics: unleashing the power to gear up translational oncology
    Nan Wang, Weifeng Hong, Yixing Wu, Zhe‐Sheng Chen, Minghua Bai, Weixin Wang, Ji Ye Zhu · 2024 · MedComm
  74. Unveiling the development of cotton somatic embryos: Integrating spatial transcriptomics and metabolomics
    Aizhi Qin, Yaping Zhou, Xiaole Yu, Xiaoyang Ge, Zhixin Liu, Hao Liu, Lam‐Son Phan Tran, Xuwu Sun · 2025 · Industrial Crops and Products
  75. Pooled optical screening in bacteria using chromosomally expressed barcodes
    Ruben R. G. Soares, Daniela A. García‐Soriano, Jimmy Larsson, David Fange, Dvir Schirman, Marco Grillo, Anna Knöppel, Beer Chakra Sen, Fabian Svahn, Spartak Zikrin et al. · 2025 · Communications Biology
  76. Spatially Resolved Transcriptomics: Revealing Tumor Microenvironment Heterogeneity to Advance Cancer Immunotherapy
    Dan Liu, Lu Xin Xiao, Yaojiong Wu, Chensirong Yue, Mengmeng Li, Yu Sun, Chaoyong James Yang · 2025 · Small Methods
  77. Image recovery from unknown network mechanisms for DNA sequencing-based microscopy
    David Fernández Bonet, Ian T. Hoffecker · 2023 · Nanoscale
  78. Deconvolution of spatial sequencing provides accurate characterization of hESC-derived DA transplants in vivo
    Jana Rájová, Marcus Davidsson, Martino Avallone, Morgan Hartnor, Patrick Aldrin-Kirk, Tiago Cardoso, Sara Nolbrant, Annelie Mollbrink, Petter Storm, Andreas Heuer et al. · 2023 · Molecular Therapy — Methods & Clinical Development
  79. In situ characterization of the tumor microenvironment
    Habib Sadeghirad, Vahid Yaghoubi Naei, Kenneth John O'Byrne, Majid Ebrahimi Warkiani, Arutha Kulasinghe · 2024 · Current Opinion in Biotechnology
  80. Emerging Roles of Spatial Transcriptomics in Liver Research
    Naoto Fujiwara, Genki Kimura, Hayato Nakagawa · 2024 · Seminars in Liver Disease
  81. Genome analysis through image processing with deep learning models
    Yaozhong Zhang, Seiya Imoto · 2024 · Journal of Human Genetics
  82. Pooled image-base screening of mitochondria with microraft isolation distinguishes pathogenic mitofusin 2 mutations
    Alex L. Yenkin, John C. Bramley, Colin L. Kremitzki, Jason E. Waligorski, Mariel J. Liebeskind, Xinyuan E. Xu, Vinay D. Chandrasekaran, Maria A. Vakaki, Graham W. Bachman, Robi David Mitra et al. · 2022 · Communications Biology
  83. Cross-Platform Comparison of Computer-assisted Image Analysis Quantification of In Situ mRNA Hybridization in Investigative Pathology
    Timothy R. Holzer, Jeffrey C. Hanson, Erin M. Wray, Jason A. Bailey, Kim Robyn Kennedy, Patrick R. Finnegan, Aejaz Nasir, Kelly M. Credille · 2017 · Applied immunohistochemistry & molecular morphology
  84. A short feature vector for image matching: The Log-Polar Magnitude feature descriptor
    Damian J. Matuszewski, Anders Hast, Carolina Wählby, Ida‐Maria Sintorn · 2017 · PLoS ONE
  85. SMaSH: A scalable, general marker gene identification framework for single-cell RNA sequencing and Spatial Transcriptomics
    M. E. Nelson, Simone G. Riva, Ana Cvejic · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
  86. Thermodynamics and Kinetics‐Directed Regulation of Nucleic Acid‐Based Molecular Recognition
    Yihao Liu, Zihan Zhao, Yuqi Zeng, Minze He, Yifan Lyu, Quan Yuan · 2024 · Small Methods
  87. Novel Molecular Methods in Soft Tissue Sarcomas: From Diagnostics to Theragnostics
    Nicholas Frazzette, George Jour · 2025 · Cancers
  88. The application and prospects of spatial omics technologies in clinical medical research and molecular diagnostics
    Xiaofeng Wu, Weize Xu, Da Lin, Leqiang Sun, Lit‐Hsin Loo, Jinxia Dai, Gang Cao · 2025 · Journal of genetics and genomics/Journal of Genetics and Genomics
  89. ELLA: modeling subcellular spatial variation of gene expression within cells in high-resolution spatial transcriptomics
    Jade Xiaoqing Wang, Xiang Zhou · 2025 · Nature Communications
  90. Spatial transcriptomics: integrating platforms and computational approaches for clinical insights
    Wei Song, Duo Wang, Jinming Li, Rui Zhang · 2025 · Biotechnology Advances
  91. Mapping biology in space: from spatial transcriptomics platforms to analytical tools and databases
    Zizhen Guo, Renyan Wu, Weixiang Li, Keyu Yang, Xuexiang Ying, Hamid Alinejad-Rokny, Youqiong Ye · 2026 · 中国科学通报：英文版
  92. The industrial genomic revolution: A new era in neuroimmunology
    Rotem Shalita, Ido Amit · 2022 · Neuron
  93. Research progress of single-cell sequencing in tuberculosis
    Jiahui Pan, Zecheng Chang, Xinyue Zhang, Qinzhou Dong, He Zhao, Jingwei Shi, Guoqing Wang · 2023 · Frontiers in Immunology
  94. MarkerMap: nonlinear marker selection for single-cell studies
    Wilson G. Gregory, Nabeel Sarwar, George A. Kevrekidis, Soledad Villar, Bianca Dumitrascu · 2024 · npj Systems Biology and Applications
  95. MERFISHing for spatial context
    Alex K. Shalek, Rahul Satija · 2015 · Trends in Immunology
  96. Modeling Spatial Correlation of Transcripts with Application to Developing Pancreas
    Ruishan Liu, Marco Mignardi, Robert C. Jones, M. Enge, Seung K. Kim, S. Quake, James Zou · 2018 · Scientific Reports
  97. Skin‐ny deeping: Uncovering immune cell behavior and function through imaging techniques*
    Yingrou Tan, Hong Liang Tey, Shu Zhen Chong, Lai Guan Ng · 2021 · Immunological Reviews
  98. Enabling automated and reproducible spatially resolved transcriptomics at scale
    Linnea Stenbeck, Fanny Taborsak-Lines, Stefania Giacomello · 2022 · Heliyon
  99. Activatable Fluorescence-Encoded Nanoprobes Enable Simple Multiplexed RNA Imaging in Live Cells
    Ya Wang, Yamin Xiong, Yanjuan Duan, Kangqi Shi, Chaojie Su, Lihua Ding, Jia Wang, Leiliang He · 2023 · ACS Sensors
  100. Structured Illumination Microscopy Improves Spot Detection Performance in Spatial Transcriptomics
    Alejandro Linares, Carlo Brighi, Sergio Espínola, Francesco Bacchi, Álvaro H. Crevenna · 2023 · Cells