In situ sequencing for RNA analysis in preserved tissue and cells

Ke, Rongqin, Mignardi, Marco, Pacureanu, Alexandra, Svedlund, Jessica, Botling, Johan, Wählby, Carolina, Nilsson, Mats·2013·Nature Methods
DOI 10.1038/nmeth.2563

Cited by (951)

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  72. Additional file 2 of SRTsim: spatial pattern preserving simulations for spatially resolved transcriptomics
    Zhu, Jiaqiang, Lulu Shang, Zhou, Xiang · 2024 · Figshare
  73. Additional file 3 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  74. Additional file 4 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  75. Additional file 11 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  76. Additional file 1 of Automated identification of the mouse brain’s spatial compartments from in situ sequencing data
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  77. Additional file 1 of SRTsim: spatial pattern preserving simulations for spatially resolved transcriptomics
    Zhu, Jiaqiang, Lulu Shang, Zhou, Xiang · 2024 · Figshare
  78. Additional file 1 of scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis
    Yuheng C. Fu, Arpan Das, Wang, Dongmei, Braun, Rosemary, Rui Yi · 2024 · Figshare
  79. Additional file 2 of Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps
    Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Nilsson, Mats · 2021 · Figshare
  80. Additional file 13 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, Kiss, András, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  81. Additional file 2 of scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis
    Yuheng C. Fu, Das, Arpan, Wang, Dongmei, Braun, Rosemary, Rui Yi · 2024 · Figshare
  82. Additional file 3 of STmut: a framework for visualizing somatic alterations in spatial transcriptomics data of cancer
    Limin Chen, Darwin Chang, Bishal Tandukar, Delahny Deivendran, Joanna Poźniak, Noel Cruz‐Pacheco, Raymond Jaihyun Cho, Cheng, Jeffrey, Iwei Yeh, Jean‐Christophe Marine et al. · 2024 · Figshare
  83. Additional file 1 of Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps
    Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Nilsson, Mats · 2021 · Figshare
  84. Additional file 7 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  85. Additional file 1 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  86. Additional file 10 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  87. Additional file 12 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, Kiss, András, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  88. Additional file 6 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, Kiss, András, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  89. Additional file 4 of SRTsim: spatial pattern preserving simulations for spatially resolved transcriptomics
    Zhu, Jiaqiang, Lulu Shang, Zhou, Xiang · 2024 · Figshare
  90. Additional file 2 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, Kiss, András, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  91. Additional file 3 of scHolography: a computational method for single-cell spatial neighborhood reconstruction and analysis
    Yuheng C. Fu, Das, Arpan, Wang, Dongmei, Braun, Rosemary, Rui Yi · 2024 · Figshare
  92. Additional file 3 of Matisse: a MATLAB-based analysis toolbox for in situ sequencing expression maps
    Sergio Marco Salas, Daniel Gyllborg, Christoffer Mattsson Langseth, Nilsson, Mats · 2021 · Figshare
  93. Additional file 8 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  94. Additional file 9 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, Kiss, András, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  95. Additional file 14 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  96. Additional file 5 of Dual spatially resolved transcriptomics for human host–pathogen colocalization studies in FFPE tissue sections
    Hailey Sounart, Enikő Lázár, Yuvarani Masarapu, Jian Wu, Tibor Várkonyi, Tibor Glasz, András Kiss, Erik Borgström, Hill, Andrew, Sefanit Rezene et al. · 2024 · Figshare
  97. Additional file 2 of STmut: a framework for visualizing somatic alterations in spatial transcriptomics data of cancer
    Limin Chen, Darwin Chang, Bishal Tandukar, Delahny Deivendran, Joanna Poźniak, Noel Cruz‐Pacheco, Raymond Jaihyun Cho, Jeffrey B. Cheng, Iwei Yeh, Jean‐Christophe Marine et al. · 2024 · Figshare
  98. Additional file 3 of SRTsim: spatial pattern preserving simulations for spatially resolved transcriptomics
    Zhu, Jiaqiang, Lulu Shang, Zhou, Xiang · 2024 · Figshare
  99. Additional file 5 of SRTsim: spatial pattern preserving simulations for spatially resolved transcriptomics
    Zhu, Jiaqiang, Lulu Shang, Zhou, Xiang · 2024 · Figshare
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